Wall clock time and date at job start Tue Mar 31 2020 03:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46496 * 109.46995 * 2 1 4 4 C 1.46502 * 120.00058 * 270.00039 * 3 2 1 5 5 C 1.50703 * 109.47010 * 90.00297 * 4 3 2 6 6 H 1.07997 * 120.00226 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99822 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00102 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99829 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47150 * 89.99676 * 9 7 5 11 11 H 1.48498 * 109.46754 * 209.99395 * 9 7 5 12 12 H 1.48497 * 109.46890 * 329.99281 * 9 7 5 13 13 C 1.34779 * 120.00216 * 90.00221 * 3 2 1 14 14 O 1.21274 * 119.99999 * 179.97438 * 13 3 2 15 15 C 1.50703 * 119.99541 * 359.97438 * 13 3 2 16 16 N 1.46902 * 109.46924 * 179.97438 * 15 13 3 17 17 C 1.46897 * 110.99826 * 66.04384 * 16 15 13 18 18 C 1.46900 * 111.00113 * 190.00210 * 16 15 13 19 19 H 1.08998 * 110.43155 * 302.54197 * 18 16 15 20 20 C 1.54622 * 110.48712 * 179.97438 * 18 16 15 21 21 C 1.54476 * 101.76729 * 216.52194 * 20 18 16 22 22 N 1.46765 * 105.47325 * 25.41566 * 21 20 18 23 23 C 1.46499 * 124.34974 * 162.98537 * 22 21 20 24 24 C 1.34423 * 111.29894 * 342.98728 * 22 21 20 25 25 O 1.21282 * 124.94196 * 180.44810 * 24 22 21 26 26 H 1.09001 * 109.47002 * 299.99701 * 1 2 3 27 27 H 1.08993 * 109.46955 * 60.00138 * 1 2 3 28 28 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46801 * 120.00145 * 2 1 3 30 30 H 1.09001 * 109.46998 * 239.99741 * 2 1 3 31 31 H 1.08996 * 109.47199 * 210.00336 * 4 3 2 32 32 H 1.09003 * 109.46945 * 330.00267 * 4 3 2 33 33 H 0.97000 * 120.00354 * 180.02562 * 8 7 5 34 34 H 1.09000 * 109.47193 * 300.00050 * 15 13 3 35 35 H 1.09004 * 109.47388 * 60.00115 * 15 13 3 36 36 H 1.09005 * 109.46924 * 60.00455 * 17 16 15 37 37 H 1.09002 * 109.46838 * 179.97438 * 17 16 15 38 38 H 1.08995 * 109.47598 * 299.99905 * 17 16 15 39 39 H 1.09003 * 110.97351 * 334.64154 * 20 18 16 40 40 H 1.09010 * 110.96837 * 98.36484 * 20 18 16 41 41 H 1.08998 * 110.24596 * 144.41541 * 21 20 18 42 42 H 1.09000 * 110.24616 * 266.41962 * 21 20 18 43 43 H 1.08994 * 109.46849 * 90.00256 * 23 22 21 44 44 H 1.08998 * 109.46973 * 210.00312 * 23 22 21 45 45 H 1.08999 * 109.46951 * 329.99783 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 1.0066 2.7823 -1.7037 6 1 0.1156 2.7247 -1.0961 7 6 0.9949 3.5048 -2.8779 8 7 2.0797 3.5745 -3.6180 9 14 -0.5616 4.3861 -3.4167 10 1 -0.5690 5.7627 -2.8600 11 1 -0.6052 4.4516 -4.8996 12 1 -1.7479 3.6443 -2.9189 13 6 2.2430 2.0166 1.1672 14 8 2.6477 3.1598 1.1671 15 6 1.9913 1.3063 2.4723 16 7 2.3103 2.2060 3.5889 17 6 1.3846 3.3460 3.6272 18 6 2.3062 1.4813 4.8667 19 1 1.3396 1.0052 5.0310 20 6 2.6437 2.4388 6.0329 21 6 3.4847 1.5282 6.9547 22 7 4.0628 0.5063 6.0741 23 6 5.1982 -0.3474 6.4323 24 6 3.4167 0.4544 4.8965 25 8 3.6845 -0.3056 3.9901 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5139 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 3.0644 2.7984 -1.1384 32 1 2.5506 1.3451 -2.0284 33 1 2.0716 4.0832 -4.4439 34 1 0.9433 1.0125 2.5298 35 1 2.6212 0.4185 2.5302 36 1 0.3648 2.9819 3.7521 37 1 1.6430 3.9958 4.4633 38 1 1.4590 3.9060 2.6950 39 1 3.2304 3.2882 5.6831 40 1 1.7372 2.7744 6.5368 41 1 4.2761 2.1045 7.4341 42 1 2.8483 1.0617 7.7067 43 1 4.8325 -1.2578 6.9071 44 1 5.7566 -0.6058 5.5326 45 1 5.8501 0.1864 7.1238 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352661277.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:55 Heat of formation + Delta-G solvation = -43.448073 kcal Electronic energy + Delta-G solvation = -25383.612814 eV Core-core repulsion = 21823.098025 eV Total energy + Delta-G solvation = -3560.514789 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.80521 -38.97753 -36.71993 -36.27909 -35.00385 -32.69266 -31.93181 -29.86944 -28.58743 -27.78672 -26.63464 -26.49214 -23.98094 -22.63367 -22.15296 -21.25704 -19.56348 -18.15962 -17.22719 -16.92828 -16.46184 -16.20700 -15.53108 -15.37677 -15.03228 -14.54231 -14.24742 -13.99565 -13.92972 -13.55061 -13.21048 -13.10655 -12.93308 -12.69588 -12.57867 -12.40409 -12.17907 -12.04804 -11.94321 -11.50539 -11.40382 -11.33857 -11.14429 -11.11377 -10.79813 -10.60680 -10.41864 -9.95433 -9.73718 -9.49145 -8.95781 -8.68995 -8.35956 -8.15143 -7.50636 -5.96628 -4.00478 2.40044 2.78488 3.34586 3.40296 3.41995 3.62400 3.73481 4.05195 4.25877 4.35356 4.51718 4.73180 4.77971 4.98765 5.05254 5.15729 5.20276 5.29059 5.38063 5.46530 5.47236 5.50539 5.55565 5.64853 5.73297 5.78805 5.90124 5.94383 5.98645 6.23210 6.30411 6.39063 6.42994 6.83475 6.84324 6.97719 7.13917 7.23810 7.56701 7.70528 8.00998 8.04137 8.33430 8.58861 9.00024 9.28265 9.64114 11.11450 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.025451 B = 0.003709 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.871850 B = 7547.918637 C = 7908.436052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.110 3.890 3 N -0.599 5.599 4 C 0.247 3.753 5 C -0.519 4.519 6 H 0.057 0.943 7 C 0.060 3.940 8 N -0.895 5.895 9 Si 0.895 3.105 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.275 1.275 13 C 0.512 3.488 14 O -0.530 6.530 15 C 0.017 3.983 16 N -0.504 5.504 17 C 0.018 3.982 18 C 0.049 3.951 19 H 0.078 0.922 20 C -0.126 4.126 21 C 0.106 3.894 22 N -0.625 5.625 23 C 0.097 3.903 24 C 0.530 3.470 25 O -0.517 6.517 26 H 0.045 0.955 27 H 0.075 0.925 28 H 0.052 0.948 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.043 0.957 32 H 0.030 0.970 33 H 0.262 0.738 34 H 0.054 0.946 35 H 0.127 0.873 36 H 0.019 0.981 37 H 0.066 0.934 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.090 0.910 41 H 0.081 0.919 42 H 0.071 0.929 43 H 0.054 0.946 44 H 0.076 0.924 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.377 -7.526 22.969 24.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.014 4.014 3 N -0.332 5.332 4 C 0.128 3.872 5 C -0.558 4.558 6 H 0.076 0.924 7 C -0.142 4.142 8 N -0.535 5.535 9 Si 0.723 3.277 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.200 1.200 13 C 0.298 3.702 14 O -0.407 6.407 15 C -0.114 4.114 16 N -0.229 5.229 17 C -0.130 4.130 18 C -0.064 4.064 19 H 0.095 0.905 20 C -0.164 4.164 21 C -0.018 4.018 22 N -0.361 5.361 23 C -0.044 4.044 24 C 0.317 3.683 25 O -0.392 6.392 26 H 0.064 0.936 27 H 0.094 0.906 28 H 0.071 0.929 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.061 0.939 32 H 0.048 0.952 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.144 0.856 36 H 0.038 0.962 37 H 0.085 0.915 38 H 0.119 0.881 39 H 0.116 0.884 40 H 0.109 0.891 41 H 0.099 0.901 42 H 0.089 0.911 43 H 0.073 0.927 44 H 0.095 0.905 45 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.362 -7.117 22.229 23.381 hybrid contribution -1.757 0.111 -0.172 1.769 sum -0.394 -7.006 22.058 23.147 Atomic orbital electron populations 1.22220 0.96570 1.00750 1.03092 1.21386 0.94320 0.83905 1.01804 1.48218 1.64182 1.13200 1.07626 1.19257 0.97407 0.92436 0.78117 1.21453 0.97505 1.30845 1.06022 0.92429 1.24937 0.96357 0.96390 0.96519 1.69938 1.27447 1.41715 1.14380 0.86544 0.83376 0.80217 0.77530 1.20651 1.21238 1.20017 1.20046 0.78630 0.86792 0.84690 1.90604 1.45643 1.17531 1.86883 1.22503 1.01109 0.97639 0.90116 1.61632 1.52797 1.08657 0.99812 1.22654 0.91979 0.93261 1.05082 1.22324 0.97251 0.94662 0.92116 0.90490 1.22758 1.01042 0.98332 0.94310 1.22099 0.97517 0.89195 0.92956 1.48063 1.33170 1.38356 1.16469 1.21536 0.87550 0.93633 1.01716 1.20655 0.82911 0.83458 0.81325 1.90631 1.68506 1.41882 1.38181 0.93586 0.90616 0.92904 0.91876 0.90760 0.93940 0.95178 0.92837 0.92771 0.85584 0.96215 0.91490 0.88138 0.88366 0.89097 0.90106 0.91084 0.92712 0.90535 0.91049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.78 10.24 37.16 0.38 -2.40 16 2 C 0.11 1.97 5.98 -4.04 -0.02 1.95 16 3 N -0.60 -13.58 2.46 -175.06 -0.43 -14.01 16 4 C 0.25 6.72 5.20 -5.19 -0.03 6.69 16 5 C -0.52 -14.92 8.92 -34.44 -0.31 -15.22 16 6 H 0.06 1.64 7.42 -52.49 -0.39 1.25 16 7 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 8 N -0.90 -27.16 13.29 55.43 0.74 -26.43 16 9 Si 0.90 22.18 29.54 -169.99 -5.02 17.16 16 10 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 C 0.51 11.52 7.40 -10.98 -0.08 11.44 16 14 O -0.53 -13.87 13.89 5.56 0.08 -13.79 16 15 C 0.02 0.29 3.87 -4.97 -0.02 0.27 16 16 N -0.50 -8.01 4.34 -236.35 -1.03 -9.04 16 17 C 0.02 0.26 8.95 60.06 0.54 0.80 16 18 C 0.05 0.58 2.66 -67.73 -0.18 0.40 16 19 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 20 C -0.13 -1.02 5.43 -25.10 -0.14 -1.16 16 21 C 0.11 0.70 7.35 -3.12 -0.02 0.68 16 22 N -0.63 -6.31 3.33 -180.29 -0.60 -6.91 16 23 C 0.10 0.77 10.96 59.85 0.66 1.43 16 24 C 0.53 7.25 7.60 -10.86 -0.08 7.17 16 25 O -0.52 -8.94 14.81 5.56 0.08 -8.85 16 26 H 0.05 0.74 7.22 -51.93 -0.37 0.37 16 27 H 0.07 1.46 7.26 -51.93 -0.38 1.08 16 28 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.06 1.00 6.44 -51.93 -0.33 0.66 16 30 H 0.07 1.29 7.89 -51.93 -0.41 0.88 16 31 H 0.04 1.31 7.42 -51.93 -0.39 0.92 16 32 H 0.03 0.83 7.89 -51.93 -0.41 0.42 16 33 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 34 H 0.05 0.87 7.16 -51.93 -0.37 0.50 16 35 H 0.13 2.29 4.40 -51.93 -0.23 2.07 16 36 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.07 0.79 6.61 -51.93 -0.34 0.45 16 38 H 0.10 1.90 5.88 -51.93 -0.31 1.59 16 39 H 0.10 0.90 7.63 -51.93 -0.40 0.51 16 40 H 0.09 0.52 8.14 -51.92 -0.42 0.09 16 41 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 43 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.08 0.73 7.93 -51.93 -0.41 0.31 16 45 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 357.60 15.07 5.39 5.39 Total: -1.00 -36.09 357.60 -7.45 -43.54 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -7.26 Total: -0.75 kcal Atomic # 6 Polarization: 13.09 SS G_CDS: 0.60 Total: 13.69 kcal Atomic # 7 Polarization: -55.06 SS G_CDS: -1.32 Total: -56.38 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: 0.16 Total: -22.64 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -36.09 -7.45 -43.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352661277.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.094 kcal (2) G-P(sol) polarization free energy of solvation -36.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds