Wall clock time and date at job start Tue Mar 31 2020 03:39:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.46857 * 2 1 4 4 C 1.46498 * 120.00093 * 90.00146 * 3 2 1 5 5 C 1.50706 * 109.46936 * 90.00047 * 4 3 2 6 6 H 1.08003 * 120.00031 * 359.97438 * 5 4 3 7 7 C 1.37874 * 119.99928 * 180.02562 * 5 4 3 8 8 N 1.31519 * 119.99915 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00277 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46934 * 269.99985 * 9 7 5 11 11 H 1.48500 * 109.46844 * 29.99798 * 9 7 5 12 12 H 1.48500 * 109.47188 * 149.99662 * 9 7 5 13 13 C 1.34781 * 119.99776 * 269.99780 * 3 2 1 14 14 O 1.21284 * 119.99804 * 179.97438 * 13 3 2 15 15 C 1.50699 * 120.00221 * 0.02562 * 13 3 2 16 16 N 1.46896 * 109.47307 * 174.40827 * 15 13 3 17 17 C 1.47194 * 110.99827 * 302.68003 * 16 15 13 18 18 C 1.52975 * 108.74196 * 192.35304 * 17 16 15 19 19 N 1.46006 * 110.04373 * 309.71641 * 18 17 16 20 20 C 1.46498 * 118.53441 * 198.14294 * 19 18 17 21 21 C 1.33711 * 122.92628 * 18.16583 * 19 18 17 22 22 O 1.21280 * 118.62423 * 178.31180 * 21 19 18 23 23 C 1.46900 * 111.00324 * 65.56495 * 16 15 13 24 24 H 1.09005 * 109.38778 * 306.49834 * 23 16 15 25 25 C 1.53007 * 109.38353 * 66.28575 * 23 16 15 26 26 H 1.09000 * 109.47066 * 299.99487 * 1 2 3 27 27 H 1.08996 * 109.47217 * 60.00295 * 1 2 3 28 28 H 1.09003 * 109.46953 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47066 * 240.00513 * 2 1 3 30 30 H 1.08993 * 109.47434 * 120.00188 * 2 1 3 31 31 H 1.08997 * 109.47084 * 330.00240 * 4 3 2 32 32 H 1.09000 * 109.47084 * 209.99463 * 4 3 2 33 33 H 0.96999 * 119.99915 * 0.02562 * 8 7 5 34 34 H 1.09003 * 109.46855 * 294.40679 * 15 13 3 35 35 H 1.09002 * 109.47189 * 54.40248 * 15 13 3 36 36 H 1.09007 * 109.59278 * 312.13729 * 17 16 15 37 37 H 1.09000 * 109.59772 * 72.59093 * 17 16 15 38 38 H 1.09003 * 109.36736 * 189.54183 * 18 17 16 39 39 H 1.09000 * 109.28156 * 69.83545 * 18 17 16 40 40 H 1.09004 * 109.46784 * 180.02562 * 20 19 18 41 41 H 1.09000 * 109.47203 * 300.01643 * 20 19 18 42 42 H 1.08991 * 109.47228 * 60.02328 * 20 19 18 43 43 H 1.09005 * 109.46759 * 59.99817 * 25 23 16 44 44 H 1.09000 * 109.46838 * 179.97438 * 25 23 16 45 45 H 1.09001 * 109.47103 * 300.00069 * 25 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 1.2687 5 6 3.6858 1.8351 1.7037 6 1 4.3427 1.2303 1.0960 7 6 4.1492 2.3897 2.8778 8 7 3.3491 3.1258 3.6180 9 14 5.9132 2.0957 3.4174 10 1 5.9761 0.8746 4.2600 11 1 6.7735 1.9160 2.2204 12 1 6.3923 3.2629 4.2006 13 6 2.2429 2.0166 -1.1673 14 8 2.6467 3.1602 -1.1673 15 6 1.9913 1.3063 -2.4724 16 7 2.1805 2.2459 -3.5856 17 6 1.2958 3.4141 -3.4460 18 6 1.3023 4.1954 -4.7611 19 7 2.6760 4.4436 -5.1890 20 6 2.9216 5.4962 -6.1779 21 6 3.7198 3.7527 -4.7189 22 8 4.8247 4.0031 -5.1515 23 6 3.5811 2.6793 -3.6766 24 1 3.9028 3.0690 -2.7107 25 6 4.4581 1.4856 -4.0601 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.5817 1.6877 2.0284 32 1 2.0955 3.1411 1.1383 33 1 2.4330 3.2782 3.3380 34 1 2.6902 0.4762 -2.5748 35 1 0.9701 0.9255 -2.4878 36 1 0.2821 3.0804 -3.2239 37 1 1.6577 4.0525 -2.6401 38 1 0.7903 5.1471 -4.6187 39 1 0.7842 3.6170 -5.5260 40 1 3.9894 5.5543 -6.3891 41 1 2.3818 5.2652 -7.0962 42 1 2.5766 6.4522 -5.7842 43 1 4.1352 1.0924 -5.0241 44 1 5.4978 1.8057 -4.1285 45 1 4.3660 0.7084 -3.3014 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000186966289.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:38 Heat of formation + Delta-G solvation = -51.580363 kcal Electronic energy + Delta-G solvation = -25895.398414 eV Core-core repulsion = 22334.530982 eV Total energy + Delta-G solvation = -3560.867432 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.85616 -39.37003 -36.94779 -35.74047 -35.18789 -33.15806 -31.25598 -30.23015 -30.15130 -27.42174 -26.96319 -25.63518 -23.22347 -23.10407 -22.87142 -21.91737 -18.97271 -18.40159 -17.34451 -17.01934 -16.63233 -16.40020 -15.78494 -15.52287 -15.08567 -14.89874 -14.21230 -13.87853 -13.72724 -13.68455 -13.57390 -13.03937 -12.87423 -12.64954 -12.48936 -12.40476 -12.15700 -12.11015 -11.83009 -11.63647 -11.44205 -11.34741 -11.20622 -11.08374 -10.87208 -10.77827 -10.59179 -10.14929 -9.91669 -9.63536 -9.19813 -8.73510 -8.43643 -8.06922 -7.75005 -6.44027 -4.16654 2.72449 2.99713 3.11574 3.39228 3.45648 3.60013 3.69082 3.76235 4.49326 4.50467 4.72736 4.86251 4.95005 5.13852 5.20222 5.23755 5.29792 5.31616 5.38327 5.42553 5.46926 5.48415 5.58620 5.59931 5.61409 5.75729 5.87037 5.88123 6.02239 6.03744 6.07747 6.27408 6.30482 6.36931 6.66733 6.77300 6.81606 7.03406 7.28300 7.40706 7.96718 8.14860 8.21818 8.36285 8.70403 8.83457 9.53159 10.93367 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.015692 B = 0.004767 C = 0.004174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.959487 B = 5872.381246 C = 6706.610363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.105 3.895 3 N -0.587 5.587 4 C 0.235 3.765 5 C -0.606 4.606 6 H 0.051 0.949 7 C 0.021 3.979 8 N -0.909 5.909 9 Si 1.073 2.927 10 H -0.287 1.287 11 H -0.289 1.289 12 H -0.283 1.283 13 C 0.475 3.525 14 O -0.543 6.543 15 C 0.028 3.972 16 N -0.504 5.504 17 C 0.015 3.985 18 C 0.124 3.876 19 N -0.609 5.609 20 C 0.073 3.927 21 C 0.534 3.466 22 O -0.553 6.553 23 C 0.048 3.952 24 H 0.114 0.886 25 C -0.129 4.129 26 H 0.059 0.941 27 H 0.051 0.949 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.021 0.979 32 H 0.032 0.968 33 H 0.267 0.733 34 H 0.107 0.893 35 H 0.104 0.896 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.077 0.923 39 H 0.069 0.931 40 H 0.089 0.911 41 H 0.057 0.943 42 H 0.058 0.942 43 H 0.061 0.939 44 H 0.072 0.928 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.072 -4.204 -16.002 18.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.020 4.020 3 N -0.318 5.318 4 C 0.115 3.885 5 C -0.645 4.645 6 H 0.069 0.931 7 C -0.183 4.183 8 N -0.545 5.545 9 Si 0.901 3.099 10 H -0.214 1.214 11 H -0.215 1.215 12 H -0.208 1.208 13 C 0.261 3.739 14 O -0.422 6.422 15 C -0.104 4.104 16 N -0.228 5.228 17 C -0.113 4.113 18 C 0.001 3.999 19 N -0.343 5.343 20 C -0.069 4.069 21 C 0.323 3.677 22 O -0.430 6.430 23 C -0.063 4.063 24 H 0.131 0.869 25 C -0.187 4.187 26 H 0.078 0.922 27 H 0.070 0.930 28 H 0.082 0.918 29 H 0.086 0.914 30 H 0.102 0.898 31 H 0.038 0.962 32 H 0.050 0.950 33 H 0.077 0.923 34 H 0.125 0.875 35 H 0.122 0.878 36 H 0.107 0.893 37 H 0.102 0.898 38 H 0.095 0.905 39 H 0.087 0.913 40 H 0.107 0.893 41 H 0.076 0.924 42 H 0.076 0.924 43 H 0.080 0.920 44 H 0.091 0.909 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.309 -3.376 -15.464 17.039 hybrid contribution -1.188 -0.045 -0.321 1.231 sum -7.497 -3.421 -15.785 17.806 Atomic orbital electron populations 1.22214 0.96560 1.01700 1.02213 1.21458 0.93604 0.83904 1.02995 1.48215 1.62817 1.13256 1.07558 1.19331 0.96968 0.93015 0.79138 1.22243 0.96851 1.35793 1.09623 0.93053 1.25799 1.05843 0.93381 0.93317 1.70787 1.07838 1.36234 1.39627 0.83488 0.74250 0.76500 0.75707 1.21382 1.21461 1.20841 1.21567 0.78657 0.87438 0.86241 1.90576 1.46496 1.18335 1.86840 1.22451 1.04308 0.96536 0.87061 1.63045 1.04872 1.14915 1.40015 1.22769 0.98132 0.93017 0.97374 1.21475 0.82207 0.99740 0.96474 1.47299 1.07388 1.36430 1.43141 1.21707 1.04126 0.89794 0.91312 1.20101 0.83870 0.81960 0.81792 1.90658 1.25162 1.67957 1.59247 1.22048 0.89942 0.94951 0.99355 0.86858 1.21668 0.99390 0.95948 1.01685 0.92213 0.92986 0.91848 0.91398 0.89844 0.96154 0.95017 0.92262 0.87547 0.87821 0.89288 0.89782 0.90496 0.91317 0.89263 0.92410 0.92382 0.92008 0.90860 0.91812 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.00 10.18 37.16 0.38 -1.62 16 2 C 0.10 1.53 5.85 -4.04 -0.02 1.50 16 3 N -0.59 -11.50 2.46 -175.06 -0.43 -11.93 16 4 C 0.24 5.87 4.47 -5.19 -0.02 5.85 16 5 C -0.61 -16.96 9.39 -34.44 -0.32 -17.28 16 6 H 0.05 1.46 7.81 -52.48 -0.41 1.05 16 7 C 0.02 0.60 5.46 -17.82 -0.10 0.50 16 8 N -0.91 -27.41 13.65 55.43 0.76 -26.66 16 9 Si 1.07 25.56 29.90 -169.99 -5.08 20.47 16 10 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 C 0.47 8.93 7.01 -10.98 -0.08 8.85 16 14 O -0.54 -12.36 11.21 5.55 0.06 -12.29 16 15 C 0.03 0.38 4.15 -4.98 -0.02 0.36 16 16 N -0.50 -7.00 4.69 -229.49 -1.08 -8.07 16 17 C 0.02 0.20 4.94 -3.68 -0.02 0.18 16 18 C 0.12 1.36 6.64 -4.32 -0.03 1.34 16 19 N -0.61 -8.34 3.23 -182.49 -0.59 -8.92 16 20 C 0.07 0.81 10.55 59.85 0.63 1.44 16 21 C 0.53 8.98 7.13 -11.67 -0.08 8.90 16 22 O -0.55 -10.70 15.30 5.56 0.09 -10.61 16 23 C 0.05 0.78 2.26 -69.07 -0.16 0.62 16 24 H 0.11 2.28 5.55 -51.93 -0.29 1.99 16 25 C -0.13 -1.85 8.85 37.16 0.33 -1.52 16 26 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.05 0.57 7.13 -51.93 -0.37 0.20 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.80 6.60 -51.93 -0.34 0.46 16 30 H 0.08 1.32 8.07 -51.93 -0.42 0.90 16 31 H 0.02 0.51 7.94 -51.93 -0.41 0.10 16 32 H 0.03 0.89 7.29 -51.93 -0.38 0.51 16 33 H 0.27 7.98 7.22 -40.82 -0.29 7.69 16 34 H 0.11 1.32 5.78 -51.93 -0.30 1.02 16 35 H 0.10 1.14 6.88 -51.93 -0.36 0.78 16 36 H 0.09 0.97 8.06 -51.93 -0.42 0.56 16 37 H 0.08 1.41 5.72 -51.93 -0.30 1.11 16 38 H 0.08 0.70 8.13 -51.93 -0.42 0.27 16 39 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.09 1.14 6.67 -51.93 -0.35 0.79 16 41 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.07 1.11 7.80 -51.93 -0.41 0.70 16 45 H 0.06 0.84 6.44 -51.93 -0.33 0.51 16 LS Contribution 350.58 15.07 5.28 5.28 Total: -1.00 -34.68 350.58 -7.63 -42.31 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -7.13 Total: 1.31 kcal Atomic # 6 Polarization: 8.62 SS G_CDS: 0.49 Total: 9.11 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: -1.34 Total: -55.58 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: 0.15 Total: -22.91 kcal Atomic # 14 Polarization: 25.56 SS G_CDS: -5.08 Total: 20.47 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.68 -7.63 -42.31 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186966289.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.273 kcal (2) G-P(sol) polarization free energy of solvation -34.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds