Wall clock time and date at job start Tue Mar 31 2020 03:17:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21290 * 119.99412 * 2 1 4 4 N 1.34769 * 120.00689 * 180.02562 * 2 1 3 5 5 C 1.46972 * 120.58967 * 359.71344 * 4 2 1 6 6 C 1.53811 * 108.39489 * 124.76152 * 5 4 2 7 7 N 1.46975 * 108.57837 * 49.64006 * 6 5 4 8 8 C 1.34773 * 120.59438 * 124.66666 * 7 6 5 9 9 O 1.21285 * 120.00233 * 175.33308 * 8 7 6 10 10 C 1.50705 * 120.00016 * 355.33701 * 8 7 6 11 11 H 1.08997 * 109.47181 * 34.96077 * 10 8 7 12 12 C 1.52998 * 109.47134 * 274.95945 * 10 8 7 13 13 N 1.46904 * 109.47268 * 154.96093 * 10 8 7 14 14 C 1.46902 * 110.99943 * 298.92187 * 13 10 8 15 15 C 1.46898 * 111.00057 * 174.96402 * 13 10 8 16 16 C 1.50701 * 109.46892 * 189.99821 * 15 13 10 17 17 H 1.08001 * 120.00028 * 0.02562 * 16 15 13 18 18 C 1.37881 * 119.99577 * 179.97438 * 16 15 13 19 19 N 1.31513 * 120.00115 * 0.02562 * 18 16 15 20 20 Si 1.86806 * 119.99619 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.46805 * 90.00332 * 20 18 16 22 22 H 1.48499 * 109.46864 * 210.00192 * 20 18 16 23 23 H 1.48496 * 109.47301 * 330.00260 * 20 18 16 24 24 C 1.46965 * 118.81037 * 304.64348 * 7 6 5 25 25 C 1.46966 * 120.59924 * 180.02562 * 4 2 1 26 26 H 1.09000 * 109.46658 * 239.99311 * 1 2 3 27 27 H 1.08993 * 109.47406 * 359.97438 * 1 2 3 28 28 H 1.09003 * 109.46721 * 120.00308 * 1 2 3 29 29 H 1.09004 * 109.61047 * 244.54270 * 5 4 2 30 30 H 1.08997 * 109.60820 * 5.05994 * 5 4 2 31 31 H 1.08994 * 109.74709 * 289.84828 * 6 5 4 32 32 H 1.09003 * 109.53495 * 169.29967 * 6 5 4 33 33 H 1.09004 * 109.46970 * 52.80992 * 12 10 8 34 34 H 1.08994 * 109.47269 * 172.80744 * 12 10 8 35 35 H 1.09000 * 109.46959 * 292.81316 * 12 10 8 36 36 H 1.09001 * 109.47324 * 65.52280 * 14 13 10 37 37 H 1.08992 * 109.47349 * 185.53049 * 14 13 10 38 38 H 1.09000 * 109.46982 * 305.53081 * 14 13 10 39 39 H 1.09001 * 109.47206 * 310.00256 * 15 13 10 40 40 H 1.09004 * 109.46929 * 70.00150 * 15 13 10 41 41 H 0.97004 * 119.99792 * 179.97438 * 19 18 16 42 42 H 1.09006 * 109.61129 * 295.48424 * 24 7 6 43 43 H 1.08995 * 109.60419 * 174.97249 * 24 7 6 44 44 H 1.08997 * 109.60533 * 354.94002 * 25 4 2 45 45 H 1.08993 * 109.61285 * 115.45518 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0505 0.0000 4 7 2.1810 -1.1671 -0.0005 5 6 1.4594 -2.4474 0.0052 6 6 1.9409 -3.2813 -1.1942 7 7 3.4106 -3.2965 -1.1942 8 6 4.0845 -4.4636 -1.1946 9 8 5.2943 -4.4653 -1.2800 10 6 3.3348 -5.7667 -1.0890 11 1 2.3844 -5.6828 -1.6160 12 6 3.0744 -6.0873 0.3842 13 7 4.1349 -6.8421 -1.6901 14 6 4.3835 -6.5803 -3.1141 15 6 3.4894 -8.1479 -1.4997 16 6 4.4423 -9.2430 -1.9046 17 1 5.4288 -8.9938 -2.2668 18 6 4.0549 -10.5630 -1.8118 19 7 2.8538 -10.8663 -1.3703 20 14 5.2362 -11.9205 -2.3130 21 1 6.0436 -12.3332 -1.1370 22 1 4.4660 -13.0853 -2.8182 23 1 6.1380 -11.4220 -3.3823 24 6 4.1320 -2.0161 -1.1942 25 6 3.6505 -1.1822 0.0000 26 1 -0.3633 -0.5140 0.8899 27 1 -0.3634 1.0276 0.0005 28 1 -0.3633 -0.5139 -0.8900 29 1 1.6683 -2.9810 0.9326 30 1 0.3884 -2.2642 -0.0811 31 1 1.5797 -2.8359 -2.1211 32 1 1.5646 -4.3004 -1.1042 33 1 2.5928 -5.2341 0.8621 34 1 2.4244 -6.9591 0.4569 35 1 4.0206 -6.2968 0.8831 36 1 5.0082 -5.6930 -3.2168 37 1 4.8922 -7.4362 -3.5575 38 1 3.4343 -6.4173 -3.6246 39 1 3.2197 -8.2703 -0.4507 40 1 2.5910 -8.2022 -2.1146 41 1 2.5812 -11.7950 -1.3053 42 1 3.9268 -1.4805 -2.1212 43 1 5.2027 -2.1996 -1.1042 44 1 4.0269 -0.1632 -0.0897 45 1 4.0115 -1.6279 0.9269 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177188787.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:05 Heat of formation + Delta-G solvation = -70.451131 kcal Electronic energy + Delta-G solvation = -25194.629246 eV Core-core repulsion = 21632.943516 eV Total energy + Delta-G solvation = -3561.685730 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.72231 -40.62713 -38.46239 -37.67591 -35.18845 -34.73383 -33.20614 -31.86647 -30.60853 -29.45378 -28.47343 -26.28951 -25.61616 -24.73215 -23.69938 -22.17804 -20.75879 -19.36672 -18.77871 -18.34371 -17.53841 -17.27023 -16.86742 -16.73924 -16.54982 -16.45055 -15.94233 -15.41407 -15.25996 -14.88490 -14.67483 -14.46248 -14.23203 -13.88480 -13.73706 -13.43859 -13.24702 -13.18744 -12.97754 -12.87650 -12.81056 -12.65226 -12.58061 -12.45401 -12.37285 -12.32289 -12.26027 -11.86223 -11.30851 -10.92288 -10.69279 -10.52341 -10.33461 -9.41333 -8.97561 -8.18973 -6.26405 1.41793 1.42837 1.51267 1.53708 1.64339 1.66761 2.11765 2.42315 3.13625 3.25041 3.44214 3.59000 3.75272 3.97046 4.01643 4.10327 4.13631 4.23331 4.29908 4.41054 4.42277 4.53688 4.58905 4.63832 4.64376 4.68348 4.70879 4.78459 4.86977 4.96265 5.06288 5.12670 5.20570 5.26087 5.32028 5.37212 5.43505 5.66516 6.04802 6.22017 6.29570 6.38397 6.62512 6.87385 7.11054 7.18221 7.42032 8.91441 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.035902 B = 0.003130 C = 0.002988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 779.703310 B = 8942.568694 C = 9367.010862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.506 3.494 3 O -0.600 6.600 4 N -0.613 5.613 5 C 0.093 3.907 6 C 0.081 3.919 7 N -0.613 5.613 8 C 0.527 3.473 9 O -0.561 6.561 10 C 0.064 3.936 11 H 0.073 0.927 12 C -0.131 4.131 13 N -0.540 5.540 14 C 0.043 3.957 15 C 0.208 3.792 16 C -0.527 4.527 17 H 0.052 0.948 18 C 0.009 3.991 19 N -0.927 5.927 20 Si 0.961 3.039 21 H -0.275 1.275 22 H -0.279 1.279 23 H -0.271 1.271 24 C 0.105 3.895 25 C 0.104 3.896 26 H 0.114 0.886 27 H 0.088 0.912 28 H 0.115 0.885 29 H 0.086 0.914 30 H 0.140 0.860 31 H 0.090 0.910 32 H 0.111 0.889 33 H 0.094 0.906 34 H 0.067 0.933 35 H 0.046 0.954 36 H 0.056 0.944 37 H 0.058 0.942 38 H 0.021 0.979 39 H 0.029 0.971 40 H -0.029 1.029 41 H 0.265 0.735 42 H 0.075 0.925 43 H 0.086 0.914 44 H 0.094 0.906 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.079 19.016 2.973 21.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.298 3.702 3 O -0.482 6.482 4 N -0.346 5.346 5 C -0.030 4.030 6 C -0.042 4.042 7 N -0.348 5.348 8 C 0.315 3.685 9 O -0.438 6.438 10 C -0.047 4.047 11 H 0.090 0.910 12 C -0.188 4.188 13 N -0.265 5.265 14 C -0.105 4.105 15 C 0.082 3.918 16 C -0.565 4.565 17 H 0.071 0.929 18 C -0.189 4.189 19 N -0.568 5.568 20 Si 0.786 3.214 21 H -0.201 1.201 22 H -0.204 1.204 23 H -0.196 1.196 24 C -0.019 4.019 25 C -0.020 4.020 26 H 0.133 0.867 27 H 0.107 0.893 28 H 0.133 0.867 29 H 0.104 0.896 30 H 0.158 0.842 31 H 0.108 0.892 32 H 0.129 0.871 33 H 0.112 0.888 34 H 0.086 0.914 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.039 0.961 39 H 0.047 0.953 40 H -0.011 1.011 41 H 0.074 0.926 42 H 0.093 0.907 43 H 0.105 0.895 44 H 0.112 0.888 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.788 19.399 3.201 21.536 hybrid contribution 0.154 -0.957 -0.742 1.221 sum -8.634 18.442 2.459 20.511 Atomic orbital electron populations 1.21995 0.87856 1.06222 1.06605 1.21711 0.92470 0.82106 0.73910 1.90700 1.72146 1.32834 1.52490 1.48240 1.06479 1.06979 1.72927 1.22541 0.99185 0.82584 0.98649 1.22621 0.78062 1.03345 1.00181 1.48134 1.08023 1.04823 1.73777 1.20769 0.87524 0.85486 0.74707 1.90656 1.16008 1.87313 1.49786 1.21718 0.94766 0.89295 0.98970 0.90994 1.21747 1.02155 1.02914 0.91995 1.61811 1.47631 1.02133 1.14929 1.22155 0.99067 1.01034 0.88250 1.19504 0.91846 0.84419 0.95982 1.21449 1.00489 0.91460 1.43098 0.92944 1.25733 0.96922 1.00906 0.95349 1.70032 1.19832 1.19202 1.47698 0.85508 0.78800 0.78434 0.78623 1.20084 1.20398 1.19557 1.21889 0.98044 0.83230 0.98707 1.21845 0.80788 1.01297 0.98074 0.86725 0.89347 0.86671 0.89587 0.84244 0.89186 0.87082 0.88763 0.91446 0.93456 0.92529 0.92360 0.96098 0.95316 1.01117 0.92605 0.90659 0.89542 0.88817 0.90895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.13 8.66 71.24 0.62 -0.51 16 2 C 0.51 8.60 7.81 87.66 0.68 9.28 16 3 O -0.60 -16.32 16.49 -3.06 -0.05 -16.37 16 4 N -0.61 -9.16 2.94 -817.07 -2.40 -11.56 16 5 C 0.09 0.82 6.54 86.56 0.57 1.38 16 6 C 0.08 1.07 6.46 86.56 0.56 1.63 16 7 N -0.61 -13.67 2.95 -817.05 -2.41 -16.07 16 8 C 0.53 16.74 6.03 87.66 0.53 17.27 16 9 O -0.56 -22.94 14.83 -3.05 -0.05 -22.99 16 10 C 0.06 2.13 1.64 44.17 0.07 2.20 16 11 H 0.07 2.06 6.23 -2.39 -0.01 2.04 16 12 C -0.13 -3.88 8.44 71.98 0.61 -3.27 16 13 N -0.54 -23.82 4.32 -906.03 -3.92 -27.74 16 14 C 0.04 1.80 9.03 127.69 1.15 2.96 16 15 C 0.21 10.63 4.45 85.56 0.38 11.01 16 16 C -0.53 -29.87 8.38 25.60 0.21 -29.66 16 17 H 0.05 3.04 7.17 -2.91 -0.02 3.01 16 18 C 0.01 0.53 5.46 84.66 0.46 0.99 16 19 N -0.93 -53.77 13.29 21.45 0.28 -53.48 16 20 Si 0.96 44.32 29.54 68.60 2.03 46.34 16 21 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 22 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 23 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 24 C 0.10 2.21 6.58 86.43 0.57 2.78 16 25 C 0.10 1.94 6.59 86.43 0.57 2.51 16 26 H 0.11 0.24 7.90 -2.39 -0.02 0.22 16 27 H 0.09 0.72 8.12 -2.39 -0.02 0.70 16 28 H 0.11 0.23 7.73 -2.39 -0.02 0.21 16 29 H 0.09 0.73 8.14 -2.38 -0.02 0.72 16 30 H 0.14 0.17 5.91 -2.39 -0.01 0.16 16 31 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.11 1.39 5.36 -2.39 -0.01 1.38 16 33 H 0.09 1.91 8.13 -2.38 -0.02 1.89 16 34 H 0.07 2.15 6.55 -2.39 -0.02 2.13 16 35 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.06 2.29 6.53 -2.39 -0.02 2.28 16 37 H 0.06 2.64 6.65 -2.39 -0.02 2.62 16 38 H 0.02 0.78 8.12 -2.39 -0.02 0.76 16 39 H 0.03 1.52 5.84 -2.39 -0.01 1.51 16 40 H -0.03 -1.55 8.12 -2.38 -0.02 -1.57 16 41 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 42 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 43 H 0.09 2.18 7.02 -2.39 -0.02 2.16 16 44 H 0.09 1.95 6.99 -2.39 -0.02 1.94 16 45 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -78.43 353.16 1.45 -76.98 By element: Atomic # 1 Polarization: 5.34 SS G_CDS: 0.98 Total: 6.32 kcal Atomic # 6 Polarization: 11.58 SS G_CDS: 6.98 Total: 18.56 kcal Atomic # 7 Polarization: -100.41 SS G_CDS: -8.44 Total: -108.85 kcal Atomic # 8 Polarization: -39.26 SS G_CDS: -0.10 Total: -39.36 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.34 kcal Total: -78.43 1.45 -76.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177188787.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.527 kcal (2) G-P(sol) polarization free energy of solvation -78.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds