Wall clock time and date at job start Tue Mar 31 2020 03:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47146 * 2 1 4 4 N 1.46500 * 109.46977 * 240.00484 * 2 1 3 5 5 C 1.34778 * 120.00301 * 85.00254 * 4 2 1 6 6 O 1.21587 * 119.99903 * 359.97438 * 5 4 2 7 7 N 1.34781 * 119.99770 * 179.97438 * 5 4 2 8 8 C 1.46493 * 119.99616 * 179.97438 * 7 5 4 9 9 C 1.53002 * 109.47269 * 179.97438 * 8 7 5 10 10 C 1.50693 * 109.47439 * 179.97438 * 9 8 7 11 11 H 1.08002 * 120.00367 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00519 * 179.97438 * 10 9 8 13 13 N 1.31520 * 119.99427 * 0.02562 * 12 10 9 14 14 Si 1.86796 * 120.00726 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.46999 * 0.02562 * 14 12 10 16 16 H 1.48499 * 109.47081 * 119.99982 * 14 12 10 17 17 H 1.48494 * 109.47413 * 240.00502 * 14 12 10 18 18 C 1.50696 * 109.47170 * 120.00004 * 2 1 3 19 19 O 1.21287 * 119.99541 * 94.72833 * 18 2 1 20 20 N 1.34772 * 120.00200 * 275.00652 * 18 2 1 21 21 C 1.46924 * 120.62963 * 4.63880 * 20 18 2 22 22 C 1.53635 * 108.54287 * 126.37048 * 21 20 18 23 23 C 1.53040 * 109.23987 * 54.85638 * 22 21 20 24 24 C 1.53044 * 109.53758 * 298.51329 * 23 22 21 25 25 C 1.46923 * 120.63128 * 184.91990 * 20 18 2 26 26 H 1.09004 * 109.46966 * 64.96462 * 1 2 3 27 27 H 1.08994 * 109.47617 * 184.96228 * 1 2 3 28 28 H 1.08997 * 109.47533 * 304.96877 * 1 2 3 29 29 H 0.97003 * 119.99667 * 264.99277 * 4 2 1 30 30 H 0.96994 * 120.00028 * 359.97438 * 7 5 4 31 31 H 1.09005 * 109.47325 * 300.00105 * 8 7 5 32 32 H 1.09000 * 109.47574 * 59.99961 * 8 7 5 33 33 H 1.08998 * 109.46901 * 300.00214 * 9 8 7 34 34 H 1.09000 * 109.46658 * 59.99641 * 9 8 7 35 35 H 0.96999 * 119.99640 * 179.97438 * 13 12 10 36 36 H 1.09001 * 109.58964 * 246.19954 * 21 20 18 37 37 H 1.08997 * 109.58930 * 6.62860 * 21 20 18 38 38 H 1.08995 * 109.62785 * 294.86694 * 22 21 20 39 39 H 1.08995 * 109.42686 * 174.72184 * 22 21 20 40 40 H 1.08999 * 109.46047 * 178.48924 * 23 22 21 41 41 H 1.09004 * 109.45918 * 58.52910 * 23 22 21 42 42 H 1.08999 * 109.49683 * 301.41520 * 24 23 22 43 43 H 1.09001 * 109.49307 * 181.31841 * 24 23 22 44 44 H 1.08999 * 109.58948 * 353.37505 * 25 20 18 45 45 H 1.09000 * 109.58557 * 113.79809 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 2.1470 -0.0181 -2.3572 6 8 1.8575 1.1615 -2.4118 7 7 2.5968 -0.6534 -3.4575 8 6 2.7362 0.0774 -4.7195 9 6 3.2619 -0.8684 -5.8012 10 6 3.4047 -0.1169 -7.0995 11 1 3.1468 0.9307 -7.1483 12 6 3.8657 -0.7664 -8.2250 13 7 4.1802 -2.0420 -8.1655 14 14 4.0421 0.1649 -9.8346 15 1 3.6252 1.5766 -9.6379 16 1 5.4591 0.1248 -10.2770 17 1 3.1827 -0.4659 -10.8683 18 6 2.0323 -0.7104 1.2304 19 8 2.3161 -1.8884 1.1771 20 7 2.1609 -0.0381 2.3914 21 6 1.7207 1.3594 2.4999 22 6 0.7567 1.4770 3.6904 23 6 1.4395 0.9341 4.9478 24 6 1.7793 -0.5447 4.7477 25 6 2.7496 -0.6869 3.5709 26 1 -0.3633 0.4349 -0.9312 27 1 -0.3634 -1.0237 0.0889 28 1 -0.3634 0.5890 0.8421 29 1 2.2490 -1.6317 -1.1527 30 1 2.8281 -1.5943 -3.4138 31 1 1.7653 0.4707 -5.0208 32 1 3.4368 0.9018 -4.5866 33 1 4.2328 -1.2613 -5.4996 34 1 2.5616 -1.6931 -5.9342 35 1 4.5042 -2.4991 -8.9574 36 1 2.5852 2.0034 2.6613 37 1 1.2093 1.6537 1.5834 38 1 -0.1460 0.9004 3.4888 39 1 0.4941 2.5239 3.8422 40 1 0.7685 1.0404 5.8001 41 1 2.3553 1.4950 5.1346 42 1 0.8668 -1.1022 4.5362 43 1 2.2444 -0.9367 5.6522 44 1 2.9174 -1.7433 3.3612 45 1 3.6963 -0.2064 3.8178 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000343716919.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:27 Heat of formation + Delta-G solvation = -106.387845 kcal Electronic energy + Delta-G solvation = -24085.870649 eV Core-core repulsion = 20522.626586 eV Total energy + Delta-G solvation = -3563.244063 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.80272 -40.71265 -38.49964 -36.86841 -35.94720 -34.84045 -34.03311 -32.52252 -31.76865 -30.57384 -27.02561 -26.66191 -25.00251 -24.02880 -22.94032 -22.14665 -21.58742 -20.26238 -19.59520 -18.48450 -17.95292 -17.75387 -16.76408 -16.56434 -16.47458 -16.29731 -15.65929 -15.40130 -15.30527 -15.07106 -14.92557 -14.75925 -14.29646 -14.27508 -14.19602 -13.57900 -13.30543 -13.19734 -13.19608 -12.95229 -12.74832 -12.49790 -12.23495 -12.21471 -11.87602 -11.68244 -11.63547 -11.50306 -11.48553 -11.22450 -10.90691 -10.60741 -10.42055 -9.83181 -9.72306 -8.23190 -6.33612 1.25959 1.42240 1.42763 1.53641 1.57286 2.00325 2.14110 2.42267 3.11674 3.23585 3.31129 3.81233 3.93386 3.97077 4.01089 4.03624 4.12521 4.35359 4.46244 4.48118 4.53691 4.56082 4.60445 4.70097 4.81410 4.87656 4.90807 4.93209 5.04966 5.12403 5.16938 5.23706 5.29699 5.34196 5.45994 5.49676 5.52372 5.59901 5.78760 5.95532 6.17347 6.20688 6.80182 6.91561 7.03078 7.35699 7.51817 8.89112 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.041362 B = 0.002344 C = 0.002285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.782887 B =11944.080220 C =12249.707445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.144 3.856 3 H 0.110 0.890 4 N -0.728 5.728 5 C 0.706 3.294 6 O -0.628 6.628 7 N -0.734 5.734 8 C 0.162 3.838 9 C 0.022 3.978 10 C -0.543 4.543 11 H 0.062 0.938 12 C 0.004 3.996 13 N -0.928 5.928 14 Si 0.968 3.032 15 H -0.263 1.263 16 H -0.277 1.277 17 H -0.277 1.277 18 C 0.516 3.484 19 O -0.571 6.571 20 N -0.602 5.602 21 C 0.090 3.910 22 C -0.131 4.131 23 C -0.119 4.119 24 C -0.129 4.129 25 C 0.105 3.895 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.097 0.903 29 H 0.409 0.591 30 H 0.405 0.595 31 H 0.048 0.952 32 H 0.047 0.953 33 H 0.007 0.993 34 H 0.007 0.993 35 H 0.265 0.735 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.064 0.936 39 H 0.096 0.904 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.056 0.944 43 H 0.089 0.911 44 H 0.072 0.928 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.873 5.729 29.420 30.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.035 3.965 3 H 0.128 0.872 4 N -0.386 5.386 5 C 0.405 3.595 6 O -0.509 6.509 7 N -0.388 5.388 8 C 0.038 3.962 9 C -0.016 4.016 10 C -0.582 4.582 11 H 0.080 0.920 12 C -0.195 4.195 13 N -0.568 5.568 14 Si 0.792 3.208 15 H -0.187 1.187 16 H -0.203 1.203 17 H -0.203 1.203 18 C 0.304 3.696 19 O -0.451 6.451 20 N -0.335 5.335 21 C -0.031 4.031 22 C -0.169 4.169 23 C -0.157 4.157 24 C -0.167 4.167 25 C -0.017 4.017 26 H 0.082 0.918 27 H 0.081 0.919 28 H 0.116 0.884 29 H 0.246 0.754 30 H 0.240 0.760 31 H 0.066 0.934 32 H 0.065 0.935 33 H 0.025 0.975 34 H 0.026 0.974 35 H 0.074 0.926 36 H 0.104 0.896 37 H 0.111 0.889 38 H 0.083 0.917 39 H 0.115 0.885 40 H 0.096 0.904 41 H 0.091 0.909 42 H 0.075 0.925 43 H 0.108 0.892 44 H 0.091 0.909 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.913 6.056 29.254 30.664 hybrid contribution 0.503 -0.883 -1.067 1.474 sum -6.410 5.173 28.187 29.366 Atomic orbital electron populations 1.22104 0.91518 1.03320 1.04052 1.20716 0.96659 0.97263 0.81846 0.87224 1.44830 1.71695 1.14447 1.07626 1.15955 0.78170 0.84671 0.80669 1.90849 1.59092 1.15662 1.85305 1.45263 1.69889 1.14502 1.09139 1.21107 0.99479 0.94566 0.81092 1.19148 0.95451 0.94553 0.92435 1.21493 1.44280 0.97083 0.95308 0.92023 1.25918 0.94738 0.95833 1.02977 1.70082 1.45255 1.10725 1.30746 0.85354 0.77882 0.78964 0.78588 1.18745 1.20309 1.20277 1.20675 0.77099 0.86695 0.85174 1.90674 1.52230 1.16955 1.85236 1.48142 1.60754 1.14306 1.10262 1.22272 0.99595 0.80252 1.00997 1.21999 0.97872 1.03140 0.93935 1.21540 1.01484 0.94801 0.97844 1.21881 0.99167 0.98059 0.97583 1.21761 0.96826 0.98724 0.84394 0.91836 0.91945 0.88430 0.75447 0.76002 0.93364 0.93496 0.97511 0.97421 0.92596 0.89580 0.88931 0.91692 0.88517 0.90443 0.90872 0.92510 0.89240 0.90915 0.90048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.00 9.27 71.98 0.67 -2.33 16 2 C 0.14 3.39 2.11 44.24 0.09 3.48 16 3 H 0.11 2.58 6.17 -2.39 -0.01 2.57 16 4 N -0.73 -20.86 5.06 -461.42 -2.33 -23.20 16 5 C 0.71 25.32 8.53 179.05 1.53 26.85 16 6 O -0.63 -26.18 16.01 -3.99 -0.06 -26.24 16 7 N -0.73 -27.21 5.56 -478.53 -2.66 -29.87 16 8 C 0.16 7.14 5.61 86.38 0.48 7.63 16 9 C 0.02 1.12 5.09 29.85 0.15 1.27 16 10 C -0.54 -30.69 9.11 25.60 0.23 -30.46 16 11 H 0.06 3.39 7.74 -2.91 -0.02 3.37 16 12 C 0.00 0.22 5.46 84.65 0.46 0.68 16 13 N -0.93 -55.30 13.29 21.45 0.28 -55.02 16 14 Si 0.97 44.05 29.54 68.60 2.03 46.08 16 15 H -0.26 -11.56 7.11 99.48 0.71 -10.85 16 16 H -0.28 -12.29 7.11 99.48 0.71 -11.58 16 17 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 18 C 0.52 11.96 6.90 87.66 0.60 12.56 16 19 O -0.57 -16.99 15.43 -3.05 -0.05 -17.04 16 20 N -0.60 -10.02 2.97 -818.07 -2.43 -12.45 16 21 C 0.09 0.98 6.03 86.51 0.52 1.50 16 22 C -0.13 -0.94 6.10 30.82 0.19 -0.75 16 23 C -0.12 -0.79 5.88 30.62 0.18 -0.61 16 24 C -0.13 -1.24 6.08 30.67 0.19 -1.05 16 25 C 0.10 1.51 6.44 86.36 0.56 2.06 16 26 H 0.06 1.50 8.14 -2.38 -0.02 1.48 16 27 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.10 1.32 7.05 -2.39 -0.02 1.31 16 29 H 0.41 11.13 7.80 -92.71 -0.72 10.41 16 30 H 0.41 13.37 8.49 -92.71 -0.79 12.59 16 31 H 0.05 2.19 8.14 -2.38 -0.02 2.17 16 32 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 33 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 34 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 35 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 36 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.09 1.01 4.75 -2.39 -0.01 1.00 16 38 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 39 H 0.10 0.39 8.14 -2.39 -0.02 0.37 16 40 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 41 H 0.07 0.41 8.14 -2.38 -0.02 0.39 16 42 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 44 H 0.07 1.37 7.00 -2.39 -0.02 1.35 16 45 H 0.08 0.96 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -72.06 363.04 0.12 -71.93 By element: Atomic # 1 Polarization: 25.49 SS G_CDS: -0.51 Total: 24.97 kcal Atomic # 6 Polarization: 14.97 SS G_CDS: 5.86 Total: 20.83 kcal Atomic # 7 Polarization: -113.40 SS G_CDS: -7.14 Total: -120.54 kcal Atomic # 8 Polarization: -43.17 SS G_CDS: -0.11 Total: -43.28 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Total: -72.06 0.12 -71.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343716919.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.453 kcal (2) G-P(sol) polarization free energy of solvation -72.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds