Wall clock time and date at job start Tue Mar 31 2020 03:39:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46503 * 109.46857 * 2 1 4 4 C 1.46498 * 120.00093 * 90.00146 * 3 2 1 5 5 C 1.50706 * 109.46936 * 90.00047 * 4 3 2 6 6 H 1.08003 * 120.00031 * 359.97438 * 5 4 3 7 7 C 1.37874 * 119.99928 * 180.02562 * 5 4 3 8 8 N 1.31519 * 119.99915 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00277 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.46934 * 269.99985 * 9 7 5 11 11 H 1.48500 * 109.46844 * 29.99798 * 9 7 5 12 12 H 1.48500 * 109.47188 * 149.99662 * 9 7 5 13 13 C 1.34781 * 119.99776 * 269.99780 * 3 2 1 14 14 O 1.21284 * 119.99804 * 179.97438 * 13 3 2 15 15 C 1.50699 * 120.00221 * 0.02562 * 13 3 2 16 16 N 1.46896 * 109.47307 * 174.40827 * 15 13 3 17 17 C 1.47194 * 110.99827 * 302.68003 * 16 15 13 18 18 C 1.52975 * 108.74196 * 192.35304 * 17 16 15 19 19 N 1.46006 * 110.04373 * 309.71641 * 18 17 16 20 20 C 1.46498 * 118.53441 * 198.14294 * 19 18 17 21 21 C 1.33711 * 122.92628 * 18.16583 * 19 18 17 22 22 O 1.21280 * 118.62423 * 178.31180 * 21 19 18 23 23 C 1.46900 * 111.00324 * 65.56495 * 16 15 13 24 24 H 1.09005 * 109.38778 * 306.49834 * 23 16 15 25 25 C 1.53007 * 109.38353 * 66.28575 * 23 16 15 26 26 H 1.09000 * 109.47066 * 299.99487 * 1 2 3 27 27 H 1.08996 * 109.47217 * 60.00295 * 1 2 3 28 28 H 1.09003 * 109.46953 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47066 * 240.00513 * 2 1 3 30 30 H 1.08993 * 109.47434 * 120.00188 * 2 1 3 31 31 H 1.08997 * 109.47084 * 330.00240 * 4 3 2 32 32 H 1.09000 * 109.47084 * 209.99463 * 4 3 2 33 33 H 0.96999 * 119.99915 * 0.02562 * 8 7 5 34 34 H 1.09003 * 109.46855 * 294.40679 * 15 13 3 35 35 H 1.09002 * 109.47189 * 54.40248 * 15 13 3 36 36 H 1.09007 * 109.59278 * 312.13729 * 17 16 15 37 37 H 1.09000 * 109.59772 * 72.59093 * 17 16 15 38 38 H 1.09003 * 109.36736 * 189.54183 * 18 17 16 39 39 H 1.09000 * 109.28156 * 69.83545 * 18 17 16 40 40 H 1.09004 * 109.46784 * 180.02562 * 20 19 18 41 41 H 1.09000 * 109.47203 * 300.01643 * 20 19 18 42 42 H 1.08991 * 109.47228 * 60.02328 * 20 19 18 43 43 H 1.09005 * 109.46759 * 59.99817 * 25 23 16 44 44 H 1.09000 * 109.46838 * 179.97438 * 25 23 16 45 45 H 1.09001 * 109.47103 * 300.00069 * 25 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2625 2.0719 1.2687 5 6 3.6858 1.8351 1.7037 6 1 4.3427 1.2303 1.0960 7 6 4.1492 2.3897 2.8778 8 7 3.3491 3.1258 3.6180 9 14 5.9132 2.0957 3.4174 10 1 5.9761 0.8746 4.2600 11 1 6.7735 1.9160 2.2204 12 1 6.3923 3.2629 4.2006 13 6 2.2429 2.0166 -1.1673 14 8 2.6467 3.1602 -1.1673 15 6 1.9913 1.3063 -2.4724 16 7 2.1805 2.2459 -3.5856 17 6 1.2958 3.4141 -3.4460 18 6 1.3023 4.1954 -4.7611 19 7 2.6760 4.4436 -5.1890 20 6 2.9216 5.4962 -6.1779 21 6 3.7198 3.7527 -4.7189 22 8 4.8247 4.0031 -5.1515 23 6 3.5811 2.6793 -3.6766 24 1 3.9028 3.0690 -2.7107 25 6 4.4581 1.4856 -4.0601 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 1.5817 1.6877 2.0284 32 1 2.0955 3.1411 1.1383 33 1 2.4330 3.2782 3.3380 34 1 2.6902 0.4762 -2.5748 35 1 0.9701 0.9255 -2.4878 36 1 0.2821 3.0804 -3.2239 37 1 1.6577 4.0525 -2.6401 38 1 0.7903 5.1471 -4.6187 39 1 0.7842 3.6170 -5.5260 40 1 3.9894 5.5543 -6.3891 41 1 2.3818 5.2652 -7.0962 42 1 2.5766 6.4522 -5.7842 43 1 4.1352 1.0924 -5.0241 44 1 5.4978 1.8057 -4.1285 45 1 4.3660 0.7084 -3.3014 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000186966289.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:37 Heat of formation + Delta-G solvation = -77.577498 kcal Electronic energy + Delta-G solvation = -25896.525735 eV Core-core repulsion = 22334.530982 eV Total energy + Delta-G solvation = -3561.994752 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.09260 -40.77012 -38.25984 -37.07100 -36.48839 -35.22162 -32.44030 -31.62020 -31.25666 -28.97657 -28.05555 -27.07740 -25.06603 -24.28223 -23.96072 -23.27894 -20.36832 -19.72118 -18.95981 -18.48887 -17.99914 -17.68651 -17.08221 -16.81270 -16.34043 -16.22811 -15.72489 -15.39845 -15.20089 -14.97050 -14.78752 -14.29742 -14.13046 -13.91441 -13.84805 -13.51935 -13.46099 -13.34356 -13.19203 -13.05473 -12.84402 -12.59475 -12.47841 -12.45290 -12.27680 -12.11754 -12.03649 -11.93019 -11.34144 -11.20637 -10.89591 -10.63996 -9.78934 -9.50022 -9.37099 -8.71370 -6.47692 1.44756 1.45602 1.55387 1.68272 1.72658 1.95644 2.25072 2.50074 2.59412 3.07197 3.38679 3.60320 3.75576 3.88243 4.06858 4.20320 4.25427 4.30631 4.36759 4.42493 4.44343 4.49370 4.57817 4.59447 4.64979 4.72769 4.75794 4.84200 4.87193 4.89131 4.96010 4.97473 4.99749 5.15957 5.33209 5.34751 5.57105 5.58085 5.69376 5.80326 6.12183 6.27337 6.42968 6.67374 7.00224 7.25462 7.37959 8.63104 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.015692 B = 0.004767 C = 0.004174 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1783.959487 B = 5872.381246 C = 6706.610363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.097 3.903 3 N -0.595 5.595 4 C 0.250 3.750 5 C -0.614 4.614 6 H 0.044 0.956 7 C -0.030 4.030 8 N -0.932 5.932 9 Si 1.117 2.883 10 H -0.261 1.261 11 H -0.281 1.281 12 H -0.284 1.284 13 C 0.466 3.534 14 O -0.590 6.590 15 C 0.040 3.960 16 N -0.486 5.486 17 C 0.012 3.988 18 C 0.123 3.877 19 N -0.608 5.608 20 C 0.070 3.930 21 C 0.523 3.477 22 O -0.591 6.591 23 C 0.049 3.951 24 H 0.069 0.931 25 C -0.123 4.123 26 H 0.034 0.966 27 H 0.068 0.932 28 H 0.097 0.903 29 H 0.106 0.894 30 H 0.066 0.934 31 H 0.014 0.986 32 H -0.010 1.010 33 H 0.255 0.745 34 H 0.126 0.874 35 H 0.145 0.855 36 H 0.118 0.882 37 H 0.041 0.959 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.066 0.934 41 H 0.088 0.912 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.056 0.944 45 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.581 -6.260 -18.110 21.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.025 4.025 3 N -0.326 5.326 4 C 0.128 3.872 5 C -0.652 4.652 6 H 0.062 0.938 7 C -0.229 4.229 8 N -0.570 5.570 9 Si 0.938 3.062 10 H -0.186 1.186 11 H -0.207 1.207 12 H -0.209 1.209 13 C 0.254 3.746 14 O -0.472 6.472 15 C -0.091 4.091 16 N -0.210 5.210 17 C -0.116 4.116 18 C 0.001 3.999 19 N -0.340 5.340 20 C -0.072 4.072 21 C 0.311 3.689 22 O -0.472 6.472 23 C -0.062 4.062 24 H 0.086 0.914 25 C -0.181 4.181 26 H 0.053 0.947 27 H 0.087 0.913 28 H 0.115 0.885 29 H 0.124 0.876 30 H 0.085 0.915 31 H 0.032 0.968 32 H 0.008 0.992 33 H 0.065 0.935 34 H 0.144 0.856 35 H 0.162 0.838 36 H 0.136 0.864 37 H 0.060 0.940 38 H 0.118 0.882 39 H 0.117 0.883 40 H 0.085 0.915 41 H 0.107 0.893 42 H 0.093 0.907 43 H 0.097 0.903 44 H 0.075 0.925 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -7.893 -5.465 -17.603 20.050 hybrid contribution -0.796 0.650 0.298 1.070 sum -8.689 -4.815 -17.305 19.953 Atomic orbital electron populations 1.22151 0.94094 1.03742 1.01796 1.21804 0.95610 0.81033 1.04078 1.48278 1.63331 1.15107 1.05893 1.18763 0.95393 0.91242 0.81833 1.22554 0.98192 1.35093 1.09404 0.93801 1.27257 1.09168 0.92670 0.93767 1.70902 1.07665 1.37934 1.40451 0.82931 0.69866 0.77381 0.75997 1.18574 1.20654 1.20925 1.22658 0.77287 0.87064 0.87548 1.90588 1.48236 1.20780 1.87636 1.22646 1.07091 0.96092 0.83281 1.63153 1.03470 1.15105 1.39271 1.22839 0.99006 0.92394 0.97328 1.21722 0.80923 1.01208 0.96012 1.47489 1.07852 1.35903 1.42753 1.21875 1.03298 0.89915 0.92082 1.20246 0.84159 0.82471 0.82017 1.90630 1.26666 1.69209 1.60707 1.21899 0.91643 0.95555 0.97135 0.91367 1.21621 0.98157 0.95420 1.02876 0.94713 0.91347 0.88480 0.87551 0.91532 0.96764 0.99229 0.93543 0.85599 0.83773 0.86420 0.94042 0.88165 0.88264 0.91527 0.89312 0.90670 0.90301 0.92507 0.90643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.33 10.18 71.98 0.73 -2.59 16 2 C 0.10 2.63 5.85 86.38 0.51 3.14 16 3 N -0.60 -23.35 2.46 -826.14 -2.03 -25.38 16 4 C 0.25 13.04 4.47 85.64 0.38 13.42 16 5 C -0.61 -35.40 9.39 25.60 0.24 -35.16 16 6 H 0.04 2.54 7.81 -2.91 -0.02 2.51 16 7 C -0.03 -1.77 5.46 84.65 0.46 -1.31 16 8 N -0.93 -58.11 13.65 21.45 0.29 -57.81 16 9 Si 1.12 51.89 29.90 68.60 2.05 53.94 16 10 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 11 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 12 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 13 C 0.47 17.45 7.01 87.66 0.61 18.07 16 14 O -0.59 -28.13 11.21 -3.04 -0.03 -28.16 16 15 C 0.04 0.96 4.15 85.56 0.36 1.32 16 16 N -0.49 -12.43 4.69 -879.98 -4.12 -16.55 16 17 C 0.01 0.30 4.94 86.24 0.43 0.72 16 18 C 0.12 2.33 6.64 86.46 0.57 2.90 16 19 N -0.61 -15.75 3.23 -850.25 -2.74 -18.49 16 20 C 0.07 1.43 10.55 127.77 1.35 2.78 16 21 C 0.52 17.64 7.13 87.68 0.62 18.26 16 22 O -0.59 -23.59 15.30 -3.03 -0.05 -23.64 16 23 C 0.05 1.60 2.26 44.03 0.10 1.70 16 24 H 0.07 2.90 5.55 -2.38 -0.01 2.89 16 25 C -0.12 -3.43 8.85 71.98 0.64 -2.79 16 26 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.07 1.20 7.13 -2.39 -0.02 1.19 16 28 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.11 2.08 6.60 -2.39 -0.02 2.06 16 30 H 0.07 2.03 8.07 -2.39 -0.02 2.01 16 31 H 0.01 0.76 7.94 -2.39 -0.02 0.74 16 32 H -0.01 -0.62 7.29 -2.39 -0.02 -0.64 16 33 H 0.26 16.05 7.22 -92.71 -0.67 15.38 16 34 H 0.13 2.63 5.78 -2.39 -0.01 2.62 16 35 H 0.14 2.39 6.88 -2.39 -0.02 2.37 16 36 H 0.12 2.16 8.06 -2.38 -0.02 2.14 16 37 H 0.04 1.41 5.72 -2.39 -0.01 1.40 16 38 H 0.10 1.47 8.13 -2.39 -0.02 1.45 16 39 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.07 1.69 6.67 -2.38 -0.02 1.68 16 41 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 43 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 44 H 0.06 1.75 7.80 -2.39 -0.02 1.73 16 45 H 0.07 1.87 6.44 -2.39 -0.02 1.85 16 Total: -1.00 -82.29 350.58 1.45 -80.84 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: 1.08 Total: 14.80 kcal Atomic # 6 Polarization: 13.45 SS G_CDS: 7.00 Total: 20.45 kcal Atomic # 7 Polarization: -109.63 SS G_CDS: -8.60 Total: -118.23 kcal Atomic # 8 Polarization: -51.72 SS G_CDS: -0.08 Total: -51.80 kcal Atomic # 14 Polarization: 51.89 SS G_CDS: 2.05 Total: 53.94 kcal Total: -82.29 1.45 -80.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000186966289.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.259 kcal (2) G-P(sol) polarization free energy of solvation -82.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds