Wall clock time and date at job start Tue Mar 31 2020 03:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46507 * 109.47165 * 2 1 4 4 C 1.34773 * 119.99994 * 180.02562 * 3 2 1 5 5 O 1.21282 * 119.99996 * 359.97438 * 4 3 2 6 6 C 1.50700 * 120.00056 * 179.97438 * 4 3 2 7 7 C 1.52997 * 109.47227 * 179.97438 * 6 4 3 8 8 C 1.52996 * 109.47297 * 179.97438 * 7 6 4 9 9 C 1.50696 * 109.47218 * 179.97438 * 8 7 6 10 10 O 1.21282 * 120.00323 * 359.97438 * 9 8 7 11 11 N 1.34783 * 120.00050 * 179.97438 * 9 8 7 12 12 C 1.46967 * 120.59522 * 180.02562 * 11 9 8 13 13 C 1.53374 * 108.63231 * 235.25231 * 12 11 9 14 14 N 1.46972 * 108.63217 * 310.57203 * 13 12 11 15 15 C 1.36935 * 120.59045 * 235.20705 * 14 13 12 16 16 H 1.08002 * 119.99725 * 151.84492 * 15 14 13 17 17 C 1.38804 * 120.00405 * 331.57419 * 15 14 13 18 18 N 1.31622 * 119.99787 * 342.82520 * 17 15 14 19 19 Si 1.86800 * 120.00346 * 162.82771 * 17 15 14 20 20 H 1.48493 * 109.47374 * 89.99790 * 19 17 15 21 21 H 1.48496 * 109.47349 * 210.00137 * 19 17 15 22 22 H 1.48504 * 109.47003 * 329.99893 * 19 17 15 23 23 C 1.46962 * 118.81330 * 55.48066 * 14 13 12 24 24 C 1.46958 * 120.59366 * 0.02562 * 11 9 8 25 25 H 1.08993 * 109.47347 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47039 * 300.00459 * 1 2 3 27 27 H 1.09003 * 109.47358 * 59.99655 * 1 2 3 28 28 H 1.09000 * 109.47150 * 240.00062 * 2 1 3 29 29 H 1.09002 * 109.46936 * 119.99494 * 2 1 3 30 30 H 0.97003 * 119.99811 * 359.97438 * 3 2 1 31 31 H 1.09000 * 109.46957 * 59.99729 * 6 4 3 32 32 H 1.08994 * 109.47038 * 299.99626 * 6 4 3 33 33 H 1.09003 * 109.47039 * 59.99601 * 7 6 4 34 34 H 1.09003 * 109.47358 * 300.00405 * 7 6 4 35 35 H 1.09000 * 109.46880 * 60.00007 * 8 7 6 36 36 H 1.09000 * 109.47474 * 300.00011 * 8 7 6 37 37 H 1.08996 * 109.60899 * 115.50126 * 12 11 9 38 38 H 1.09006 * 109.74993 * 355.07456 * 12 11 9 39 39 H 1.09002 * 109.60640 * 190.83592 * 13 12 11 40 40 H 1.08999 * 109.75615 * 70.39807 * 13 12 11 41 41 H 0.96999 * 119.99847 * 179.97438 * 18 17 15 42 42 H 1.08998 * 109.60973 * 64.26416 * 23 14 13 43 43 H 1.08995 * 109.61395 * 184.77560 * 23 14 13 44 44 H 1.09002 * 109.60988 * 244.49705 * 24 11 9 45 45 H 1.09006 * 109.61277 * 4.83592 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 3.3434 1.6275 -0.0005 5 8 4.1315 0.7057 -0.0005 6 6 3.8457 3.0483 -0.0011 7 6 5.3757 3.0483 -0.0010 8 6 5.8857 4.4908 -0.0022 9 6 7.3927 4.4908 -0.0015 10 8 7.9992 3.4405 0.0004 11 7 8.0666 5.6580 -0.0029 12 6 9.5362 5.6732 -0.0027 13 6 10.0175 6.5081 1.1905 14 7 9.2959 7.7885 1.1892 15 6 9.9806 8.9743 1.1887 16 1 9.5367 9.8540 0.7466 17 6 11.2429 9.0472 1.7615 18 7 11.6454 8.1060 2.5889 19 14 12.3703 10.4810 1.3582 20 1 12.1387 11.5810 2.3284 21 1 13.7849 10.0371 1.4416 22 1 12.0835 10.9648 -0.0162 23 6 7.8263 7.7733 1.1947 24 6 7.3451 6.9383 -0.0045 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8901 30 1 1.3880 2.1186 -0.0004 31 1 3.4827 3.5624 0.8888 32 1 3.4822 3.5619 -0.8911 33 1 5.7391 2.5340 -0.8907 34 1 5.7390 2.5348 0.8892 35 1 5.5223 5.0054 0.8873 36 1 5.5225 5.0039 -0.8927 37 1 9.8975 6.1179 -0.9299 38 1 9.9151 4.6551 0.0867 39 1 11.0882 6.6916 1.1004 40 1 9.8145 5.9748 2.1191 41 1 12.5277 8.1568 2.9889 42 1 7.4686 7.3265 2.1223 43 1 7.4496 8.7923 1.1075 44 1 7.5507 7.4728 -0.9319 45 1 6.2741 6.7548 0.0821 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330841541.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:46:49 Heat of formation + Delta-G solvation = -85.906124 kcal Electronic energy + Delta-G solvation = -23917.400625 eV Core-core repulsion = 20355.044716 eV Total energy + Delta-G solvation = -3562.355909 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.11952 -40.62265 -38.46781 -36.35394 -35.61514 -35.23885 -33.04529 -32.22918 -31.56755 -29.46759 -28.33758 -25.57011 -24.75409 -24.01525 -22.98317 -21.88522 -21.26176 -20.01381 -18.77091 -17.99587 -17.67386 -17.16822 -16.90563 -16.71239 -16.57319 -16.43774 -15.58697 -15.45823 -15.24180 -15.00557 -14.86145 -14.58399 -14.32262 -13.83597 -13.55165 -13.36076 -13.19596 -12.80056 -12.78176 -12.67704 -12.64402 -12.46330 -12.37843 -12.33869 -12.22940 -11.98759 -11.83254 -11.68853 -11.65923 -10.94351 -10.68728 -10.59571 -10.07392 -9.78047 -8.64805 -7.87883 -5.36729 1.47582 1.50292 1.59342 1.68842 1.71865 2.06759 2.34789 2.51995 3.27166 3.60165 3.62486 3.80405 4.09444 4.10553 4.14908 4.22438 4.27862 4.29567 4.42445 4.52716 4.57098 4.59616 4.63379 4.68898 4.72450 4.78640 4.84664 4.96180 5.01202 5.06426 5.08660 5.20208 5.27717 5.28553 5.40189 5.47467 5.53947 5.62163 5.70636 6.35921 6.59902 6.61890 7.09602 7.26883 7.33645 7.80297 8.33636 9.17325 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.047343 B = 0.002344 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 591.285840 B =11944.456453 C =12226.465026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.107 3.893 3 N -0.720 5.720 4 C 0.501 3.499 5 O -0.597 6.597 6 C -0.127 4.127 7 C -0.085 4.085 8 C -0.125 4.125 9 C 0.497 3.503 10 O -0.602 6.602 11 N -0.605 5.605 12 C 0.101 3.899 13 C 0.171 3.829 14 N -0.610 5.610 15 C -0.260 4.260 16 H 0.078 0.922 17 C -0.055 4.055 18 N -0.939 5.939 19 Si 0.970 3.030 20 H -0.284 1.284 21 H -0.298 1.298 22 H -0.266 1.266 23 C 0.122 3.878 24 C 0.098 3.902 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.051 0.949 29 H 0.049 0.951 30 H 0.419 0.581 31 H 0.128 0.872 32 H 0.133 0.867 33 H 0.045 0.955 34 H 0.039 0.961 35 H 0.123 0.877 36 H 0.133 0.867 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.066 0.934 40 H -0.011 1.011 41 H 0.249 0.751 42 H 0.017 0.983 43 H 0.083 0.917 44 H 0.075 0.925 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.085 -6.512 -7.551 27.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.017 4.017 3 N -0.374 5.374 4 C 0.289 3.711 5 O -0.478 6.478 6 C -0.167 4.167 7 C -0.124 4.124 8 C -0.164 4.164 9 C 0.288 3.712 10 O -0.484 6.484 11 N -0.337 5.337 12 C -0.024 4.024 13 C 0.044 3.956 14 N -0.333 5.333 15 C -0.390 4.390 16 H 0.096 0.904 17 C -0.250 4.250 18 N -0.585 5.585 19 Si 0.798 3.202 20 H -0.211 1.211 21 H -0.225 1.225 22 H -0.191 1.191 23 C -0.003 4.003 24 C -0.025 4.025 25 H 0.098 0.902 26 H 0.090 0.910 27 H 0.092 0.908 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.257 0.743 31 H 0.146 0.854 32 H 0.151 0.849 33 H 0.064 0.936 34 H 0.058 0.942 35 H 0.141 0.859 36 H 0.151 0.849 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.007 0.993 41 H 0.058 0.942 42 H 0.035 0.965 43 H 0.101 0.899 44 H 0.093 0.907 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -25.112 -7.691 -7.473 27.305 hybrid contribution 1.338 0.530 0.381 1.488 sum -23.774 -7.160 -7.092 25.822 Atomic orbital electron populations 1.21939 0.91615 1.04069 1.03503 1.21342 0.96398 0.83012 1.00949 1.46014 1.06727 1.09652 1.74969 1.21427 0.82448 0.92654 0.74560 1.90732 1.56929 1.48602 1.51496 1.21685 0.94973 0.92198 1.07812 1.20939 0.94596 0.94899 1.01920 1.21734 0.88204 0.99147 1.07315 1.21691 0.92380 0.82294 0.74860 1.90659 1.71943 1.32836 1.52963 1.48222 1.06605 1.07101 1.71781 1.22025 0.80875 0.99957 0.99547 1.20842 0.97403 0.85177 0.92189 1.44277 1.01287 1.01727 1.86045 1.19579 0.99534 0.89760 1.30125 0.90424 1.25894 1.01644 1.00583 0.96875 1.70194 1.19655 1.37293 1.31358 0.85247 0.77659 0.78901 0.78437 1.21064 1.22474 1.19094 1.21641 0.83811 0.99487 0.95399 1.22544 0.97625 0.82820 0.99513 0.90189 0.90956 0.90824 0.93093 0.93263 0.74298 0.85370 0.84908 0.93566 0.94188 0.85899 0.84941 0.91818 0.91476 0.91549 0.99265 0.94160 0.96502 0.89894 0.90708 0.85355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 10.03 71.98 0.72 -0.11 16 2 C 0.11 1.40 6.39 86.38 0.55 1.95 16 3 N -0.72 -8.76 5.56 -463.05 -2.57 -11.33 16 4 C 0.50 9.99 7.83 87.66 0.69 10.68 16 5 O -0.60 -19.35 15.98 -3.03 -0.05 -19.40 16 6 C -0.13 -1.61 5.70 29.85 0.17 -1.44 16 7 C -0.08 -1.97 3.79 30.59 0.12 -1.85 16 8 C -0.12 -2.46 4.04 29.85 0.12 -2.34 16 9 C 0.50 16.70 7.70 87.65 0.67 17.37 16 10 O -0.60 -26.37 15.39 -3.04 -0.05 -26.41 16 11 N -0.61 -20.99 2.95 -817.06 -2.41 -23.39 16 12 C 0.10 4.23 6.59 86.42 0.57 4.80 16 13 C 0.17 8.55 5.51 86.41 0.48 9.02 16 14 N -0.61 -29.54 2.96 -697.26 -2.06 -31.60 16 15 C -0.26 -13.68 9.57 84.03 0.80 -12.87 16 16 H 0.08 3.85 7.89 -2.91 -0.02 3.82 16 17 C -0.05 -3.01 4.91 84.86 0.42 -2.60 16 18 N -0.94 -55.85 11.20 21.65 0.24 -55.61 16 19 Si 0.97 44.02 29.59 68.60 2.03 46.05 16 20 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 21 H -0.30 -13.84 7.11 99.48 0.71 -13.14 16 22 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 23 C 0.12 4.45 6.70 86.58 0.58 5.03 16 24 C 0.10 2.68 6.52 86.58 0.56 3.24 16 25 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 26 H 0.07 0.28 8.14 -2.39 -0.02 0.26 16 27 H 0.07 0.26 8.14 -2.39 -0.02 0.24 16 28 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.42 1.74 8.47 -92.71 -0.79 0.96 16 31 H 0.13 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.13 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.05 1.34 8.06 -2.39 -0.02 1.32 16 34 H 0.04 1.21 8.06 -2.39 -0.02 1.19 16 35 H 0.12 1.78 7.72 -2.39 -0.02 1.76 16 36 H 0.13 1.59 7.91 -2.39 -0.02 1.57 16 37 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 38 H 0.07 2.96 7.00 -2.38 -0.02 2.94 16 39 H 0.07 3.73 6.00 -2.39 -0.01 3.72 16 40 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 41 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 42 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.08 2.73 7.93 -2.39 -0.02 2.71 16 44 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.13 2.12 5.91 -2.38 -0.01 2.10 16 Total: -1.00 -84.12 363.05 1.77 -82.34 By element: Atomic # 1 Polarization: 8.30 SS G_CDS: 0.19 Total: 8.49 kcal Atomic # 6 Polarization: 24.42 SS G_CDS: 6.45 Total: 30.87 kcal Atomic # 7 Polarization: -115.13 SS G_CDS: -6.80 Total: -121.94 kcal Atomic # 8 Polarization: -45.72 SS G_CDS: -0.10 Total: -45.82 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.03 Total: 46.05 kcal Total: -84.12 1.77 -82.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330841541.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.562 kcal (2) G-P(sol) polarization free energy of solvation -84.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds