Wall clock time and date at job start Tue Mar 31 2020 03:56:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 O 1.21289 * 119.99469 * 2 1 4 4 N 1.34771 * 120.00404 * 179.97438 * 2 1 3 5 5 C 1.46498 * 120.00199 * 179.97438 * 4 2 1 6 6 H 1.09001 * 110.64372 * 323.30671 * 5 4 2 7 7 C 1.54596 * 110.72099 * 86.45733 * 5 4 2 8 8 C 1.53996 * 105.13815 * 140.31724 * 7 5 4 9 9 N 1.47899 * 107.05784 * 1.22224 * 8 7 5 10 10 C 1.46897 * 111.00135 * 214.15491 * 9 8 7 11 11 C 1.53001 * 109.47538 * 175.70895 * 10 9 8 12 12 C 1.50695 * 109.47154 * 174.90211 * 11 10 9 13 13 O 1.21278 * 120.00492 * 359.97438 * 12 11 10 14 14 N 1.34778 * 119.99891 * 179.97438 * 12 11 10 15 15 C 1.46506 * 119.99911 * 0.02562 * 14 12 11 16 16 C 1.46500 * 120.00114 * 179.97438 * 14 12 11 17 17 C 1.50699 * 109.47223 * 269.99785 * 16 14 12 18 18 H 1.07998 * 120.00137 * 0.02562 * 17 16 14 19 19 C 1.37876 * 119.99864 * 179.72340 * 17 16 14 20 20 N 1.31517 * 120.00054 * 180.28050 * 19 17 16 21 21 Si 1.86801 * 120.00069 * 0.27925 * 19 17 16 22 22 H 1.48499 * 109.47004 * 89.99987 * 21 19 17 23 23 H 1.48495 * 109.47182 * 209.99879 * 21 19 17 24 24 H 1.48499 * 109.47043 * 329.99987 * 21 19 17 25 25 C 1.48529 * 105.82114 * 334.67385 * 9 8 7 26 26 H 1.08999 * 109.46562 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47073 * 300.00318 * 1 2 3 28 28 H 1.08999 * 109.46885 * 60.00338 * 1 2 3 29 29 H 0.97001 * 119.99970 * 0.02562 * 4 2 1 30 30 H 1.08995 * 110.31434 * 21.39892 * 7 5 4 31 31 H 1.08998 * 110.30732 * 259.22818 * 7 5 4 32 32 H 1.09001 * 109.91699 * 241.86976 * 8 7 5 33 33 H 1.09003 * 110.07953 * 120.66906 * 8 7 5 34 34 H 1.09004 * 109.46992 * 55.70637 * 10 9 8 35 35 H 1.09001 * 109.47110 * 295.71026 * 10 9 8 36 36 H 1.09005 * 109.46958 * 54.89695 * 11 10 9 37 37 H 1.08998 * 109.46682 * 294.90289 * 11 10 9 38 38 H 1.09004 * 109.46657 * 269.99980 * 15 14 12 39 39 H 1.09002 * 109.47175 * 29.99117 * 15 14 12 40 40 H 1.08996 * 109.47515 * 150.00226 * 15 14 12 41 41 H 1.09003 * 109.46893 * 150.00083 * 16 14 12 42 42 H 1.08993 * 109.46775 * 30.00548 * 16 14 12 43 43 H 0.97001 * 119.99910 * 179.97438 * 20 19 17 44 44 H 1.09001 * 110.66749 * 157.64280 * 25 9 8 45 45 H 1.09002 * 110.66271 * 280.77093 * 25 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.1134 1.0504 0.0000 4 7 2.1810 -1.1671 0.0005 5 6 3.6460 -1.1671 0.0000 6 1 4.0300 -0.3496 -0.6102 7 6 4.1935 -1.0767 1.4429 8 6 5.4059 -2.0258 1.4731 9 7 5.5478 -2.5917 0.1141 10 6 6.0373 -3.9757 0.1686 11 6 6.0695 -4.5614 -1.2445 12 6 6.6881 -5.9349 -1.2050 13 8 7.0665 -6.3995 -0.1506 14 7 6.8209 -6.6471 -2.3415 15 6 6.3642 -6.0857 -3.6154 16 6 7.4228 -7.9822 -2.3033 17 6 8.9126 -7.8674 -2.4991 18 1 9.3658 -6.8970 -2.6378 19 6 9.6977 -9.0007 -2.4951 20 7 10.9986 -8.9001 -2.6605 21 14 8.9139 -10.6792 -2.2546 22 1 8.5394 -11.2444 -3.5758 23 1 9.8807 -11.5855 -1.5845 24 1 7.6986 -10.5419 -1.4125 25 6 4.1941 -2.5294 -0.4940 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.6961 -2.0072 0.0005 30 1 3.4376 -1.4058 2.1558 31 1 4.5061 -0.0566 1.6657 32 1 5.2329 -2.8263 2.1925 33 1 6.3067 -1.4738 1.7415 34 1 5.3727 -4.5718 0.7939 35 1 7.0423 -3.9893 0.5904 36 1 6.6613 -3.9147 -1.8925 37 1 5.0530 -4.6316 -1.6318 38 1 5.3223 -6.3600 -3.7806 39 1 6.4538 -4.9997 -3.5868 40 1 6.9766 -6.4796 -4.4265 41 1 6.9980 -8.5951 -3.0983 42 1 7.2177 -8.4456 -1.3383 43 1 11.5510 -9.6974 -2.6573 44 1 4.2599 -2.5460 -1.5819 45 1 3.5721 -3.3482 -0.1325 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228261462.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:56:33 Heat of formation + Delta-G solvation = -64.411205 kcal Electronic energy + Delta-G solvation = -23990.852797 eV Core-core repulsion = 20429.428978 eV Total energy + Delta-G solvation = -3561.423819 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.34779 -39.31887 -38.49235 -35.13381 -34.80024 -32.82931 -32.39260 -30.54963 -29.34521 -28.42434 -27.83597 -25.90103 -23.83737 -22.13660 -21.69613 -20.96353 -20.41078 -18.39677 -17.32152 -17.08341 -16.96586 -16.52642 -15.85788 -15.50279 -15.36455 -15.12989 -14.59310 -14.36816 -14.04435 -13.72156 -13.58407 -13.26716 -13.00801 -12.80846 -12.74082 -12.43128 -12.30625 -12.04169 -11.99998 -11.83763 -11.75863 -11.66449 -11.33113 -10.98718 -10.91390 -10.87087 -10.52173 -10.25211 -10.11870 -9.55414 -9.45990 -9.03782 -8.62799 -8.60113 -7.72480 -6.09225 -4.08087 2.27496 2.76393 3.25722 3.32153 3.34015 3.38033 3.63507 4.06012 4.19945 4.38835 4.43574 4.49545 4.75054 4.77293 4.96638 4.97674 5.01802 5.05234 5.12464 5.20872 5.29044 5.33025 5.40368 5.50199 5.54620 5.64679 5.69267 5.73169 5.81335 5.84767 5.99467 6.05188 6.12984 6.16269 6.63571 6.68328 6.81728 6.95956 7.11386 7.31568 7.60280 7.85344 8.22536 8.46304 8.91611 8.97201 9.50837 11.04166 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.033147 B = 0.002541 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.530683 B =11014.644960 C =11330.438435 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.511 3.489 3 O -0.545 6.545 4 N -0.724 5.724 5 C 0.139 3.861 6 H 0.103 0.897 7 C -0.140 4.140 8 C 0.037 3.963 9 N -0.513 5.513 10 C 0.065 3.935 11 C -0.136 4.136 12 C 0.508 3.492 13 O -0.544 6.544 14 N -0.599 5.599 15 C 0.083 3.917 16 C 0.215 3.785 17 C -0.529 4.529 18 H 0.074 0.926 19 C 0.071 3.929 20 N -0.897 5.897 21 Si 0.876 3.124 22 H -0.275 1.275 23 H -0.284 1.284 24 H -0.264 1.264 25 C 0.027 3.973 26 H 0.075 0.925 27 H 0.094 0.906 28 H 0.095 0.905 29 H 0.401 0.599 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.049 0.951 33 H 0.084 0.916 34 H 0.043 0.957 35 H 0.091 0.909 36 H 0.099 0.901 37 H 0.083 0.917 38 H 0.044 0.956 39 H 0.062 0.938 40 H 0.075 0.925 41 H 0.025 0.975 42 H 0.040 0.960 43 H 0.264 0.736 44 H 0.091 0.909 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.048 14.535 3.669 26.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.298 3.702 3 O -0.422 6.422 4 N -0.377 5.377 5 C 0.034 3.966 6 H 0.121 0.879 7 C -0.179 4.179 8 C -0.091 4.091 9 N -0.238 5.238 10 C -0.064 4.064 11 C -0.176 4.176 12 C 0.294 3.706 13 O -0.422 6.422 14 N -0.330 5.330 15 C -0.061 4.061 16 C 0.094 3.906 17 C -0.567 4.567 18 H 0.092 0.908 19 C -0.131 4.131 20 N -0.535 5.535 21 Si 0.703 3.297 22 H -0.201 1.201 23 H -0.209 1.209 24 H -0.189 1.189 25 C -0.101 4.101 26 H 0.094 0.906 27 H 0.112 0.888 28 H 0.113 0.887 29 H 0.235 0.765 30 H 0.088 0.912 31 H 0.097 0.903 32 H 0.068 0.932 33 H 0.102 0.898 34 H 0.061 0.939 35 H 0.109 0.891 36 H 0.117 0.883 37 H 0.101 0.899 38 H 0.062 0.938 39 H 0.080 0.920 40 H 0.094 0.906 41 H 0.043 0.957 42 H 0.058 0.942 43 H 0.074 0.926 44 H 0.110 0.890 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -20.845 15.205 3.899 26.095 hybrid contribution -0.971 -1.906 0.427 2.182 sum -21.817 13.298 4.326 25.914 Atomic orbital electron populations 1.21859 0.91636 1.04239 1.05371 1.20840 0.90602 0.83490 0.75287 1.90744 1.70743 1.31361 1.49394 1.46160 1.07057 1.08856 1.75591 1.21885 0.79064 0.98826 0.96835 0.87871 1.22809 0.97396 1.00868 0.96857 1.22853 0.98640 0.97455 0.90181 1.64778 1.21737 1.19768 1.17496 1.22040 1.02114 0.86190 0.96008 1.21654 1.02008 0.95188 0.98797 1.20287 0.79545 0.86702 0.84074 1.90667 1.50135 1.71313 1.30036 1.47846 1.59819 1.19043 1.06339 1.21674 0.98670 0.98546 0.87226 1.19664 0.94262 0.79046 0.97603 1.21331 0.89872 0.95548 1.49953 0.90761 1.24874 0.94715 0.99036 0.94489 1.69901 1.04201 1.29487 1.49958 0.86849 0.79826 0.84329 0.78741 1.20113 1.20934 1.18894 1.23468 0.90323 0.95256 1.01098 0.90573 0.88752 0.88660 0.76459 0.91188 0.90337 0.93239 0.89760 0.93890 0.89085 0.88270 0.89896 0.93761 0.91972 0.90572 0.95724 0.94160 0.92561 0.89042 0.93098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.73 10.39 36.01 0.37 -0.36 16 2 C 0.51 4.28 7.94 -10.98 -0.09 4.19 16 3 O -0.55 -7.17 16.83 5.55 0.09 -7.08 16 4 N -0.72 -4.91 5.14 -52.01 -0.27 -5.18 16 5 C 0.14 1.21 3.35 -66.07 -0.22 0.99 16 6 H 0.10 1.10 7.70 -51.93 -0.40 0.70 16 7 C -0.14 -1.24 6.67 -25.37 -0.17 -1.41 16 8 C 0.04 0.36 6.70 -2.75 -0.02 0.35 16 9 N -0.51 -5.67 5.35 -230.46 -1.23 -6.91 16 10 C 0.06 0.86 4.19 -3.83 -0.02 0.85 16 11 C -0.14 -1.87 3.93 -27.89 -0.11 -1.98 16 12 C 0.51 10.03 7.67 -10.99 -0.08 9.95 16 13 O -0.54 -13.11 15.50 5.56 0.09 -13.02 16 14 N -0.60 -12.12 2.86 -182.95 -0.52 -12.65 16 15 C 0.08 1.23 10.24 59.85 0.61 1.84 16 16 C 0.21 5.24 4.23 -5.19 -0.02 5.22 16 17 C -0.53 -15.23 9.94 -34.44 -0.34 -15.57 16 18 H 0.07 2.35 8.06 -52.49 -0.42 1.93 16 19 C 0.07 2.08 5.47 -17.82 -0.10 1.99 16 20 N -0.90 -27.75 13.96 55.43 0.77 -26.98 16 21 Si 0.88 21.51 27.47 -169.99 -4.67 16.84 16 22 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 23 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.26 -6.33 6.54 56.52 0.37 -5.96 16 25 C 0.03 0.23 4.97 -1.90 -0.01 0.23 16 26 H 0.08 0.15 7.91 -51.93 -0.41 -0.27 16 27 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.40 1.63 8.36 -40.82 -0.34 1.29 16 30 H 0.07 0.57 8.05 -51.93 -0.42 0.16 16 31 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 32 H 0.05 0.49 7.67 -51.93 -0.40 0.09 16 33 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.04 0.59 7.97 -51.93 -0.41 0.17 16 35 H 0.09 1.41 7.95 -51.93 -0.41 1.00 16 36 H 0.10 1.31 7.40 -51.93 -0.38 0.92 16 37 H 0.08 0.92 7.14 -51.93 -0.37 0.54 16 38 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.06 0.76 6.44 -51.93 -0.33 0.43 16 40 H 0.08 1.19 8.07 -51.93 -0.42 0.77 16 41 H 0.02 0.56 7.51 -51.93 -0.39 0.17 16 42 H 0.04 1.06 6.47 -51.93 -0.34 0.73 16 43 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 44 H 0.09 0.75 7.77 -51.93 -0.40 0.34 16 45 H 0.05 0.40 7.89 -51.93 -0.41 -0.01 16 LS Contribution 364.91 15.07 5.50 5.50 Total: -1.00 -36.81 364.91 -7.98 -44.79 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -7.55 Total: -1.59 kcal Atomic # 6 Polarization: 6.46 SS G_CDS: -0.19 Total: 6.27 kcal Atomic # 7 Polarization: -50.46 SS G_CDS: -1.25 Total: -51.71 kcal Atomic # 8 Polarization: -20.28 SS G_CDS: 0.18 Total: -20.10 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -36.81 -7.98 -44.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228261462.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.620 kcal (2) G-P(sol) polarization free energy of solvation -36.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.977 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds