Wall clock time and date at job start Tue Mar 31 2020 03:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.46676 * 2 1 4 4 C 1.50702 * 109.46987 * 119.99358 * 2 1 3 5 5 O 1.21277 * 119.99792 * 105.08516 * 4 2 1 6 6 N 1.34774 * 119.99933 * 285.07759 * 4 2 1 7 7 C 1.46509 * 119.99737 * 179.97438 * 6 4 2 8 8 C 1.50700 * 109.46757 * 179.97438 * 7 6 4 9 9 O 1.21286 * 120.00162 * 0.02562 * 8 7 6 10 10 N 1.34781 * 119.99735 * 180.02562 * 8 7 6 11 11 C 1.37094 * 120.00173 * 180.02562 * 10 8 7 12 12 H 1.08004 * 119.99515 * 359.97438 * 11 10 8 13 13 C 1.38946 * 120.00008 * 180.02562 * 11 10 8 14 14 N 1.31410 * 120.00333 * 359.97438 * 13 11 10 15 15 Si 1.86806 * 119.99875 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47037 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.46858 * 120.00002 * 15 13 11 18 18 H 1.48492 * 109.47199 * 239.99968 * 15 13 11 19 19 N 1.46888 * 109.47003 * 239.99666 * 2 1 3 20 20 C 1.48003 * 111.00445 * 79.69290 * 19 2 1 21 21 C 1.50446 * 112.83034 * 191.34301 * 20 19 2 22 22 C 1.54303 * 108.49911 * 93.72833 * 21 20 19 23 23 C 1.45882 * 112.18869 * 281.46732 * 22 21 20 24 24 C 1.54306 * 112.18797 * 61.11573 * 23 22 21 25 25 C 1.48006 * 111.00126 * 310.97060 * 19 2 1 26 26 H 1.08998 * 109.47304 * 300.81185 * 1 2 3 27 27 H 1.08993 * 109.47205 * 60.81833 * 1 2 3 28 28 H 1.09003 * 109.47183 * 180.82214 * 1 2 3 29 29 H 0.97000 * 120.00190 * 359.73349 * 6 4 2 30 30 H 1.08990 * 109.47118 * 300.00196 * 7 6 4 31 31 H 1.09005 * 109.46460 * 60.00489 * 7 6 4 32 32 H 0.97005 * 119.99664 * 0.02562 * 10 8 7 33 33 H 0.96999 * 120.00120 * 179.97438 * 14 13 11 34 34 H 1.08999 * 108.80889 * 312.21320 * 20 19 2 35 35 H 1.09005 * 108.80670 * 70.47868 * 20 19 2 36 36 H 1.08999 * 109.63149 * 334.02378 * 21 20 19 37 37 H 1.08999 * 109.63045 * 213.43517 * 21 20 19 38 38 H 1.09003 * 108.94359 * 160.76726 * 22 21 20 39 39 H 1.09006 * 108.94405 * 42.16058 * 22 21 20 40 40 H 1.09009 * 108.93078 * 300.42462 * 23 22 21 41 41 H 1.08994 * 108.94224 * 181.82280 * 23 22 21 42 42 H 1.09001 * 109.63455 * 161.76565 * 24 23 22 43 43 H 1.09007 * 109.63143 * 41.16636 * 24 23 22 44 44 H 1.08997 * 108.80816 * 205.70070 * 25 19 2 45 45 H 1.08997 * 108.81398 * 323.97698 * 25 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2306 5 8 2.4922 -1.8288 1.1398 6 7 1.9707 -0.1024 2.4318 7 6 2.4585 -0.7932 3.6282 8 6 2.2782 0.0970 4.8308 9 8 1.7898 1.1996 4.7014 10 7 2.6596 -0.3322 6.0502 11 6 2.4951 0.4773 7.1443 12 1 2.0602 1.4591 7.0290 13 6 2.8888 0.0350 8.4012 14 7 3.4185 -1.1595 8.5414 15 14 2.6653 1.1383 9.8920 16 1 2.0507 2.4225 9.4696 17 1 1.7798 0.4665 10.8767 18 1 3.9872 1.4028 10.5147 19 7 2.0197 -0.6925 -1.1993 20 6 1.9634 0.1934 -2.3836 21 6 2.1935 -0.5432 -3.6750 22 6 0.8235 -0.9471 -4.2591 23 6 0.2663 -2.1208 -3.5959 24 6 0.0257 -1.8804 -2.0908 25 6 1.3423 -1.9971 -1.3722 26 1 -0.3634 0.5264 0.8826 27 1 -0.3633 0.5010 -0.8972 28 1 -0.3634 -1.0276 0.0147 29 1 1.6066 0.7938 2.5038 30 1 1.8951 -1.7153 3.7705 31 1 3.5159 -1.0285 3.5061 32 1 3.0506 -1.2140 6.1536 33 1 3.6937 -1.4681 9.4189 34 1 0.9835 0.6695 -2.4201 35 1 2.7240 0.9673 -2.2799 36 1 2.7888 -1.4365 -3.4861 37 1 2.7148 0.1057 -4.3788 38 1 0.9414 -1.1633 -5.3209 39 1 0.1304 -0.1136 -4.1444 40 1 0.9572 -2.9556 -3.7147 41 1 -0.6813 -2.3780 -4.0690 42 1 -0.6686 -2.6279 -1.7068 43 1 -0.3863 -0.8824 -1.9406 44 1 1.9953 -2.6595 -1.9404 45 1 1.1688 -2.4360 -0.3897 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343518398.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:28 Heat of formation + Delta-G solvation = -70.600486 kcal Electronic energy + Delta-G solvation = -24558.805985 eV Core-core repulsion = 20997.113779 eV Total energy + Delta-G solvation = -3561.692206 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.49860 -38.95174 -37.98238 -35.07844 -34.41864 -33.65793 -32.44885 -31.39589 -30.58647 -27.64230 -26.91686 -25.14133 -24.67850 -23.07447 -20.79406 -20.17111 -19.75513 -19.33862 -18.08343 -17.23597 -16.53925 -15.91801 -15.68673 -15.25742 -15.15337 -14.80944 -14.45452 -14.21736 -14.02605 -13.87246 -13.69543 -13.34211 -13.20309 -12.90900 -12.47569 -12.29903 -12.18178 -12.11046 -11.87757 -11.73884 -11.63300 -11.31941 -11.13973 -10.87368 -10.80025 -10.64143 -10.41206 -10.38129 -10.32365 -9.64925 -9.43977 -8.73201 -8.63062 -8.21847 -8.10226 -6.51640 -3.93632 2.87520 3.10139 3.18710 3.23150 3.29986 3.74308 3.89894 4.11974 4.41401 4.50979 4.70247 4.85317 4.89060 4.90003 4.93394 5.04331 5.05895 5.17050 5.22544 5.25819 5.41227 5.45139 5.54897 5.62844 5.71530 5.76288 5.79588 5.88652 5.88837 5.93095 5.95306 5.98525 6.04474 6.08205 6.12153 6.28240 6.73416 6.93783 7.10578 7.46029 7.87841 7.92370 8.44632 8.53681 9.04619 9.39485 9.87284 10.65350 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.046526 B = 0.002527 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.666030 B =11076.903931 C =11222.257966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.069 3.931 3 H 0.102 0.898 4 C 0.519 3.481 5 O -0.533 6.533 6 N -0.709 5.709 7 C 0.110 3.890 8 C 0.429 3.571 9 O -0.598 6.598 10 N -0.550 5.550 11 C -0.304 4.304 12 H 0.106 0.894 13 C 0.025 3.975 14 N -0.895 5.895 15 Si 0.932 3.068 16 H -0.267 1.267 17 H -0.280 1.280 18 H -0.280 1.280 19 N -0.528 5.528 20 C 0.063 3.937 21 C -0.121 4.121 22 C -0.119 4.119 23 C -0.119 4.119 24 C -0.162 4.162 25 C 0.060 3.940 26 H 0.068 0.932 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.409 0.591 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.396 0.604 33 H 0.274 0.726 34 H 0.035 0.965 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.061 0.939 41 H 0.055 0.945 42 H 0.066 0.934 43 H 0.075 0.925 44 H 0.071 0.929 45 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.228 -0.458 -22.117 22.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.043 4.043 3 H 0.120 0.880 4 C 0.304 3.696 5 O -0.409 6.409 6 N -0.363 5.363 7 C -0.017 4.017 8 C 0.214 3.786 9 O -0.484 6.484 10 N -0.185 5.185 11 C -0.434 4.434 12 H 0.124 0.876 13 C -0.178 4.178 14 N -0.535 5.535 15 Si 0.759 3.241 16 H -0.191 1.191 17 H -0.206 1.206 18 H -0.206 1.206 19 N -0.252 5.252 20 C -0.064 4.064 21 C -0.158 4.158 22 C -0.157 4.157 23 C -0.156 4.156 24 C -0.200 4.200 25 C -0.067 4.067 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.247 0.753 30 H 0.100 0.900 31 H 0.101 0.899 32 H 0.230 0.770 33 H 0.084 0.916 34 H 0.053 0.947 35 H 0.089 0.911 36 H 0.095 0.905 37 H 0.089 0.911 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.085 0.915 43 H 0.093 0.907 44 H 0.089 0.911 45 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.664 -0.739 -22.006 22.507 hybrid contribution -0.814 0.531 0.839 1.284 sum -5.477 -0.208 -21.168 21.866 Atomic orbital electron populations 1.22619 0.95192 1.03416 1.02870 1.21496 0.94298 0.98581 0.89911 0.88012 1.20330 0.78715 0.86603 0.83965 1.90646 1.45197 1.19225 1.85881 1.45704 1.63719 1.20830 1.06075 1.20924 1.00647 0.95549 0.84603 1.19767 0.85731 0.88558 0.84504 1.90490 1.50490 1.22282 1.85180 1.41813 1.53363 1.17840 1.05455 1.19774 1.39002 1.00020 0.84557 0.87641 1.25329 0.96486 0.96647 0.99315 1.69622 1.40962 1.17644 1.25261 0.85759 0.78046 0.79856 0.80441 1.19141 1.20623 1.20604 1.61598 1.57788 1.04097 1.01742 1.21801 1.00239 0.95046 0.89321 1.21418 0.97236 1.01452 0.95733 1.20598 0.96832 0.98598 0.99656 1.20574 1.00711 0.98558 0.95804 1.22367 0.99274 1.02859 0.95545 1.21931 0.92446 0.90439 1.01869 0.91254 0.91435 0.91102 0.75312 0.89986 0.89887 0.77037 0.91639 0.94672 0.91106 0.90465 0.91131 0.92297 0.92434 0.92051 0.92613 0.91515 0.90679 0.91052 0.89590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.83 7.48 37.16 0.28 -1.56 16 2 C 0.07 0.83 2.66 -68.87 -0.18 0.64 16 3 H 0.10 1.09 7.94 -51.93 -0.41 0.67 16 4 C 0.52 8.10 6.83 -10.99 -0.08 8.03 16 5 O -0.53 -9.87 14.41 5.56 0.08 -9.79 16 6 N -0.71 -11.66 5.53 -61.47 -0.34 -12.00 16 7 C 0.11 2.04 6.15 -5.19 -0.03 2.01 16 8 C 0.43 9.80 7.85 -10.98 -0.09 9.71 16 9 O -0.60 -15.19 15.24 5.55 0.08 -15.11 16 10 N -0.55 -13.64 5.29 -10.96 -0.06 -13.70 16 11 C -0.30 -8.26 9.68 -14.94 -0.14 -8.40 16 12 H 0.11 2.99 7.16 -52.48 -0.38 2.61 16 13 C 0.02 0.65 5.50 -17.47 -0.10 0.56 16 14 N -0.89 -23.93 13.05 55.50 0.72 -23.20 16 15 Si 0.93 20.52 29.55 -169.99 -5.02 15.49 16 16 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 17 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 18 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 19 N -0.53 -6.16 4.42 -229.30 -1.01 -7.17 16 20 C 0.06 0.57 4.82 -4.49 -0.02 0.55 16 21 C -0.12 -0.96 5.63 -27.32 -0.15 -1.11 16 22 C -0.12 -0.86 5.30 -29.42 -0.16 -1.01 16 23 C -0.12 -0.92 5.30 -29.42 -0.16 -1.08 16 24 C -0.16 -1.45 4.23 -27.32 -0.12 -1.56 16 25 C 0.06 0.69 4.12 -4.49 -0.02 0.67 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.07 0.57 5.75 -51.93 -0.30 0.28 16 28 H 0.07 0.75 5.72 -51.93 -0.30 0.46 16 29 H 0.41 6.58 7.44 -40.82 -0.30 6.27 16 30 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 31 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 32 H 0.40 9.46 7.90 -40.82 -0.32 9.14 16 33 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 34 H 0.04 0.30 5.36 -51.93 -0.28 0.02 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.71 7.08 -51.93 -0.37 0.34 16 37 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 39 H 0.06 0.41 7.52 -51.93 -0.39 0.02 16 40 H 0.06 0.49 7.52 -51.92 -0.39 0.10 16 41 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 42 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.07 0.66 4.07 -51.92 -0.21 0.45 16 44 H 0.07 0.83 6.59 -51.93 -0.34 0.49 16 45 H 0.09 1.19 5.49 -51.93 -0.29 0.90 16 LS Contribution 343.33 15.07 5.17 5.17 Total: -1.00 -30.52 343.33 -8.12 -38.65 By element: Atomic # 1 Polarization: 21.00 SS G_CDS: -6.79 Total: 14.21 kcal Atomic # 6 Polarization: 8.40 SS G_CDS: -0.96 Total: 7.44 kcal Atomic # 7 Polarization: -55.38 SS G_CDS: -0.69 Total: -56.07 kcal Atomic # 8 Polarization: -25.06 SS G_CDS: 0.16 Total: -24.90 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.52 -8.12 -38.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343518398.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.952 kcal (2) G-P(sol) polarization free energy of solvation -30.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds