Wall clock time and date at job start Tue Mar 31 2020 03:46:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46507 * 109.47165 * 2 1 4 4 C 1.34773 * 119.99994 * 180.02562 * 3 2 1 5 5 O 1.21282 * 119.99996 * 359.97438 * 4 3 2 6 6 C 1.50700 * 120.00056 * 179.97438 * 4 3 2 7 7 C 1.52997 * 109.47227 * 179.97438 * 6 4 3 8 8 C 1.52996 * 109.47297 * 179.97438 * 7 6 4 9 9 C 1.50696 * 109.47218 * 179.97438 * 8 7 6 10 10 O 1.21282 * 120.00323 * 359.97438 * 9 8 7 11 11 N 1.34783 * 120.00050 * 179.97438 * 9 8 7 12 12 C 1.46967 * 120.59522 * 180.02562 * 11 9 8 13 13 C 1.53374 * 108.63231 * 235.25231 * 12 11 9 14 14 N 1.46972 * 108.63217 * 310.57203 * 13 12 11 15 15 C 1.36935 * 120.59045 * 235.20705 * 14 13 12 16 16 H 1.08002 * 119.99725 * 151.84492 * 15 14 13 17 17 C 1.38804 * 120.00405 * 331.57419 * 15 14 13 18 18 N 1.31622 * 119.99787 * 342.82520 * 17 15 14 19 19 Si 1.86800 * 120.00346 * 162.82771 * 17 15 14 20 20 H 1.48493 * 109.47374 * 89.99790 * 19 17 15 21 21 H 1.48496 * 109.47349 * 210.00137 * 19 17 15 22 22 H 1.48504 * 109.47003 * 329.99893 * 19 17 15 23 23 C 1.46962 * 118.81330 * 55.48066 * 14 13 12 24 24 C 1.46958 * 120.59366 * 0.02562 * 11 9 8 25 25 H 1.08993 * 109.47347 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47039 * 300.00459 * 1 2 3 27 27 H 1.09003 * 109.47358 * 59.99655 * 1 2 3 28 28 H 1.09000 * 109.47150 * 240.00062 * 2 1 3 29 29 H 1.09002 * 109.46936 * 119.99494 * 2 1 3 30 30 H 0.97003 * 119.99811 * 359.97438 * 3 2 1 31 31 H 1.09000 * 109.46957 * 59.99729 * 6 4 3 32 32 H 1.08994 * 109.47038 * 299.99626 * 6 4 3 33 33 H 1.09003 * 109.47039 * 59.99601 * 7 6 4 34 34 H 1.09003 * 109.47358 * 300.00405 * 7 6 4 35 35 H 1.09000 * 109.46880 * 60.00007 * 8 7 6 36 36 H 1.09000 * 109.47474 * 300.00011 * 8 7 6 37 37 H 1.08996 * 109.60899 * 115.50126 * 12 11 9 38 38 H 1.09006 * 109.74993 * 355.07456 * 12 11 9 39 39 H 1.09002 * 109.60640 * 190.83592 * 13 12 11 40 40 H 1.08999 * 109.75615 * 70.39807 * 13 12 11 41 41 H 0.96999 * 119.99847 * 179.97438 * 18 17 15 42 42 H 1.08998 * 109.60973 * 64.26416 * 23 14 13 43 43 H 1.08995 * 109.61395 * 184.77560 * 23 14 13 44 44 H 1.09002 * 109.60988 * 244.49705 * 24 11 9 45 45 H 1.09006 * 109.61277 * 4.83592 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 3.3434 1.6275 -0.0005 5 8 4.1315 0.7057 -0.0005 6 6 3.8457 3.0483 -0.0011 7 6 5.3757 3.0483 -0.0010 8 6 5.8857 4.4908 -0.0022 9 6 7.3927 4.4908 -0.0015 10 8 7.9992 3.4405 0.0004 11 7 8.0666 5.6580 -0.0029 12 6 9.5362 5.6732 -0.0027 13 6 10.0175 6.5081 1.1905 14 7 9.2959 7.7885 1.1892 15 6 9.9806 8.9743 1.1887 16 1 9.5367 9.8540 0.7466 17 6 11.2429 9.0472 1.7615 18 7 11.6454 8.1060 2.5889 19 14 12.3703 10.4810 1.3582 20 1 12.1387 11.5810 2.3284 21 1 13.7849 10.0371 1.4416 22 1 12.0835 10.9648 -0.0162 23 6 7.8263 7.7733 1.1947 24 6 7.3451 6.9383 -0.0045 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 1.3880 2.1186 -0.0004 31 1 3.4827 3.5624 0.8888 32 1 3.4822 3.5619 -0.8911 33 1 5.7391 2.5340 -0.8907 34 1 5.7390 2.5348 0.8892 35 1 5.5223 5.0054 0.8873 36 1 5.5225 5.0039 -0.8927 37 1 9.8975 6.1179 -0.9299 38 1 9.9151 4.6551 0.0867 39 1 11.0882 6.6916 1.1004 40 1 9.8145 5.9748 2.1191 41 1 12.5277 8.1568 2.9889 42 1 7.4686 7.3265 2.1223 43 1 7.4496 8.7923 1.1075 44 1 7.5507 7.4728 -0.9319 45 1 6.2741 6.7548 0.0821 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330841541.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:46:50 Heat of formation + Delta-G solvation = -60.262430 kcal Electronic energy + Delta-G solvation = -23916.288631 eV Core-core repulsion = 20355.044716 eV Total energy + Delta-G solvation = -3561.243915 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.01010 -39.48452 -36.83610 -35.65812 -34.25510 -33.85513 -31.23515 -31.14028 -30.39448 -28.41300 -26.73186 -24.07666 -23.45970 -22.80878 -21.98620 -20.58326 -20.23809 -18.53227 -17.33830 -16.92449 -16.35215 -16.28426 -15.93310 -15.50815 -15.20865 -14.79424 -14.64119 -13.94364 -13.76004 -13.66129 -13.36945 -13.26796 -13.06179 -12.98786 -12.53877 -12.26303 -12.09653 -11.95553 -11.74515 -11.71777 -11.40922 -11.17651 -10.80749 -10.79131 -10.69648 -10.57266 -10.24333 -10.04522 -9.95192 -9.83757 -9.37733 -9.26903 -8.58598 -8.19189 -6.70716 -5.84722 -3.30252 2.46932 2.89086 3.06513 3.33995 3.41471 3.43080 3.52983 4.43879 4.44757 4.62530 4.66257 4.70336 4.90647 4.91195 5.02417 5.21474 5.31722 5.34190 5.37227 5.39038 5.47780 5.49194 5.58902 5.64061 5.75639 5.78915 5.89405 6.11851 6.12290 6.18348 6.36875 6.39290 6.42461 6.52608 6.70250 6.90156 7.20408 7.28611 7.56503 7.72088 7.97626 8.02083 8.36415 8.64994 9.11983 9.74962 10.31838 11.22582 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.047343 B = 0.002344 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.285840 B =11944.456453 C =12226.465026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.112 3.888 3 N -0.738 5.738 4 C 0.510 3.490 5 O -0.533 6.533 6 C -0.140 4.140 7 C -0.088 4.088 8 C -0.138 4.138 9 C 0.506 3.494 10 O -0.553 6.553 11 N -0.599 5.599 12 C 0.087 3.913 13 C 0.158 3.842 14 N -0.591 5.591 15 C -0.258 4.258 16 H 0.067 0.933 17 C 0.003 3.997 18 N -0.900 5.900 19 Si 0.904 3.096 20 H -0.287 1.287 21 H -0.289 1.289 22 H -0.279 1.279 23 C 0.130 3.870 24 C 0.089 3.911 25 H 0.073 0.927 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.400 0.600 31 H 0.095 0.905 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.092 0.908 36 H 0.089 0.911 37 H 0.058 0.942 38 H 0.080 0.920 39 H 0.099 0.901 40 H 0.023 0.977 41 H 0.256 0.744 42 H 0.023 0.977 43 H 0.066 0.934 44 H 0.065 0.935 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.232 -8.619 -6.164 24.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.012 4.012 3 N -0.392 5.392 4 C 0.297 3.703 5 O -0.409 6.409 6 C -0.180 4.180 7 C -0.127 4.127 8 C -0.178 4.178 9 C 0.294 3.706 10 O -0.432 6.432 11 N -0.332 5.332 12 C -0.037 4.037 13 C 0.032 3.968 14 N -0.314 5.314 15 C -0.387 4.387 16 H 0.085 0.915 17 C -0.196 4.196 18 N -0.544 5.544 19 Si 0.734 3.266 20 H -0.214 1.214 21 H -0.215 1.215 22 H -0.204 1.204 23 C 0.003 3.997 24 C -0.036 4.036 25 H 0.092 0.908 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.234 0.766 31 H 0.113 0.887 32 H 0.112 0.888 33 H 0.095 0.905 34 H 0.096 0.904 35 H 0.110 0.890 36 H 0.108 0.892 37 H 0.077 0.923 38 H 0.098 0.902 39 H 0.117 0.883 40 H 0.041 0.959 41 H 0.066 0.934 42 H 0.041 0.959 43 H 0.085 0.915 44 H 0.083 0.917 45 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -21.147 -9.849 -6.066 24.104 hybrid contribution 0.210 1.235 -0.076 1.255 sum -20.936 -8.614 -6.142 23.458 Atomic orbital electron populations 1.22002 0.94483 1.03235 1.02491 1.21286 0.94147 0.83290 1.02434 1.46124 1.07374 1.08811 1.76872 1.20852 0.81896 0.92082 0.75515 1.90747 1.55189 1.46622 1.48311 1.21713 0.98483 0.93423 1.04404 1.21069 0.91372 0.95112 1.05109 1.21669 0.93247 0.98958 1.03966 1.20559 0.89905 0.83533 0.76599 1.90671 1.70389 1.31056 1.51091 1.48094 1.07839 1.05537 1.71716 1.22470 0.78333 1.01605 1.01255 1.21188 0.98854 0.84549 0.92215 1.44012 0.98978 1.02568 1.85858 1.19164 0.99276 0.88861 1.31429 0.91519 1.25098 0.99959 0.98002 0.96515 1.70025 1.19681 1.35070 1.29628 0.86280 0.80225 0.81891 0.78249 1.21354 1.21488 1.20423 1.21372 0.86921 0.97566 0.93846 1.22459 0.95111 0.84832 1.01181 0.90833 0.91958 0.91986 0.91588 0.91555 0.76612 0.88714 0.88808 0.90536 0.90409 0.88999 0.89237 0.92332 0.90173 0.88327 0.95888 0.93432 0.95903 0.91544 0.91682 0.90898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.64 10.03 37.16 0.37 -0.27 16 2 C 0.11 0.78 6.39 -4.04 -0.03 0.75 16 3 N -0.74 -5.31 5.56 -60.29 -0.33 -5.64 16 4 C 0.51 5.43 7.83 -10.99 -0.09 5.35 16 5 O -0.53 -8.34 15.98 5.56 0.09 -8.25 16 6 C -0.14 -1.16 5.70 -27.88 -0.16 -1.32 16 7 C -0.09 -1.09 3.79 -26.73 -0.10 -1.20 16 8 C -0.14 -1.66 4.04 -27.89 -0.11 -1.77 16 9 C 0.51 8.88 7.70 -10.98 -0.08 8.79 16 10 O -0.55 -11.83 15.39 5.56 0.09 -11.74 16 11 N -0.60 -10.92 2.95 -172.19 -0.51 -11.43 16 12 C 0.09 1.79 6.59 -3.59 -0.02 1.77 16 13 C 0.16 3.82 5.51 -3.59 -0.02 3.80 16 14 N -0.59 -14.40 2.96 -171.74 -0.51 -14.90 16 15 C -0.26 -6.84 9.57 -15.06 -0.14 -6.98 16 16 H 0.07 1.71 7.89 -52.49 -0.41 1.30 16 17 C 0.00 0.09 4.91 -17.43 -0.09 0.00 16 18 N -0.90 -25.85 11.20 55.49 0.62 -25.23 16 19 Si 0.90 21.22 29.59 -169.99 -5.03 16.19 16 20 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 23 C 0.13 2.53 6.70 -3.35 -0.02 2.51 16 24 C 0.09 1.40 6.52 -3.35 -0.02 1.38 16 25 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 26 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 27 H 0.06 0.21 8.14 -51.93 -0.42 -0.22 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.40 1.60 8.47 -40.82 -0.35 1.26 16 31 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.08 1.11 8.06 -51.93 -0.42 0.69 16 34 H 0.08 1.16 8.06 -51.93 -0.42 0.74 16 35 H 0.09 0.95 7.72 -51.93 -0.40 0.55 16 36 H 0.09 0.85 7.91 -51.93 -0.41 0.44 16 37 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.08 1.68 7.00 -51.93 -0.36 1.32 16 39 H 0.10 2.62 6.00 -51.93 -0.31 2.31 16 40 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 42 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 43 H 0.07 1.21 7.93 -51.93 -0.41 0.79 16 44 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.07 0.86 5.91 -51.93 -0.31 0.55 16 LS Contribution 363.05 15.07 5.47 5.47 Total: -1.00 -35.12 363.05 -8.22 -43.33 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -7.59 Total: -0.62 kcal Atomic # 6 Polarization: 13.34 SS G_CDS: -0.51 Total: 12.82 kcal Atomic # 7 Polarization: -56.47 SS G_CDS: -0.73 Total: -57.20 kcal Atomic # 8 Polarization: -20.17 SS G_CDS: 0.17 Total: -20.00 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.19 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -35.12 -8.22 -43.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330841541.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.928 kcal (2) G-P(sol) polarization free energy of solvation -35.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds