Wall clock time and date at job start Tue Mar 31 2020 03:39:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46496 * 109.46995 * 2 1 4 4 C 1.46502 * 120.00058 * 270.00039 * 3 2 1 5 5 C 1.50703 * 109.47010 * 90.00297 * 4 3 2 6 6 H 1.07997 * 120.00226 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99822 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00102 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99829 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.47150 * 89.99676 * 9 7 5 11 11 H 1.48498 * 109.46754 * 209.99395 * 9 7 5 12 12 H 1.48497 * 109.46890 * 329.99281 * 9 7 5 13 13 C 1.34779 * 120.00216 * 90.00221 * 3 2 1 14 14 O 1.21274 * 119.99999 * 179.97438 * 13 3 2 15 15 C 1.50703 * 119.99541 * 359.97438 * 13 3 2 16 16 N 1.46902 * 109.46924 * 179.97438 * 15 13 3 17 17 C 1.46897 * 110.99826 * 66.04384 * 16 15 13 18 18 C 1.46900 * 111.00113 * 190.00210 * 16 15 13 19 19 H 1.08998 * 110.43155 * 302.54197 * 18 16 15 20 20 C 1.54622 * 110.48712 * 179.97438 * 18 16 15 21 21 C 1.54476 * 101.76729 * 216.52194 * 20 18 16 22 22 N 1.46765 * 105.47325 * 25.41566 * 21 20 18 23 23 C 1.46499 * 124.34974 * 162.98537 * 22 21 20 24 24 C 1.34423 * 111.29894 * 342.98728 * 22 21 20 25 25 O 1.21282 * 124.94196 * 180.44810 * 24 22 21 26 26 H 1.09001 * 109.47002 * 299.99701 * 1 2 3 27 27 H 1.08993 * 109.46955 * 60.00138 * 1 2 3 28 28 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46801 * 120.00145 * 2 1 3 30 30 H 1.09001 * 109.46998 * 239.99741 * 2 1 3 31 31 H 1.08996 * 109.47199 * 210.00336 * 4 3 2 32 32 H 1.09003 * 109.46945 * 330.00267 * 4 3 2 33 33 H 0.97000 * 120.00354 * 180.02562 * 8 7 5 34 34 H 1.09000 * 109.47193 * 300.00050 * 15 13 3 35 35 H 1.09004 * 109.47388 * 60.00115 * 15 13 3 36 36 H 1.09005 * 109.46924 * 60.00455 * 17 16 15 37 37 H 1.09002 * 109.46838 * 179.97438 * 17 16 15 38 38 H 1.08995 * 109.47598 * 299.99905 * 17 16 15 39 39 H 1.09003 * 110.97351 * 334.64154 * 20 18 16 40 40 H 1.09010 * 110.96837 * 98.36484 * 20 18 16 41 41 H 1.08998 * 110.24596 * 144.41541 * 21 20 18 42 42 H 1.09000 * 110.24616 * 266.41962 * 21 20 18 43 43 H 1.08994 * 109.46849 * 90.00256 * 23 22 21 44 44 H 1.08998 * 109.46973 * 210.00312 * 23 22 21 45 45 H 1.08999 * 109.46951 * 329.99783 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 -1.2687 5 6 1.0066 2.7823 -1.7037 6 1 0.1156 2.7247 -1.0961 7 6 0.9949 3.5048 -2.8779 8 7 2.0797 3.5745 -3.6180 9 14 -0.5616 4.3861 -3.4167 10 1 -0.5690 5.7627 -2.8600 11 1 -0.6052 4.4516 -4.8996 12 1 -1.7479 3.6443 -2.9189 13 6 2.2430 2.0166 1.1672 14 8 2.6477 3.1598 1.1671 15 6 1.9913 1.3063 2.4723 16 7 2.3103 2.2060 3.5889 17 6 1.3846 3.3460 3.6272 18 6 2.3062 1.4813 4.8667 19 1 1.3396 1.0052 5.0310 20 6 2.6437 2.4388 6.0329 21 6 3.4847 1.5282 6.9547 22 7 4.0628 0.5063 6.0741 23 6 5.1982 -0.3474 6.4323 24 6 3.4167 0.4544 4.8965 25 8 3.6845 -0.3056 3.9901 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5139 0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 3.0644 2.7984 -1.1384 32 1 2.5506 1.3451 -2.0284 33 1 2.0716 4.0832 -4.4439 34 1 0.9433 1.0125 2.5298 35 1 2.6212 0.4185 2.5302 36 1 0.3648 2.9819 3.7521 37 1 1.6430 3.9958 4.4633 38 1 1.4590 3.9060 2.6950 39 1 3.2304 3.2882 5.6831 40 1 1.7372 2.7744 6.5368 41 1 4.2761 2.1045 7.4341 42 1 2.8483 1.0617 7.7067 43 1 4.8325 -1.2578 6.9071 44 1 5.7566 -0.6058 5.5326 45 1 5.8501 0.1864 7.1238 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352661277.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:54 Heat of formation + Delta-G solvation = -70.464592 kcal Electronic energy + Delta-G solvation = -25384.784339 eV Core-core repulsion = 21823.098025 eV Total energy + Delta-G solvation = -3561.686314 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.76032 -40.62666 -37.84790 -37.36478 -36.72936 -34.85186 -32.79226 -31.55154 -30.16197 -28.70617 -28.27298 -27.33808 -25.40778 -24.30722 -23.71816 -22.12750 -20.48439 -19.84479 -18.68566 -18.19258 -18.01873 -17.43004 -17.14816 -16.51678 -16.42569 -16.17633 -15.54446 -15.30935 -14.99038 -14.70374 -14.61185 -14.37840 -14.20845 -13.96529 -13.75240 -13.57054 -13.43052 -13.31904 -13.16304 -13.02526 -12.85699 -12.67447 -12.55761 -12.50022 -12.44328 -12.15791 -12.01041 -11.75229 -11.62881 -10.85146 -10.62778 -10.35985 -9.70594 -9.45380 -9.31102 -8.19750 -6.33718 1.36002 1.39312 1.42062 1.49002 1.86860 2.04932 2.25710 2.42147 3.02076 3.09440 3.27156 3.59104 3.73539 4.03814 4.08634 4.10439 4.21676 4.34459 4.39066 4.46106 4.48283 4.56625 4.61171 4.64090 4.68041 4.74796 4.87870 4.91014 4.97738 4.98120 5.03613 5.11374 5.21040 5.23676 5.45214 5.58872 5.62023 5.79151 5.90883 5.97713 6.09220 6.12321 6.72948 6.82178 7.11670 7.31032 7.53567 8.87850 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.025451 B = 0.003709 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.871850 B = 7547.918637 C = 7908.436052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.104 3.896 3 N -0.606 5.606 4 C 0.263 3.737 5 C -0.531 4.531 6 H 0.056 0.944 7 C 0.004 3.996 8 N -0.932 5.932 9 Si 0.968 3.032 10 H -0.280 1.280 11 H -0.276 1.276 12 H -0.261 1.261 13 C 0.501 3.499 14 O -0.577 6.577 15 C 0.037 3.963 16 N -0.528 5.528 17 C 0.025 3.975 18 C 0.047 3.953 19 H 0.096 0.904 20 C -0.119 4.119 21 C 0.105 3.895 22 N -0.622 5.622 23 C 0.092 3.908 24 C 0.512 3.488 25 O -0.568 6.568 26 H 0.049 0.951 27 H 0.044 0.956 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.076 0.924 31 H -0.006 1.006 32 H 0.018 0.982 33 H 0.266 0.734 34 H 0.075 0.925 35 H 0.125 0.875 36 H 0.037 0.963 37 H 0.097 0.903 38 H 0.052 0.948 39 H 0.085 0.915 40 H 0.124 0.876 41 H 0.103 0.897 42 H 0.101 0.899 43 H 0.069 0.931 44 H 0.051 0.949 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.550 -8.067 26.074 27.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.018 4.018 3 N -0.338 5.338 4 C 0.142 3.858 5 C -0.569 4.569 6 H 0.075 0.925 7 C -0.194 4.194 8 N -0.572 5.572 9 Si 0.792 3.208 10 H -0.206 1.206 11 H -0.201 1.201 12 H -0.185 1.185 13 C 0.290 3.710 14 O -0.457 6.457 15 C -0.093 4.093 16 N -0.254 5.254 17 C -0.123 4.123 18 C -0.065 4.065 19 H 0.114 0.886 20 C -0.157 4.157 21 C -0.017 4.017 22 N -0.356 5.356 23 C -0.049 4.049 24 C 0.299 3.701 25 O -0.447 6.447 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.110 0.890 29 H 0.108 0.892 30 H 0.094 0.906 31 H 0.012 0.988 32 H 0.036 0.964 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.142 0.858 36 H 0.056 0.944 37 H 0.116 0.884 38 H 0.071 0.929 39 H 0.103 0.897 40 H 0.143 0.857 41 H 0.121 0.879 42 H 0.119 0.881 43 H 0.087 0.913 44 H 0.070 0.930 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -0.572 -7.685 25.407 26.550 hybrid contribution -1.051 0.251 -1.052 1.508 sum -1.623 -7.434 24.355 25.516 Atomic orbital electron populations 1.22120 0.94979 1.02859 1.01694 1.21684 0.95589 0.81341 1.03229 1.48268 1.64360 1.14897 1.06319 1.18729 0.95644 0.91382 0.80087 1.21661 0.97673 1.31284 1.06299 0.92534 1.25889 0.99948 0.97057 0.96506 1.70070 1.29746 1.42481 1.14868 0.85414 0.79310 0.78614 0.77469 1.20578 1.20112 1.18497 1.21026 0.77399 0.86492 0.86132 1.90574 1.47592 1.19798 1.87738 1.22263 1.02053 0.96951 0.88079 1.61517 1.53606 1.09171 1.01060 1.22522 0.92898 0.93086 1.03756 1.22494 0.97642 0.95165 0.91154 0.88618 1.22839 1.02605 0.97286 0.92977 1.22402 0.98405 0.88428 0.92464 1.48285 1.32785 1.38578 1.15909 1.21700 0.87338 0.94592 1.01294 1.21110 0.83689 0.83445 0.81844 1.90588 1.70095 1.43950 1.40091 0.93144 0.93727 0.88985 0.89189 0.90577 0.98804 0.96363 0.92525 0.90762 0.85802 0.94449 0.88441 0.92946 0.89673 0.85731 0.87881 0.88052 0.91293 0.92960 0.88020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.03 10.24 71.98 0.74 -4.30 16 2 C 0.10 3.72 5.98 86.38 0.52 4.23 16 3 N -0.61 -28.55 2.46 -826.14 -2.03 -30.58 16 4 C 0.26 15.14 5.20 85.63 0.45 15.59 16 5 C -0.53 -31.54 8.92 25.60 0.23 -31.31 16 6 H 0.06 3.30 7.42 -2.91 -0.02 3.28 16 7 C 0.00 0.26 5.46 84.65 0.46 0.72 16 8 N -0.93 -58.30 13.29 21.45 0.28 -58.02 16 9 Si 0.97 46.05 29.54 68.60 2.03 48.07 16 10 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 11 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 12 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 13 C 0.50 23.43 7.40 87.66 0.65 24.08 16 14 O -0.58 -32.04 13.89 -3.01 -0.04 -32.08 16 15 C 0.04 1.30 3.87 85.56 0.33 1.63 16 16 N -0.53 -16.42 4.34 -901.66 -3.92 -20.34 16 17 C 0.02 0.71 8.95 127.69 1.14 1.85 16 18 C 0.05 1.01 2.66 44.91 0.12 1.13 16 19 H 0.10 1.72 8.14 -2.39 -0.02 1.70 16 20 C -0.12 -1.49 5.43 31.65 0.17 -1.31 16 21 C 0.10 0.95 7.35 86.83 0.64 1.59 16 22 N -0.62 -11.04 3.33 -842.91 -2.81 -13.85 16 23 C 0.09 1.27 10.96 127.77 1.40 2.67 16 24 C 0.51 13.41 7.60 87.90 0.67 14.08 16 25 O -0.57 -19.80 14.81 -3.04 -0.04 -19.85 16 26 H 0.05 1.54 7.22 -2.39 -0.02 1.52 16 27 H 0.04 1.69 7.26 -2.39 -0.02 1.68 16 28 H 0.09 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.09 2.75 6.44 -2.39 -0.02 2.74 16 30 H 0.08 2.66 7.89 -2.39 -0.02 2.64 16 31 H -0.01 -0.41 7.42 -2.39 -0.02 -0.43 16 32 H 0.02 1.08 7.89 -2.39 -0.02 1.06 16 33 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 34 H 0.07 2.28 7.16 -2.39 -0.02 2.26 16 35 H 0.12 4.52 4.40 -2.39 -0.01 4.51 16 36 H 0.04 0.91 8.14 -2.38 -0.02 0.89 16 37 H 0.10 2.11 6.61 -2.39 -0.02 2.10 16 38 H 0.05 2.04 5.88 -2.39 -0.01 2.03 16 39 H 0.08 1.33 7.63 -2.39 -0.02 1.31 16 40 H 0.12 0.75 8.14 -2.38 -0.02 0.73 16 41 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 42 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 43 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.05 0.99 7.93 -2.39 -0.02 0.97 16 45 H 0.10 0.77 8.14 -2.39 -0.02 0.76 16 Total: -1.00 -84.97 357.60 1.95 -83.01 By element: Atomic # 1 Polarization: 12.01 SS G_CDS: 0.97 Total: 12.99 kcal Atomic # 6 Polarization: 23.14 SS G_CDS: 7.51 Total: 30.65 kcal Atomic # 7 Polarization: -114.32 SS G_CDS: -8.47 Total: -122.79 kcal Atomic # 8 Polarization: -51.85 SS G_CDS: -0.09 Total: -51.93 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.07 kcal Total: -84.97 1.95 -83.01 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352661277.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.549 kcal (2) G-P(sol) polarization free energy of solvation -84.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds