Wall clock time and date at job start Tue Mar 31 2020 03:22:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09003 * 109.46957 * 2 1 4 4 N 1.46490 * 109.47245 * 120.00047 * 2 1 3 5 5 C 1.34778 * 120.00470 * 275.00015 * 4 2 1 6 6 O 1.21583 * 119.99798 * 354.99852 * 5 4 2 7 7 N 1.34773 * 120.00012 * 175.27892 * 5 4 2 8 8 C 1.46928 * 120.63403 * 4.45350 * 7 5 4 9 9 C 1.52756 * 109.00712 * 233.58584 * 8 7 5 10 10 C 1.53042 * 109.38553 * 305.58482 * 9 8 7 11 11 C 1.50698 * 109.44810 * 181.25383 * 10 9 8 12 12 H 1.07996 * 120.00185 * 239.93751 * 11 10 9 13 13 C 1.37878 * 120.00201 * 59.94431 * 11 10 9 14 14 N 1.31522 * 119.99827 * 359.97438 * 13 11 10 15 15 Si 1.86799 * 120.00301 * 179.97438 * 13 11 10 16 16 H 1.48493 * 109.47269 * 59.99474 * 15 13 11 17 17 H 1.48496 * 109.47266 * 179.97438 * 15 13 11 18 18 H 1.48502 * 109.46951 * 299.99598 * 15 13 11 19 19 C 1.53042 * 109.53669 * 61.24359 * 10 9 8 20 20 C 1.46932 * 120.62792 * 184.73498 * 7 5 4 21 21 C 1.50695 * 109.46831 * 240.00580 * 2 1 3 22 22 O 1.21282 * 119.99872 * 263.80472 * 21 2 1 23 23 N 1.34783 * 120.00377 * 83.80951 * 21 2 1 24 24 C 1.46501 * 120.00085 * 184.37047 * 23 21 2 25 25 C 1.46500 * 119.99758 * 4.36605 * 23 21 2 26 26 H 1.09000 * 109.47469 * 65.53983 * 1 2 3 27 27 H 1.08994 * 109.46775 * 185.54311 * 1 2 3 28 28 H 1.09006 * 109.46992 * 305.53730 * 1 2 3 29 29 H 0.97006 * 119.99970 * 95.00382 * 4 2 1 30 30 H 1.08994 * 109.58377 * 353.42321 * 8 7 5 31 31 H 1.09001 * 109.58367 * 113.84559 * 8 7 5 32 32 H 1.09004 * 109.56587 * 185.55134 * 9 8 7 33 33 H 1.08997 * 109.38885 * 65.51406 * 9 8 7 34 34 H 1.08993 * 109.46033 * 301.22097 * 10 9 8 35 35 H 0.96996 * 119.99782 * 180.02562 * 14 13 11 36 36 H 1.08998 * 109.49765 * 178.68325 * 19 10 9 37 37 H 1.08999 * 109.52651 * 58.60162 * 19 10 9 38 38 H 1.09002 * 109.58671 * 246.15209 * 20 7 5 39 39 H 1.08992 * 109.58845 * 6.43561 * 20 7 5 40 40 H 1.08998 * 109.47310 * 89.99216 * 24 23 21 41 41 H 1.09003 * 109.46799 * 209.99670 * 24 23 21 42 42 H 1.09005 * 109.46911 * 329.99550 * 24 23 21 43 43 H 1.08999 * 109.47170 * 64.02801 * 25 23 21 44 44 H 1.08996 * 109.46783 * 184.03187 * 25 23 21 45 45 H 1.09006 * 109.47084 * 304.02761 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1471 -0.0183 2.3571 6 8 1.9455 1.1802 2.3912 7 7 2.5049 -0.6736 3.4791 8 6 2.8523 -2.1005 3.4342 9 6 2.0022 -2.8520 4.4570 10 6 2.1744 -2.2058 5.8336 11 6 1.3604 -2.9649 6.8496 12 1 0.5807 -2.4615 7.4019 13 6 1.6110 -4.3020 7.0741 14 7 2.5603 -4.9151 6.4012 15 14 0.6025 -5.2427 8.3339 16 1 -0.8309 -5.2063 7.9476 17 1 1.0651 -6.6528 8.3854 18 1 0.7710 -4.6169 9.6701 19 6 1.6969 -0.7528 5.7803 20 6 2.5490 0.0239 4.7716 21 6 2.0323 -0.7103 -1.2305 22 8 2.3413 -1.8816 -1.1709 23 7 2.1383 -0.0439 -2.3973 24 6 2.5346 -0.7565 -3.6144 25 6 1.8569 1.3929 -2.4484 26 1 -0.3634 0.4255 -0.9354 27 1 -0.3633 -1.0228 0.0993 28 1 -0.3633 0.5974 0.8363 29 1 2.2491 -1.6318 1.1525 30 1 2.6542 -2.4936 2.4371 31 1 3.9075 -2.2275 3.6764 32 1 2.3205 -3.8935 4.5016 33 1 0.9541 -2.8043 4.1613 34 1 3.2263 -2.2322 6.1180 35 1 2.7363 -5.8558 6.5588 36 1 1.7980 -0.3002 6.7667 37 1 0.6517 -0.7239 5.4722 38 1 3.5789 0.0736 5.1250 39 1 2.1532 1.0328 4.6560 40 1 1.6460 -1.1338 -4.1203 41 1 3.0682 -0.0749 -4.2769 42 1 3.1848 -1.5909 -3.3514 43 1 2.5837 1.9274 -1.8367 44 1 1.9245 1.7399 -3.4794 45 1 0.8531 1.5804 -2.0669 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336368790.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:16 Heat of formation + Delta-G solvation = -79.687663 kcal Electronic energy + Delta-G solvation = -25088.653112 eV Core-core repulsion = 21526.566856 eV Total energy + Delta-G solvation = -3562.086256 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.80481 -40.78755 -38.59017 -36.72191 -36.14058 -35.33984 -33.27925 -31.90923 -31.22172 -28.91470 -27.96043 -27.41717 -25.27146 -24.28446 -23.77282 -21.73031 -20.82735 -20.31821 -19.25093 -18.34272 -17.97168 -17.48251 -16.87770 -16.81862 -16.46566 -16.37525 -15.57941 -15.24657 -14.91229 -14.84667 -14.52999 -14.48549 -14.17632 -14.03816 -13.68496 -13.59631 -13.44983 -13.25163 -13.15364 -13.12150 -12.80257 -12.77380 -12.65493 -12.47792 -12.14313 -11.97805 -11.48110 -11.26415 -11.01508 -10.99139 -10.78587 -10.40105 -10.30699 -9.76362 -9.44703 -8.06621 -6.20065 1.29222 1.43316 1.43757 1.51207 1.54498 1.98290 2.15295 2.44961 2.85633 3.19811 3.31580 3.98952 4.02411 4.07482 4.23036 4.27686 4.35844 4.39682 4.45176 4.46125 4.55986 4.60433 4.69512 4.71412 4.77076 4.89514 4.90672 4.93655 4.98720 5.14881 5.21379 5.22073 5.33561 5.42945 5.44199 5.49962 5.65448 5.96919 6.01290 6.13041 6.16723 6.40103 6.86460 6.89818 6.94270 7.47600 7.47659 8.96578 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.025115 B = 0.003369 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.611361 B = 8308.282365 C = 8872.923280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.143 3.857 3 H 0.116 0.884 4 N -0.734 5.734 5 C 0.711 3.289 6 O -0.624 6.624 7 N -0.620 5.620 8 C 0.121 3.879 9 C -0.113 4.113 10 C 0.047 3.953 11 C -0.534 4.534 12 H 0.049 0.951 13 C 0.016 3.984 14 N -0.913 5.913 15 Si 0.950 3.050 16 H -0.275 1.275 17 H -0.284 1.284 18 H -0.273 1.273 19 C -0.113 4.113 20 C 0.136 3.864 21 C 0.509 3.491 22 O -0.573 6.573 23 N -0.613 5.613 24 C 0.080 3.920 25 C 0.064 3.936 26 H 0.099 0.901 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.405 0.595 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.026 0.974 34 H 0.004 0.996 35 H 0.261 0.739 36 H 0.068 0.932 37 H 0.042 0.958 38 H 0.068 0.932 39 H 0.086 0.914 40 H 0.066 0.934 41 H 0.103 0.897 42 H 0.055 0.945 43 H 0.066 0.934 44 H 0.111 0.889 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.077 11.824 -19.978 23.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.035 3.965 3 H 0.134 0.866 4 N -0.394 5.394 5 C 0.412 3.588 6 O -0.506 6.506 7 N -0.356 5.356 8 C -0.002 4.002 9 C -0.152 4.152 10 C 0.028 3.972 11 C -0.572 4.572 12 H 0.067 0.933 13 C -0.183 4.183 14 N -0.552 5.552 15 Si 0.776 3.224 16 H -0.201 1.201 17 H -0.210 1.210 18 H -0.198 1.198 19 C -0.152 4.152 20 C 0.014 3.986 21 C 0.296 3.704 22 O -0.453 6.453 23 N -0.346 5.346 24 C -0.062 4.062 25 C -0.078 4.078 26 H 0.118 0.882 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.244 0.756 30 H 0.096 0.904 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.045 0.955 34 H 0.022 0.978 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.061 0.939 38 H 0.087 0.913 39 H 0.104 0.896 40 H 0.084 0.916 41 H 0.121 0.879 42 H 0.074 0.926 43 H 0.084 0.916 44 H 0.129 0.871 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.969 11.903 -19.974 23.272 hybrid contribution -0.304 -1.424 0.909 1.716 sum -1.273 10.479 -19.066 21.793 Atomic orbital electron populations 1.22077 0.91664 1.02959 1.04244 1.20741 0.96469 0.97558 0.81766 0.86629 1.45125 1.71628 1.14534 1.08068 1.15781 0.77692 0.84632 0.80672 1.90811 1.60755 1.13455 1.85591 1.47393 1.70419 1.10944 1.06823 1.21636 0.99453 0.79354 0.99731 1.21698 0.96814 1.01337 0.95328 1.18585 0.95083 0.90899 0.92600 1.21530 1.18499 0.95411 1.21783 0.93250 1.25665 0.96210 0.98587 0.97830 1.69953 1.32151 1.11008 1.42131 0.85744 0.79143 0.77609 0.79930 1.20058 1.20984 1.19793 1.21871 0.98334 0.96998 0.97953 1.21511 1.00264 0.95852 0.81022 1.20764 0.77351 0.86742 0.85508 1.90689 1.51005 1.18073 1.85506 1.47820 1.67328 1.11256 1.08186 1.21867 1.00984 0.98125 0.85244 1.22240 1.02342 0.77510 1.05690 0.88248 0.92614 0.91560 0.75567 0.90385 0.91591 0.90397 0.95495 0.97766 0.92987 0.91355 0.93909 0.91328 0.89577 0.91587 0.87855 0.92559 0.91584 0.87065 0.90321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.20 9.35 71.98 0.67 -2.52 16 2 C 0.14 3.52 2.29 44.25 0.10 3.62 16 3 H 0.12 2.68 6.25 -2.39 -0.01 2.67 16 4 N -0.73 -22.77 4.96 -461.43 -2.29 -25.06 16 5 C 0.71 25.62 8.26 179.06 1.48 27.10 16 6 O -0.62 -24.54 15.41 -3.98 -0.06 -24.60 16 7 N -0.62 -23.01 2.98 -837.75 -2.50 -25.51 16 8 C 0.12 4.57 6.40 86.22 0.55 5.12 16 9 C -0.11 -5.21 5.14 30.53 0.16 -5.05 16 10 C 0.05 2.29 2.07 -11.51 -0.02 2.27 16 11 C -0.53 -29.12 8.56 25.60 0.22 -28.90 16 12 H 0.05 2.67 7.74 -2.91 -0.02 2.65 16 13 C 0.02 0.87 5.30 84.65 0.45 1.32 16 14 N -0.91 -51.46 11.30 21.45 0.24 -51.22 16 15 Si 0.95 43.41 29.54 68.60 2.03 45.43 16 16 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 17 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 18 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 19 C -0.11 -4.68 5.30 30.67 0.16 -4.52 16 20 C 0.14 5.00 6.42 86.36 0.55 5.55 16 21 C 0.51 12.34 6.89 87.65 0.60 12.95 16 22 O -0.57 -18.29 15.54 -3.04 -0.05 -18.34 16 23 N -0.61 -9.90 3.27 -871.88 -2.85 -12.76 16 24 C 0.08 1.01 10.43 127.77 1.33 2.35 16 25 C 0.06 0.54 9.47 127.77 1.21 1.75 16 26 H 0.10 1.41 6.83 -2.39 -0.02 1.40 16 27 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.07 1.58 8.14 -2.38 -0.02 1.56 16 29 H 0.41 12.91 5.23 -92.70 -0.48 12.43 16 30 H 0.08 2.65 5.57 -2.39 -0.01 2.64 16 31 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 32 H 0.08 4.03 6.03 -2.39 -0.01 4.01 16 33 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 35 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 36 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 37 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 38 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 39 H 0.09 3.07 7.03 -2.39 -0.02 3.06 16 40 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 41 H 0.10 0.64 7.96 -2.39 -0.02 0.62 16 42 H 0.06 1.00 7.37 -2.38 -0.02 0.98 16 43 H 0.07 0.60 7.74 -2.39 -0.02 0.58 16 44 H 0.11 0.29 7.83 -2.39 -0.02 0.27 16 45 H 0.08 0.55 6.48 -2.38 -0.02 0.53 16 Total: -1.00 -69.24 353.84 2.49 -66.74 By element: Atomic # 1 Polarization: 23.77 SS G_CDS: 0.50 Total: 24.28 kcal Atomic # 6 Polarization: 13.55 SS G_CDS: 7.47 Total: 21.02 kcal Atomic # 7 Polarization: -107.15 SS G_CDS: -7.40 Total: -114.54 kcal Atomic # 8 Polarization: -42.83 SS G_CDS: -0.11 Total: -42.93 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Total: -69.24 2.49 -66.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336368790.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.946 kcal (2) G-P(sol) polarization free energy of solvation -69.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds