Wall clock time and date at job start Tue Mar 31 2020 03:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08996 * 109.46676 * 2 1 4 4 C 1.50702 * 109.46987 * 119.99358 * 2 1 3 5 5 O 1.21277 * 119.99792 * 105.08516 * 4 2 1 6 6 N 1.34774 * 119.99933 * 285.07759 * 4 2 1 7 7 C 1.46509 * 119.99737 * 179.97438 * 6 4 2 8 8 C 1.50700 * 109.46757 * 179.97438 * 7 6 4 9 9 O 1.21286 * 120.00162 * 0.02562 * 8 7 6 10 10 N 1.34781 * 119.99735 * 180.02562 * 8 7 6 11 11 C 1.37094 * 120.00173 * 180.02562 * 10 8 7 12 12 H 1.08004 * 119.99515 * 359.97438 * 11 10 8 13 13 C 1.38946 * 120.00008 * 180.02562 * 11 10 8 14 14 N 1.31410 * 120.00333 * 359.97438 * 13 11 10 15 15 Si 1.86806 * 119.99875 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47037 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.46858 * 120.00002 * 15 13 11 18 18 H 1.48492 * 109.47199 * 239.99968 * 15 13 11 19 19 N 1.46888 * 109.47003 * 239.99666 * 2 1 3 20 20 C 1.48003 * 111.00445 * 79.69290 * 19 2 1 21 21 C 1.50446 * 112.83034 * 191.34301 * 20 19 2 22 22 C 1.54303 * 108.49911 * 93.72833 * 21 20 19 23 23 C 1.45882 * 112.18869 * 281.46732 * 22 21 20 24 24 C 1.54306 * 112.18797 * 61.11573 * 23 22 21 25 25 C 1.48006 * 111.00126 * 310.97060 * 19 2 1 26 26 H 1.08998 * 109.47304 * 300.81185 * 1 2 3 27 27 H 1.08993 * 109.47205 * 60.81833 * 1 2 3 28 28 H 1.09003 * 109.47183 * 180.82214 * 1 2 3 29 29 H 0.97000 * 120.00190 * 359.73349 * 6 4 2 30 30 H 1.08990 * 109.47118 * 300.00196 * 7 6 4 31 31 H 1.09005 * 109.46460 * 60.00489 * 7 6 4 32 32 H 0.97005 * 119.99664 * 0.02562 * 10 8 7 33 33 H 0.96999 * 120.00120 * 179.97438 * 14 13 11 34 34 H 1.08999 * 108.80889 * 312.21320 * 20 19 2 35 35 H 1.09005 * 108.80670 * 70.47868 * 20 19 2 36 36 H 1.08999 * 109.63149 * 334.02378 * 21 20 19 37 37 H 1.08999 * 109.63045 * 213.43517 * 21 20 19 38 38 H 1.09003 * 108.94359 * 160.76726 * 22 21 20 39 39 H 1.09006 * 108.94405 * 42.16058 * 22 21 20 40 40 H 1.09009 * 108.93078 * 300.42462 * 23 22 21 41 41 H 1.08994 * 108.94224 * 181.82280 * 23 22 21 42 42 H 1.09001 * 109.63455 * 161.76565 * 24 23 22 43 43 H 1.09007 * 109.63143 * 41.16636 * 24 23 22 44 44 H 1.08997 * 108.80816 * 205.70070 * 25 19 2 45 45 H 1.08997 * 108.81398 * 323.97698 * 25 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 1.2306 5 8 2.4922 -1.8288 1.1398 6 7 1.9707 -0.1024 2.4318 7 6 2.4585 -0.7932 3.6282 8 6 2.2782 0.0970 4.8308 9 8 1.7898 1.1996 4.7014 10 7 2.6596 -0.3322 6.0502 11 6 2.4951 0.4773 7.1443 12 1 2.0602 1.4591 7.0290 13 6 2.8888 0.0350 8.4012 14 7 3.4185 -1.1595 8.5414 15 14 2.6653 1.1383 9.8920 16 1 2.0507 2.4225 9.4696 17 1 1.7798 0.4665 10.8767 18 1 3.9872 1.4028 10.5147 19 7 2.0197 -0.6925 -1.1993 20 6 1.9634 0.1934 -2.3836 21 6 2.1935 -0.5432 -3.6750 22 6 0.8235 -0.9471 -4.2591 23 6 0.2663 -2.1208 -3.5959 24 6 0.0257 -1.8804 -2.0908 25 6 1.3423 -1.9971 -1.3722 26 1 -0.3634 0.5264 0.8826 27 1 -0.3633 0.5010 -0.8972 28 1 -0.3634 -1.0276 0.0147 29 1 1.6066 0.7938 2.5038 30 1 1.8951 -1.7153 3.7705 31 1 3.5159 -1.0285 3.5061 32 1 3.0506 -1.2140 6.1536 33 1 3.6937 -1.4681 9.4189 34 1 0.9835 0.6695 -2.4201 35 1 2.7240 0.9673 -2.2799 36 1 2.7888 -1.4365 -3.4861 37 1 2.7148 0.1057 -4.3788 38 1 0.9414 -1.1633 -5.3209 39 1 0.1304 -0.1136 -4.1444 40 1 0.9572 -2.9556 -3.7147 41 1 -0.6813 -2.3780 -4.0690 42 1 -0.6686 -2.6279 -1.7068 43 1 -0.3863 -0.8824 -1.9406 44 1 1.9953 -2.6595 -1.9404 45 1 1.1688 -2.4360 -0.3897 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343518398.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:22:27 Heat of formation + Delta-G solvation = -93.136016 kcal Electronic energy + Delta-G solvation = -24559.783199 eV Core-core repulsion = 20997.113779 eV Total energy + Delta-G solvation = -3562.669420 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.54540 -40.38215 -39.44348 -36.26017 -35.86975 -35.26768 -33.38092 -33.15628 -31.53536 -29.16632 -27.70551 -26.53790 -25.84314 -24.16897 -21.50954 -21.36514 -21.21670 -20.48557 -20.01868 -18.47972 -17.60296 -17.31506 -16.78410 -16.66578 -16.47643 -16.25997 -15.84606 -15.59479 -15.33515 -14.88447 -14.71171 -14.43169 -14.04747 -13.92134 -13.84848 -13.55581 -13.49135 -13.28530 -13.05272 -12.91970 -12.74658 -12.63907 -12.44879 -12.13970 -12.11072 -11.58228 -11.55410 -11.41097 -11.37504 -11.08657 -10.66064 -10.55662 -10.15917 -10.06812 -9.07122 -8.51460 -6.01687 1.34882 1.42705 1.56788 1.64224 1.90820 1.96604 2.30639 2.95820 3.14378 3.15754 3.67585 3.76611 3.88905 4.04131 4.07237 4.18859 4.22438 4.23724 4.35373 4.43110 4.43424 4.51421 4.53570 4.63194 4.76700 4.82175 4.89229 4.94720 5.05608 5.12563 5.16251 5.25973 5.30702 5.32417 5.38451 5.40540 5.45107 5.51984 5.91713 6.06399 6.29104 6.46694 6.60028 7.03223 7.24352 7.44408 7.93959 8.65757 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.046526 B = 0.002527 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.666030 B =11076.903931 C =11222.257966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.075 3.925 3 H 0.119 0.881 4 C 0.518 3.482 5 O -0.564 6.564 6 N -0.708 5.708 7 C 0.123 3.877 8 C 0.434 3.566 9 O -0.623 6.623 10 N -0.561 5.561 11 C -0.335 4.335 12 H 0.087 0.913 13 C -0.012 4.012 14 N -0.917 5.917 15 Si 0.997 3.003 16 H -0.269 1.269 17 H -0.271 1.271 18 H -0.271 1.271 19 N -0.546 5.546 20 C 0.062 3.938 21 C -0.119 4.119 22 C -0.117 4.117 23 C -0.117 4.117 24 C -0.155 4.155 25 C 0.068 3.932 26 H 0.069 0.931 27 H 0.089 0.911 28 H 0.062 0.938 29 H 0.413 0.587 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.398 0.602 33 H 0.280 0.720 34 H 0.048 0.952 35 H 0.074 0.926 36 H 0.061 0.939 37 H 0.085 0.915 38 H 0.070 0.930 39 H 0.064 0.936 40 H 0.055 0.945 41 H 0.066 0.934 42 H 0.066 0.934 43 H 0.081 0.919 44 H 0.062 0.938 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.900 0.388 -23.276 24.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.037 4.037 3 H 0.136 0.864 4 C 0.305 3.695 5 O -0.443 6.443 6 N -0.363 5.363 7 C -0.005 4.005 8 C 0.221 3.779 9 O -0.511 6.511 10 N -0.196 5.196 11 C -0.465 4.465 12 H 0.105 0.895 13 C -0.213 4.213 14 N -0.557 5.557 15 Si 0.821 3.179 16 H -0.194 1.194 17 H -0.196 1.196 18 H -0.197 1.197 19 N -0.271 5.271 20 C -0.064 4.064 21 C -0.156 4.156 22 C -0.154 4.154 23 C -0.154 4.154 24 C -0.194 4.194 25 C -0.059 4.059 26 H 0.088 0.912 27 H 0.108 0.892 28 H 0.081 0.919 29 H 0.251 0.749 30 H 0.109 0.891 31 H 0.108 0.892 32 H 0.232 0.768 33 H 0.089 0.911 34 H 0.066 0.934 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.104 0.896 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.085 0.915 43 H 0.099 0.901 44 H 0.080 0.920 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.337 0.100 -23.191 23.798 hybrid contribution -0.577 0.234 1.137 1.296 sum -5.914 0.334 -22.054 22.836 Atomic orbital electron populations 1.22578 0.93571 1.03256 1.03996 1.21483 0.95422 0.98591 0.88194 0.86370 1.21073 0.77702 0.86263 0.84485 1.90636 1.46577 1.20732 1.86313 1.45731 1.63875 1.20895 1.05814 1.20723 1.01369 0.94867 0.83517 1.20421 0.83930 0.88492 0.85036 1.90466 1.51182 1.23652 1.85775 1.41870 1.54125 1.17859 1.05778 1.19771 1.40673 1.00003 0.86021 0.89537 1.26144 0.95642 0.97958 1.01509 1.69687 1.41092 1.18707 1.26249 0.84805 0.78321 0.77899 0.76918 1.19362 1.19641 1.19657 1.61550 1.58358 1.04582 1.02593 1.21897 1.01056 0.94770 0.88692 1.21417 0.97740 1.00940 0.95548 1.20581 0.96302 0.98431 1.00123 1.20557 1.01197 0.98782 0.94876 1.22288 0.97747 1.03167 0.96201 1.21782 0.93548 0.90276 1.00343 0.91233 0.89198 0.91868 0.74943 0.89066 0.89207 0.76767 0.91084 0.93412 0.90796 0.92070 0.89625 0.91179 0.91729 0.92666 0.91531 0.91531 0.90105 0.91982 0.92448 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.22 7.48 71.98 0.54 -2.68 16 2 C 0.08 1.70 2.66 44.17 0.12 1.81 16 3 H 0.12 2.28 7.94 -2.39 -0.02 2.26 16 4 C 0.52 15.97 6.83 87.66 0.60 16.57 16 5 O -0.56 -21.06 14.41 -3.02 -0.04 -21.10 16 6 N -0.71 -23.02 5.53 -466.78 -2.58 -25.60 16 7 C 0.12 4.54 6.15 85.63 0.53 5.07 16 8 C 0.43 20.03 7.85 87.66 0.69 20.72 16 9 O -0.62 -31.95 15.24 -3.05 -0.05 -31.99 16 10 N -0.56 -28.28 5.29 -306.99 -1.62 -29.90 16 11 C -0.34 -18.49 9.68 84.04 0.81 -17.68 16 12 H 0.09 5.02 7.16 -2.91 -0.02 5.00 16 13 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 14 N -0.92 -48.94 13.05 21.66 0.28 -48.65 16 15 Si 1.00 41.77 29.55 68.60 2.03 43.80 16 16 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 17 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 18 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 19 N -0.55 -12.17 4.42 -879.38 -3.89 -16.05 16 20 C 0.06 1.00 4.82 85.26 0.41 1.41 16 21 C -0.12 -1.65 5.63 30.21 0.17 -1.48 16 22 C -0.12 -1.38 5.30 28.85 0.15 -1.23 16 23 C -0.12 -1.59 5.30 28.85 0.15 -1.44 16 24 C -0.16 -2.57 4.23 30.21 0.13 -2.44 16 25 C 0.07 1.52 4.12 85.26 0.35 1.87 16 26 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.09 1.26 5.75 -2.39 -0.01 1.25 16 28 H 0.06 1.27 5.72 -2.39 -0.01 1.26 16 29 H 0.41 13.03 7.44 -92.71 -0.69 12.34 16 30 H 0.09 3.22 8.14 -2.39 -0.02 3.20 16 31 H 0.09 3.22 8.14 -2.38 -0.02 3.20 16 32 H 0.40 19.38 7.90 -92.70 -0.73 18.65 16 33 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 34 H 0.05 0.66 5.36 -2.39 -0.01 0.65 16 35 H 0.07 1.15 8.14 -2.38 -0.02 1.13 16 36 H 0.06 1.06 7.08 -2.39 -0.02 1.05 16 37 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.06 0.70 7.52 -2.38 -0.02 0.68 16 40 H 0.05 0.82 7.52 -2.38 -0.02 0.81 16 41 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 42 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.08 1.24 4.07 -2.38 -0.01 1.23 16 44 H 0.06 1.47 6.59 -2.39 -0.02 1.46 16 45 H 0.06 1.62 5.49 -2.39 -0.01 1.60 16 Total: -1.00 -65.38 343.33 -1.15 -66.54 By element: Atomic # 1 Polarization: 43.04 SS G_CDS: -0.40 Total: 42.64 kcal Atomic # 6 Polarization: 15.22 SS G_CDS: 5.12 Total: 20.33 kcal Atomic # 7 Polarization: -112.40 SS G_CDS: -7.81 Total: -120.21 kcal Atomic # 8 Polarization: -53.01 SS G_CDS: -0.09 Total: -53.10 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.80 kcal Total: -65.38 -1.15 -66.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343518398.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.600 kcal (2) G-P(sol) polarization free energy of solvation -65.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds