Wall clock time and date at job start Tue Mar 31 2020 03:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.46957 * 2 1 4 4 N 1.46490 * 109.47245 * 120.00047 * 2 1 3 5 5 C 1.34778 * 120.00470 * 275.00015 * 4 2 1 6 6 O 1.21583 * 119.99798 * 354.99852 * 5 4 2 7 7 N 1.34773 * 120.00012 * 175.27892 * 5 4 2 8 8 C 1.46928 * 120.63403 * 4.45350 * 7 5 4 9 9 C 1.52756 * 109.00712 * 233.58584 * 8 7 5 10 10 C 1.53042 * 109.38553 * 305.58482 * 9 8 7 11 11 C 1.50698 * 109.44810 * 181.25383 * 10 9 8 12 12 H 1.07996 * 120.00185 * 239.93751 * 11 10 9 13 13 C 1.37878 * 120.00201 * 59.94431 * 11 10 9 14 14 N 1.31522 * 119.99827 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00301 * 179.97438 * 13 11 10 16 16 H 1.48493 * 109.47269 * 59.99474 * 15 13 11 17 17 H 1.48496 * 109.47266 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.46951 * 299.99598 * 15 13 11 19 19 C 1.53042 * 109.53669 * 61.24359 * 10 9 8 20 20 C 1.46932 * 120.62792 * 184.73498 * 7 5 4 21 21 C 1.50695 * 109.46831 * 240.00580 * 2 1 3 22 22 O 1.21282 * 119.99872 * 263.80472 * 21 2 1 23 23 N 1.34783 * 120.00377 * 83.80951 * 21 2 1 24 24 C 1.46501 * 120.00085 * 184.37047 * 23 21 2 25 25 C 1.46500 * 119.99758 * 4.36605 * 23 21 2 26 26 H 1.09000 * 109.47469 * 65.53983 * 1 2 3 27 27 H 1.08994 * 109.46775 * 185.54311 * 1 2 3 28 28 H 1.09006 * 109.46992 * 305.53730 * 1 2 3 29 29 H 0.97006 * 119.99970 * 95.00382 * 4 2 1 30 30 H 1.08994 * 109.58377 * 353.42321 * 8 7 5 31 31 H 1.09001 * 109.58367 * 113.84559 * 8 7 5 32 32 H 1.09004 * 109.56587 * 185.55134 * 9 8 7 33 33 H 1.08997 * 109.38885 * 65.51406 * 9 8 7 34 34 H 1.08993 * 109.46033 * 301.22097 * 10 9 8 35 35 H 0.96996 * 119.99782 * 180.02562 * 14 13 11 36 36 H 1.08998 * 109.49765 * 178.68325 * 19 10 9 37 37 H 1.08999 * 109.52651 * 58.60162 * 19 10 9 38 38 H 1.09002 * 109.58671 * 246.15209 * 20 7 5 39 39 H 1.08992 * 109.58845 * 6.43561 * 20 7 5 40 40 H 1.08998 * 109.47310 * 89.99216 * 24 23 21 41 41 H 1.09003 * 109.46799 * 209.99670 * 24 23 21 42 42 H 1.09005 * 109.46911 * 329.99550 * 24 23 21 43 43 H 1.08999 * 109.47170 * 64.02801 * 25 23 21 44 44 H 1.08996 * 109.46783 * 184.03187 * 25 23 21 45 45 H 1.09006 * 109.47084 * 304.02761 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1471 -0.0183 2.3571 6 8 1.9455 1.1802 2.3912 7 7 2.5049 -0.6736 3.4791 8 6 2.8523 -2.1005 3.4342 9 6 2.0022 -2.8520 4.4570 10 6 2.1744 -2.2058 5.8336 11 6 1.3604 -2.9649 6.8496 12 1 0.5807 -2.4615 7.4019 13 6 1.6110 -4.3020 7.0741 14 7 2.5603 -4.9151 6.4012 15 14 0.6025 -5.2427 8.3339 16 1 -0.8309 -5.2063 7.9476 17 1 1.0651 -6.6528 8.3854 18 1 0.7710 -4.6169 9.6701 19 6 1.6969 -0.7528 5.7803 20 6 2.5490 0.0239 4.7716 21 6 2.0323 -0.7103 -1.2305 22 8 2.3413 -1.8816 -1.1709 23 7 2.1383 -0.0439 -2.3973 24 6 2.5346 -0.7565 -3.6144 25 6 1.8569 1.3929 -2.4484 26 1 -0.3634 0.4255 -0.9354 27 1 -0.3633 -1.0228 0.0993 28 1 -0.3633 0.5974 0.8363 29 1 2.2491 -1.6318 1.1525 30 1 2.6542 -2.4936 2.4371 31 1 3.9075 -2.2275 3.6764 32 1 2.3205 -3.8935 4.5016 33 1 0.9541 -2.8043 4.1613 34 1 3.2263 -2.2322 6.1180 35 1 2.7363 -5.8558 6.5588 36 1 1.7980 -0.3002 6.7667 37 1 0.6517 -0.7239 5.4722 38 1 3.5789 0.0736 5.1250 39 1 2.1532 1.0328 4.6560 40 1 1.6460 -1.1338 -4.1203 41 1 3.0682 -0.0749 -4.2769 42 1 3.1848 -1.5909 -3.3514 43 1 2.5837 1.9274 -1.8367 44 1 1.9245 1.7399 -3.4794 45 1 0.8531 1.5804 -2.0669 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336368790.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:17 Heat of formation + Delta-G solvation = -58.947395 kcal Electronic energy + Delta-G solvation = -25087.753746 eV Core-core repulsion = 21526.566856 eV Total energy + Delta-G solvation = -3561.186890 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.63092 -39.54809 -36.98703 -35.89442 -34.89265 -33.50004 -31.64986 -30.31001 -29.79952 -28.31493 -26.69180 -26.11977 -23.98421 -22.73126 -22.18877 -20.20934 -19.69589 -18.95512 -17.85161 -16.95298 -16.57873 -16.13369 -15.98137 -15.57986 -15.03816 -14.58342 -14.35706 -14.07187 -13.68513 -13.41707 -13.13251 -13.08343 -12.99179 -12.79974 -12.63830 -12.54753 -12.36344 -12.31380 -12.18389 -11.68719 -11.48973 -11.27930 -10.90583 -10.64623 -10.34837 -10.13283 -10.01720 -9.76191 -9.51899 -9.15233 -9.04307 -9.00499 -8.89722 -8.34623 -7.88517 -6.00185 -4.06436 2.28348 2.52822 3.11527 3.31706 3.36549 3.39320 3.55116 4.15870 4.24993 4.43180 4.70096 4.90266 4.97811 4.98987 5.02531 5.23263 5.28993 5.30407 5.45327 5.50110 5.64845 5.66942 5.81645 5.97899 6.05165 6.08043 6.13635 6.19729 6.35236 6.50083 6.56333 6.71045 6.88394 6.96855 7.02410 7.18153 7.26418 7.48658 7.70086 7.82570 7.95696 8.06852 8.31996 8.43348 8.92631 8.96811 9.58470 11.05209 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.025115 B = 0.003369 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.611361 B = 8308.282365 C = 8872.923280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.147 3.853 3 H 0.109 0.891 4 N -0.738 5.738 5 C 0.711 3.289 6 O -0.607 6.607 7 N -0.615 5.615 8 C 0.108 3.892 9 C -0.124 4.124 10 C 0.050 3.950 11 C -0.512 4.512 12 H 0.054 0.946 13 C 0.061 3.939 14 N -0.891 5.891 15 Si 0.891 3.109 16 H -0.278 1.278 17 H -0.288 1.288 18 H -0.278 1.278 19 C -0.124 4.124 20 C 0.130 3.870 21 C 0.513 3.487 22 O -0.531 6.531 23 N -0.621 5.621 24 C 0.084 3.916 25 C 0.073 3.927 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.078 0.922 29 H 0.407 0.593 30 H 0.059 0.941 31 H 0.063 0.937 32 H 0.104 0.896 33 H 0.038 0.962 34 H 0.027 0.973 35 H 0.261 0.739 36 H 0.060 0.940 37 H 0.051 0.949 38 H 0.057 0.943 39 H 0.079 0.921 40 H 0.055 0.945 41 H 0.070 0.930 42 H 0.078 0.922 43 H 0.065 0.935 44 H 0.080 0.920 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.599 10.531 -18.485 21.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.037 3.963 3 H 0.127 0.873 4 N -0.399 5.399 5 C 0.412 3.588 6 O -0.488 6.488 7 N -0.351 5.351 8 C -0.014 4.014 9 C -0.162 4.162 10 C 0.031 3.969 11 C -0.550 4.550 12 H 0.072 0.928 13 C -0.140 4.140 14 N -0.530 5.530 15 Si 0.719 3.281 16 H -0.204 1.204 17 H -0.213 1.213 18 H -0.203 1.203 19 C -0.162 4.162 20 C 0.008 3.992 21 C 0.300 3.700 22 O -0.406 6.406 23 N -0.356 5.356 24 C -0.058 4.058 25 C -0.070 4.070 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.097 0.903 29 H 0.246 0.754 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.122 0.878 33 H 0.057 0.943 34 H 0.046 0.954 35 H 0.071 0.929 36 H 0.079 0.921 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.097 0.903 40 H 0.074 0.926 41 H 0.089 0.911 42 H 0.097 0.903 43 H 0.084 0.916 44 H 0.099 0.901 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.480 10.567 -18.432 21.251 hybrid contribution -0.450 -1.074 0.516 1.274 sum -0.930 9.493 -17.916 20.297 Atomic orbital electron populations 1.22133 0.92902 1.03621 1.02990 1.20511 0.95520 0.97596 0.82643 0.87328 1.45080 1.72312 1.14619 1.07849 1.15728 0.77927 0.84799 0.80318 1.90829 1.59927 1.12764 1.85240 1.47402 1.70081 1.11184 1.06432 1.21845 1.00187 0.79452 0.99919 1.21941 0.97037 1.02397 0.94848 1.18613 0.96859 0.88909 0.92491 1.21172 1.18195 0.94717 1.20948 0.92768 1.24964 0.95197 0.97714 0.96105 1.69830 1.31154 1.10893 1.41173 0.86676 0.80552 0.78840 0.82029 1.20372 1.21342 1.20328 1.22028 0.98686 0.98786 0.96731 1.21585 1.00067 0.96065 0.81518 1.20811 0.77342 0.87234 0.84637 1.90707 1.48759 1.16379 1.84777 1.47685 1.69116 1.09931 1.08849 1.21697 1.00539 0.97981 0.85624 1.21947 1.01811 0.79753 1.03468 0.91527 0.91520 0.90345 0.75356 0.92265 0.91916 0.87786 0.94281 0.95448 0.92933 0.92107 0.92991 0.92428 0.90289 0.92621 0.91104 0.90326 0.91621 0.90138 0.91286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.79 9.35 37.16 0.35 -1.44 16 2 C 0.15 1.90 2.29 -69.09 -0.16 1.74 16 3 H 0.11 1.36 6.25 -51.93 -0.32 1.03 16 4 N -0.74 -11.70 4.96 -59.82 -0.30 -11.99 16 5 C 0.71 13.13 8.26 -86.92 -0.72 12.41 16 6 O -0.61 -12.31 15.41 5.29 0.08 -12.23 16 7 N -0.62 -11.61 2.98 -178.76 -0.53 -12.14 16 8 C 0.11 2.05 6.40 -3.93 -0.03 2.03 16 9 C -0.12 -2.79 5.14 -26.84 -0.14 -2.93 16 10 C 0.05 1.20 2.07 -91.73 -0.19 1.01 16 11 C -0.51 -13.76 8.56 -34.44 -0.29 -14.06 16 12 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 13 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 14 N -0.89 -24.74 11.30 55.43 0.63 -24.11 16 15 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 16 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 17 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 19 C -0.12 -2.57 5.30 -26.61 -0.14 -2.71 16 20 C 0.13 2.44 6.42 -3.71 -0.02 2.42 16 21 C 0.51 6.51 6.89 -10.99 -0.08 6.43 16 22 O -0.53 -8.49 15.54 5.56 0.09 -8.40 16 23 N -0.62 -5.72 3.27 -189.51 -0.62 -6.34 16 24 C 0.08 0.63 10.43 59.85 0.62 1.25 16 25 C 0.07 0.43 9.47 59.85 0.57 1.00 16 26 H 0.07 0.56 6.83 -51.93 -0.35 0.21 16 27 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 28 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 29 H 0.41 6.55 5.23 -40.82 -0.21 6.33 16 30 H 0.06 1.01 5.57 -51.93 -0.29 0.73 16 31 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 32 H 0.10 2.61 6.03 -51.93 -0.31 2.30 16 33 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 36 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 37 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.08 1.46 7.03 -51.93 -0.37 1.10 16 40 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 41 H 0.07 0.34 7.96 -51.93 -0.41 -0.07 16 42 H 0.08 0.73 7.37 -51.93 -0.38 0.34 16 43 H 0.07 0.39 7.74 -51.93 -0.40 -0.01 16 44 H 0.08 0.28 7.83 -51.93 -0.41 -0.13 16 45 H 0.07 0.36 6.48 -51.93 -0.34 0.02 16 LS Contribution 353.84 15.07 5.33 5.33 Total: -1.00 -31.91 353.84 -7.81 -39.73 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -7.15 Total: 5.41 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: -0.32 Total: 8.71 kcal Atomic # 7 Polarization: -53.77 SS G_CDS: -0.82 Total: -54.59 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: 0.17 Total: -20.63 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.91 -7.81 -39.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336368790.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.221 kcal (2) G-P(sol) polarization free energy of solvation -31.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds