Wall clock time and date at job start Tue Mar 31 2020 03:17:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21279 * 119.99998 * 2 1 4 4 N 1.34777 * 120.00088 * 179.97438 * 2 1 3 5 5 C 1.46961 * 120.59416 * 4.72372 * 4 2 1 6 6 C 1.53374 * 108.63256 * 235.20075 * 5 4 2 7 7 N 1.46966 * 108.63708 * 310.57539 * 6 5 4 8 8 C 1.34772 * 120.59416 * 235.20722 * 7 6 5 9 9 O 1.21277 * 120.00155 * 354.73504 * 8 7 6 10 10 C 1.50706 * 119.99776 * 174.46811 * 8 7 6 11 11 H 1.08995 * 109.46850 * 325.39307 * 10 8 7 12 12 C 1.52995 * 109.47458 * 85.39589 * 10 8 7 13 13 N 1.46904 * 109.46952 * 205.39586 * 10 8 7 14 14 C 1.46900 * 111.00067 * 61.09896 * 13 10 8 15 15 C 1.46901 * 111.00088 * 185.05232 * 13 10 8 16 16 C 1.50698 * 109.47036 * 169.99888 * 15 13 10 17 17 H 1.08000 * 119.99952 * 0.02562 * 16 15 13 18 18 C 1.37878 * 119.99651 * 179.97438 * 16 15 13 19 19 N 1.31507 * 120.00311 * 0.02562 * 18 16 15 20 20 Si 1.86801 * 119.99728 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46752 * 90.00554 * 20 18 16 22 22 H 1.48492 * 109.47164 * 210.00087 * 20 18 16 23 23 H 1.48495 * 109.47494 * 330.00759 * 20 18 16 24 24 C 1.46973 * 118.80843 * 55.47730 * 7 6 5 25 25 C 1.46964 * 120.59244 * 184.69447 * 4 2 1 26 26 H 1.09002 * 109.47336 * 264.54356 * 1 2 3 27 27 H 1.08998 * 109.47244 * 24.54955 * 1 2 3 28 28 H 1.09000 * 109.46825 * 144.55203 * 1 2 3 29 29 H 1.08997 * 109.60786 * 115.46134 * 5 4 2 30 30 H 1.08994 * 109.61064 * 354.94462 * 5 4 2 31 31 H 1.09002 * 109.61048 * 190.83231 * 6 5 4 32 32 H 1.09003 * 109.60854 * 70.31995 * 6 5 4 33 33 H 1.09002 * 109.47305 * 65.29832 * 12 10 8 34 34 H 1.09000 * 109.47652 * 185.30251 * 12 10 8 35 35 H 1.08998 * 109.46837 * 305.30441 * 12 10 8 36 36 H 1.08997 * 109.47289 * 64.97658 * 14 13 10 37 37 H 1.08993 * 109.47239 * 184.98083 * 14 13 10 38 38 H 1.09007 * 109.47207 * 304.97884 * 14 13 10 39 39 H 1.08996 * 109.46867 * 289.99915 * 15 13 10 40 40 H 1.08994 * 109.46794 * 50.00051 * 15 13 10 41 41 H 0.97004 * 120.00432 * 179.97438 * 19 18 16 42 42 H 1.08995 * 109.60826 * 64.26803 * 24 7 6 43 43 H 1.09001 * 109.60355 * 184.77795 * 24 7 6 44 44 H 1.08995 * 109.61603 * 244.54702 * 25 4 2 45 45 H 1.09006 * 109.61420 * 5.05995 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.4630 -2.4454 -0.1031 6 6 1.8599 -3.3281 1.0867 7 7 3.3258 -3.3454 1.1903 8 6 3.9997 -4.5126 1.1908 9 8 3.3934 -5.5628 1.2016 10 6 5.5066 -4.5125 1.1718 11 1 5.8624 -3.6712 0.5772 12 6 6.0348 -4.3858 2.6021 13 7 5.9889 -5.7682 0.5813 14 6 5.5220 -5.9119 -0.8041 15 6 7.4534 -5.8564 0.6550 16 6 7.8930 -7.2457 0.2708 17 1 7.1580 -7.9887 -0.0014 18 6 9.2336 -7.5678 0.2657 19 7 10.1286 -6.6629 0.5967 20 14 9.7784 -9.2902 -0.2098 21 1 10.0136 -9.3480 -1.6750 22 1 11.0345 -9.6275 0.5067 23 1 8.7204 -10.2641 0.1604 24 6 4.0432 -2.0673 1.2995 25 6 3.6468 -1.1844 0.1041 26 1 -0.3634 -0.0977 1.0230 27 1 -0.3633 0.9347 -0.4270 28 1 -0.3633 -0.8372 -0.5960 29 1 1.7344 -2.9428 -1.0342 30 1 0.3885 -2.2642 -0.0818 31 1 1.4924 -4.3421 0.9286 32 1 1.4332 -2.9204 2.0031 33 1 5.7582 -5.2731 3.1716 34 1 7.1204 -4.2910 2.5816 35 1 5.6018 -3.5028 3.0723 36 1 5.9654 -5.1296 -1.4200 37 1 5.8181 -6.8881 -1.1879 38 1 4.4358 -5.8247 -0.8324 39 1 7.8958 -5.1329 -0.0297 40 1 7.7795 -5.6404 1.6723 41 1 11.0718 -6.8897 0.5935 42 1 3.7684 -1.5720 2.2307 43 1 5.1179 -2.2485 1.2820 44 1 4.0735 -1.5921 -0.8123 45 1 4.0144 -0.1705 0.2623 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177188802.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:17:07 Heat of formation + Delta-G solvation = -68.150544 kcal Electronic energy + Delta-G solvation = -25225.792771 eV Core-core repulsion = 21664.206802 eV Total energy + Delta-G solvation = -3561.585969 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.73996 -40.65085 -38.48557 -37.66230 -35.31821 -34.72263 -32.92963 -32.19083 -30.58885 -29.46249 -28.43854 -26.31545 -25.71386 -24.72531 -23.68101 -22.19642 -20.69941 -19.54217 -18.74492 -18.36327 -17.59447 -17.31212 -16.82641 -16.70829 -16.61376 -16.33679 -16.02374 -15.46814 -15.29053 -14.84062 -14.75692 -14.50289 -14.26252 -13.91192 -13.79619 -13.43147 -13.33469 -13.10547 -13.01802 -12.88826 -12.78994 -12.68290 -12.52251 -12.48259 -12.38052 -12.33653 -12.28691 -11.87440 -11.30718 -10.94150 -10.69658 -10.52984 -10.34547 -9.42247 -9.01505 -8.20071 -6.28316 1.40900 1.42083 1.49108 1.54013 1.61890 1.66828 2.11017 2.41456 3.12456 3.21883 3.41081 3.61975 3.77300 3.81448 4.02323 4.08733 4.10424 4.22013 4.29233 4.36457 4.39689 4.49049 4.58381 4.61117 4.65120 4.70882 4.71552 4.75347 4.84656 4.93511 5.03054 5.11398 5.17179 5.20313 5.30127 5.33195 5.46232 5.64967 6.02385 6.18875 6.27225 6.35405 6.58737 6.85726 7.09234 7.16490 7.40432 8.90642 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.032045 B = 0.003185 C = 0.003102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.548378 B = 8790.044286 C = 9023.723930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.507 3.493 3 O -0.597 6.597 4 N -0.613 5.613 5 C 0.096 3.904 6 C 0.094 3.906 7 N -0.614 5.614 8 C 0.531 3.469 9 O -0.554 6.554 10 C 0.061 3.939 11 H 0.064 0.936 12 C -0.134 4.134 13 N -0.536 5.536 14 C 0.047 3.953 15 C 0.207 3.793 16 C -0.526 4.526 17 H 0.055 0.945 18 C 0.007 3.993 19 N -0.930 5.930 20 Si 0.964 3.036 21 H -0.273 1.273 22 H -0.280 1.280 23 H -0.270 1.270 24 C 0.094 3.906 25 C 0.096 3.904 26 H 0.115 0.885 27 H 0.092 0.908 28 H 0.110 0.890 29 H 0.072 0.928 30 H 0.139 0.861 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.051 0.949 34 H 0.063 0.937 35 H 0.090 0.910 36 H 0.014 0.986 37 H 0.057 0.943 38 H 0.062 0.938 39 H -0.033 1.033 40 H 0.027 0.973 41 H 0.265 0.735 42 H 0.091 0.909 43 H 0.102 0.898 44 H 0.069 0.931 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.287 13.144 0.259 24.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.299 3.701 3 O -0.478 6.478 4 N -0.347 5.347 5 C -0.026 4.026 6 C -0.028 4.028 7 N -0.349 5.349 8 C 0.319 3.681 9 O -0.430 6.430 10 C -0.051 4.051 11 H 0.081 0.919 12 C -0.191 4.191 13 N -0.261 5.261 14 C -0.101 4.101 15 C 0.081 3.919 16 C -0.564 4.564 17 H 0.073 0.927 18 C -0.192 4.192 19 N -0.570 5.570 20 Si 0.789 3.211 21 H -0.198 1.198 22 H -0.205 1.205 23 H -0.194 1.194 24 C -0.029 4.029 25 C -0.028 4.028 26 H 0.133 0.867 27 H 0.111 0.889 28 H 0.128 0.872 29 H 0.091 0.909 30 H 0.157 0.843 31 H 0.113 0.887 32 H 0.108 0.892 33 H 0.071 0.929 34 H 0.082 0.918 35 H 0.109 0.891 36 H 0.033 0.967 37 H 0.076 0.924 38 H 0.080 0.920 39 H -0.015 1.015 40 H 0.045 0.955 41 H 0.074 0.926 42 H 0.109 0.891 43 H 0.120 0.880 44 H 0.088 0.912 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -20.327 12.756 0.559 24.005 hybrid contribution 1.314 -0.251 -0.753 1.535 sum -19.013 12.505 -0.193 22.757 Atomic orbital electron populations 1.22014 0.88042 1.06227 1.06523 1.21664 0.92413 0.82104 0.73918 1.90702 1.72047 1.32716 1.52378 1.48232 1.06996 1.06883 1.72547 1.22393 0.99626 0.82409 0.98195 1.22134 0.79086 1.02067 0.99549 1.48133 1.07818 1.05574 1.73326 1.20568 0.89638 0.83193 0.74741 1.90652 1.70285 1.32281 1.49827 1.21687 0.91604 0.92908 0.98871 0.91852 1.21772 1.01733 1.02628 0.92998 1.61837 1.13023 1.32358 1.18904 1.22120 0.98952 1.00729 0.88293 1.19520 0.81266 0.95394 0.95675 1.21442 0.91999 0.97652 1.45297 0.92654 1.25792 0.96591 1.01453 0.95324 1.70046 1.01672 1.35691 1.49631 0.85457 0.77653 0.79572 0.78395 1.19822 1.20493 1.19448 1.22404 0.98426 0.82929 0.99161 1.22011 0.80897 1.01537 0.98338 0.86717 0.88945 0.87155 0.90935 0.84293 0.88667 0.89232 0.92943 0.91823 0.89124 0.96709 0.92425 0.91964 1.01497 0.95508 0.92619 0.89061 0.87972 0.91232 0.88365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.23 9.42 71.23 0.67 -0.56 16 2 C 0.51 8.81 7.80 87.66 0.68 9.49 16 3 O -0.60 -16.23 16.52 -3.03 -0.05 -16.28 16 4 N -0.61 -9.60 2.95 -817.17 -2.41 -12.01 16 5 C 0.10 1.07 6.44 86.42 0.56 1.63 16 6 C 0.09 1.49 6.58 86.42 0.57 2.06 16 7 N -0.61 -13.55 2.94 -817.12 -2.40 -15.95 16 8 C 0.53 16.77 5.88 87.66 0.52 17.29 16 9 O -0.55 -21.67 14.92 -3.02 -0.05 -21.71 16 10 C 0.06 2.13 1.61 44.17 0.07 2.20 16 11 H 0.06 2.03 6.53 -2.39 -0.02 2.01 16 12 C -0.13 -4.31 8.37 71.98 0.60 -3.70 16 13 N -0.54 -24.08 4.32 -906.06 -3.92 -28.00 16 14 C 0.05 1.97 9.03 127.69 1.15 3.13 16 15 C 0.21 10.89 4.45 85.56 0.38 11.27 16 16 C -0.53 -30.22 8.53 25.60 0.22 -30.00 16 17 H 0.06 3.21 7.10 -2.91 -0.02 3.19 16 18 C 0.01 0.38 5.46 84.66 0.46 0.84 16 19 N -0.93 -55.17 13.29 21.45 0.28 -54.89 16 20 Si 0.96 44.76 29.54 68.60 2.03 46.79 16 21 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 22 H -0.28 -12.57 7.11 99.48 0.71 -11.87 16 23 H -0.27 -12.32 7.11 99.48 0.71 -11.61 16 24 C 0.09 1.67 6.02 86.56 0.52 2.20 16 25 C 0.10 1.73 6.60 86.57 0.57 2.30 16 26 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 27 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 28 H 0.11 0.22 6.26 -2.39 -0.01 0.21 16 29 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.14 0.48 5.46 -2.39 -0.01 0.46 16 31 H 0.10 1.80 7.02 -2.39 -0.02 1.78 16 32 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.06 2.24 6.44 -2.39 -0.02 2.22 16 35 H 0.09 2.15 7.38 -2.39 -0.02 2.13 16 36 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.06 2.58 6.88 -2.39 -0.02 2.56 16 38 H 0.06 2.40 6.27 -2.38 -0.01 2.38 16 39 H -0.03 -1.83 8.12 -2.39 -0.02 -1.85 16 40 H 0.03 1.47 5.79 -2.39 -0.01 1.46 16 41 H 0.26 14.78 8.31 -92.70 -0.77 14.01 16 42 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.10 1.88 5.09 -2.39 -0.01 1.86 16 44 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 45 H 0.10 1.94 7.02 -2.38 -0.02 1.92 16 Total: -1.00 -77.74 350.81 1.45 -76.29 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: 0.99 Total: 7.61 kcal Atomic # 6 Polarization: 11.18 SS G_CDS: 6.98 Total: 18.15 kcal Atomic # 7 Polarization: -102.40 SS G_CDS: -8.44 Total: -110.85 kcal Atomic # 8 Polarization: -37.89 SS G_CDS: -0.10 Total: -37.99 kcal Atomic # 14 Polarization: 44.76 SS G_CDS: 2.03 Total: 46.79 kcal Total: -77.74 1.45 -76.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177188802.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.140 kcal (2) G-P(sol) polarization free energy of solvation -77.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds