Wall clock time and date at job start Tue Mar 31 2020 03:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47146 * 2 1 4 4 N 1.46500 * 109.46977 * 240.00484 * 2 1 3 5 5 C 1.34778 * 120.00301 * 85.00254 * 4 2 1 6 6 O 1.21587 * 119.99903 * 359.97438 * 5 4 2 7 7 N 1.34781 * 119.99770 * 179.97438 * 5 4 2 8 8 C 1.46493 * 119.99616 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.47269 * 179.97438 * 8 7 5 10 10 C 1.50693 * 109.47439 * 179.97438 * 9 8 7 11 11 H 1.08002 * 120.00367 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00519 * 179.97438 * 10 9 8 13 13 N 1.31520 * 119.99427 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00726 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.46999 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.47081 * 119.99982 * 14 12 10 17 17 H 1.48494 * 109.47413 * 240.00502 * 14 12 10 18 18 C 1.50696 * 109.47170 * 120.00004 * 2 1 3 19 19 O 1.21287 * 119.99541 * 94.72833 * 18 2 1 20 20 N 1.34772 * 120.00200 * 275.00652 * 18 2 1 21 21 C 1.46924 * 120.62963 * 4.63880 * 20 18 2 22 22 C 1.53635 * 108.54287 * 126.37048 * 21 20 18 23 23 C 1.53040 * 109.23987 * 54.85638 * 22 21 20 24 24 C 1.53044 * 109.53758 * 298.51329 * 23 22 21 25 25 C 1.46923 * 120.63128 * 184.91990 * 20 18 2 26 26 H 1.09004 * 109.46966 * 64.96462 * 1 2 3 27 27 H 1.08994 * 109.47617 * 184.96228 * 1 2 3 28 28 H 1.08997 * 109.47533 * 304.96877 * 1 2 3 29 29 H 0.97003 * 119.99667 * 264.99277 * 4 2 1 30 30 H 0.96994 * 120.00028 * 359.97438 * 7 5 4 31 31 H 1.09005 * 109.47325 * 300.00105 * 8 7 5 32 32 H 1.09000 * 109.47574 * 59.99961 * 8 7 5 33 33 H 1.08998 * 109.46901 * 300.00214 * 9 8 7 34 34 H 1.09000 * 109.46658 * 59.99641 * 9 8 7 35 35 H 0.96999 * 119.99640 * 179.97438 * 13 12 10 36 36 H 1.09001 * 109.58964 * 246.19954 * 21 20 18 37 37 H 1.08997 * 109.58930 * 6.62860 * 21 20 18 38 38 H 1.08995 * 109.62785 * 294.86694 * 22 21 20 39 39 H 1.08995 * 109.42686 * 174.72184 * 22 21 20 40 40 H 1.08999 * 109.46047 * 178.48924 * 23 22 21 41 41 H 1.09004 * 109.45918 * 58.52910 * 23 22 21 42 42 H 1.08999 * 109.49683 * 301.41520 * 24 23 22 43 43 H 1.09001 * 109.49307 * 181.31841 * 24 23 22 44 44 H 1.08999 * 109.58948 * 353.37505 * 25 20 18 45 45 H 1.09000 * 109.58557 * 113.79809 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1470 -0.0181 -2.3572 6 8 1.8575 1.1615 -2.4118 7 7 2.5968 -0.6534 -3.4575 8 6 2.7362 0.0774 -4.7195 9 6 3.2619 -0.8684 -5.8012 10 6 3.4047 -0.1169 -7.0995 11 1 3.1468 0.9307 -7.1483 12 6 3.8657 -0.7664 -8.2250 13 7 4.1802 -2.0420 -8.1655 14 14 4.0421 0.1649 -9.8346 15 1 3.6252 1.5766 -9.6379 16 1 5.4591 0.1248 -10.2770 17 1 3.1827 -0.4659 -10.8683 18 6 2.0323 -0.7104 1.2304 19 8 2.3161 -1.8884 1.1771 20 7 2.1609 -0.0381 2.3914 21 6 1.7207 1.3594 2.4999 22 6 0.7567 1.4770 3.6904 23 6 1.4395 0.9341 4.9478 24 6 1.7793 -0.5447 4.7477 25 6 2.7496 -0.6869 3.5709 26 1 -0.3633 0.4349 -0.9312 27 1 -0.3634 -1.0237 0.0889 28 1 -0.3634 0.5890 0.8421 29 1 2.2490 -1.6317 -1.1527 30 1 2.8281 -1.5943 -3.4138 31 1 1.7653 0.4707 -5.0208 32 1 3.4368 0.9018 -4.5866 33 1 4.2328 -1.2613 -5.4996 34 1 2.5616 -1.6931 -5.9342 35 1 4.5042 -2.4991 -8.9574 36 1 2.5852 2.0034 2.6613 37 1 1.2093 1.6537 1.5834 38 1 -0.1460 0.9004 3.4888 39 1 0.4941 2.5239 3.8422 40 1 0.7685 1.0404 5.8001 41 1 2.3553 1.4950 5.1346 42 1 0.8668 -1.1022 4.5362 43 1 2.2444 -0.9367 5.6522 44 1 2.9174 -1.7433 3.3612 45 1 3.6963 -0.2064 3.8178 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343716919.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:28 Heat of formation + Delta-G solvation = -82.938490 kcal Electronic energy + Delta-G solvation = -24084.853808 eV Core-core repulsion = 20522.626586 eV Total energy + Delta-G solvation = -3562.227222 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.84512 -39.42318 -37.74444 -35.40130 -34.47311 -33.37284 -32.81863 -31.70688 -30.60752 -28.99640 -26.25329 -24.89320 -24.14762 -23.28434 -21.46691 -20.87432 -20.43690 -19.34372 -18.49445 -17.05343 -16.65974 -16.30146 -15.65684 -15.49622 -15.07547 -14.96000 -14.63360 -14.44709 -14.33218 -14.16236 -13.71294 -13.60817 -13.36328 -13.11634 -12.80262 -12.46447 -12.41766 -12.24803 -11.82789 -11.71129 -11.42564 -11.16385 -11.15271 -11.02992 -11.02338 -10.59626 -10.30149 -10.00396 -9.94884 -9.54140 -9.22252 -9.12207 -9.00299 -8.47007 -8.24086 -6.06499 -4.09066 2.23591 2.46459 3.13945 3.30415 3.37972 3.43322 3.56792 4.05944 4.28659 4.40667 4.41753 4.46558 4.61267 4.70121 4.83262 4.90722 4.95642 5.02685 5.08469 5.29586 5.30574 5.34416 5.39397 5.41300 5.46431 5.58964 5.61729 5.64344 5.85450 6.00834 6.11115 6.32014 6.42381 6.51068 6.80113 6.98851 7.02383 7.26529 7.60417 7.66877 7.79569 7.92917 8.28437 8.44564 8.94617 8.99839 9.55519 11.05230 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.041362 B = 0.002344 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.782887 B =11944.080220 C =12249.707445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.148 3.852 3 H 0.109 0.891 4 N -0.739 5.739 5 C 0.703 3.297 6 O -0.599 6.599 7 N -0.736 5.736 8 C 0.141 3.859 9 C 0.012 3.988 10 C -0.519 4.519 11 H 0.060 0.940 12 C 0.057 3.943 13 N -0.894 5.894 14 Si 0.897 3.103 15 H -0.271 1.271 16 H -0.284 1.284 17 H -0.284 1.284 18 C 0.517 3.483 19 O -0.535 6.535 20 N -0.609 5.609 21 C 0.098 3.902 22 C -0.135 4.135 23 C -0.121 4.121 24 C -0.134 4.134 25 C 0.110 3.890 26 H 0.079 0.921 27 H 0.063 0.937 28 H 0.067 0.933 29 H 0.404 0.596 30 H 0.395 0.605 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.022 0.978 34 H 0.023 0.977 35 H 0.261 0.739 36 H 0.074 0.926 37 H 0.092 0.908 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.066 0.934 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.075 0.925 44 H 0.093 0.907 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.467 4.329 28.167 29.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.038 3.962 3 H 0.126 0.874 4 N -0.398 5.398 5 C 0.403 3.597 6 O -0.478 6.478 7 N -0.389 5.389 8 C 0.018 3.982 9 C -0.026 4.026 10 C -0.558 4.558 11 H 0.078 0.922 12 C -0.144 4.144 13 N -0.533 5.533 14 Si 0.725 3.275 15 H -0.196 1.196 16 H -0.210 1.210 17 H -0.210 1.210 18 C 0.304 3.696 19 O -0.411 6.411 20 N -0.344 5.344 21 C -0.024 4.024 22 C -0.173 4.173 23 C -0.159 4.159 24 C -0.173 4.173 25 C -0.013 4.013 26 H 0.098 0.902 27 H 0.082 0.918 28 H 0.086 0.914 29 H 0.240 0.760 30 H 0.228 0.772 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.041 0.959 34 H 0.041 0.959 35 H 0.071 0.929 36 H 0.092 0.908 37 H 0.111 0.889 38 H 0.088 0.912 39 H 0.096 0.904 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.086 0.914 43 H 0.093 0.907 44 H 0.112 0.888 45 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.497 4.650 27.928 29.048 hybrid contribution 0.369 -0.445 -0.790 0.979 sum -6.128 4.205 27.138 28.137 Atomic orbital electron populations 1.22167 0.92970 1.02980 1.03670 1.20509 0.95531 0.97539 0.82648 0.87355 1.44909 1.72661 1.14288 1.07966 1.15965 0.78526 0.85049 0.80190 1.90873 1.57842 1.14380 1.84749 1.45524 1.69455 1.14122 1.09790 1.21605 1.00416 0.95586 0.80594 1.19339 0.96646 0.94666 0.91942 1.21086 1.44078 0.96694 0.93943 0.92156 1.25010 0.95259 0.94934 0.99213 1.69974 1.44619 1.09205 1.29506 0.86451 0.77700 0.80099 0.83276 1.19578 1.20975 1.20966 1.20776 0.77109 0.87130 0.84536 1.90689 1.50261 1.15537 1.84624 1.48032 1.62002 1.13433 1.10902 1.22017 0.98594 0.81761 1.00062 1.22001 0.98634 1.02003 0.94709 1.21529 1.00882 0.95833 0.97614 1.21915 1.00182 0.97071 0.98105 1.21623 0.95591 0.99844 0.84202 0.90182 0.91797 0.91404 0.76016 0.77188 0.92701 0.92746 0.95926 0.95912 0.92929 0.90796 0.88942 0.91240 0.90368 0.91569 0.91630 0.91431 0.90667 0.88831 0.91351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 9.27 37.16 0.34 -1.31 16 2 C 0.15 1.78 2.11 -69.09 -0.15 1.64 16 3 H 0.11 1.33 6.17 -51.93 -0.32 1.01 16 4 N -0.74 -10.66 5.06 -59.81 -0.30 -10.96 16 5 C 0.70 12.64 8.53 -86.91 -0.74 11.90 16 6 O -0.60 -12.54 16.01 5.29 0.08 -12.46 16 7 N -0.74 -13.56 5.56 -65.23 -0.36 -13.92 16 8 C 0.14 3.07 5.61 -4.04 -0.02 3.05 16 9 C 0.01 0.29 5.09 -27.89 -0.14 0.15 16 10 C -0.52 -14.56 9.11 -34.44 -0.31 -14.88 16 11 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 12 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 13 N -0.89 -26.44 13.29 55.43 0.74 -25.71 16 14 Si 0.90 21.57 29.54 -169.99 -5.02 16.55 16 15 H -0.27 -6.41 7.11 56.52 0.40 -6.00 16 16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 18 C 0.52 6.12 6.90 -10.99 -0.08 6.04 16 19 O -0.53 -7.89 15.43 5.55 0.09 -7.80 16 20 N -0.61 -5.44 2.97 -172.51 -0.51 -5.95 16 21 C 0.10 0.64 6.03 -3.48 -0.02 0.62 16 22 C -0.14 -0.67 6.10 -26.38 -0.16 -0.83 16 23 C -0.12 -0.57 5.88 -26.69 -0.16 -0.73 16 24 C -0.13 -0.77 6.08 -26.61 -0.16 -0.93 16 25 C 0.11 0.85 6.44 -3.71 -0.02 0.82 16 26 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 27 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.07 0.53 7.05 -51.93 -0.37 0.16 16 29 H 0.40 5.50 7.80 -40.82 -0.32 5.18 16 30 H 0.39 6.46 8.49 -40.82 -0.35 6.12 16 31 H 0.05 1.24 8.14 -51.93 -0.42 0.81 16 32 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.02 0.60 8.14 -51.93 -0.42 0.17 16 35 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 36 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.09 0.60 4.75 -51.93 -0.25 0.35 16 38 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 40 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 42 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.09 0.88 7.00 -51.93 -0.36 0.51 16 45 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 LS Contribution 363.04 15.07 5.47 5.47 Total: -1.00 -33.64 363.04 -8.96 -42.60 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -7.42 Total: 5.10 kcal Atomic # 6 Polarization: 8.79 SS G_CDS: -1.72 Total: 7.08 kcal Atomic # 7 Polarization: -56.10 SS G_CDS: -0.44 Total: -56.54 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: 0.17 Total: -20.26 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -33.64 -8.96 -42.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343716919.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.342 kcal (2) G-P(sol) polarization free energy of solvation -33.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds