Wall clock time and date at job start Tue Mar 31 2020 03:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46501 * 109.47356 * 2 1 4 4 C 1.46496 * 120.00500 * 89.99828 * 3 2 1 5 5 C 1.50695 * 109.47167 * 89.99776 * 4 3 2 6 6 H 1.08000 * 119.99910 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00365 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99536 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00319 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.46989 * 60.00274 * 9 7 5 11 11 H 1.48504 * 109.47185 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47381 * 300.00160 * 9 7 5 13 13 C 1.34777 * 119.99692 * 269.99838 * 3 2 1 14 14 O 1.21277 * 120.00375 * 180.02562 * 13 3 2 15 15 C 1.50704 * 119.99870 * 0.02562 * 13 3 2 16 16 N 1.46902 * 109.46967 * 180.02562 * 15 13 3 17 17 C 1.46901 * 110.99812 * 287.48729 * 16 15 13 18 18 C 1.46896 * 111.00160 * 163.53400 * 16 15 13 19 19 H 1.08999 * 110.43667 * 171.00785 * 18 16 15 20 20 C 1.54628 * 110.48707 * 293.69640 * 18 16 15 21 21 C 1.54482 * 101.76337 * 143.47511 * 20 18 16 22 22 N 1.46759 * 105.47523 * 334.58238 * 21 20 18 23 23 C 1.46500 * 124.34757 * 197.03595 * 22 21 20 24 24 C 1.34416 * 111.30035 * 17.02083 * 22 21 20 25 25 O 1.21280 * 124.94352 * 179.62687 * 24 22 21 26 26 H 1.09004 * 109.47114 * 300.00286 * 1 2 3 27 27 H 1.08999 * 109.47321 * 60.00547 * 1 2 3 28 28 H 1.09002 * 109.47792 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46949 * 239.99285 * 2 1 3 30 30 H 1.09010 * 109.47153 * 119.99900 * 2 1 3 31 31 H 1.09004 * 109.46734 * 330.00183 * 4 3 2 32 32 H 1.08988 * 109.47309 * 210.00441 * 4 3 2 33 33 H 0.97002 * 120.00070 * 179.97438 * 8 7 5 34 34 H 1.09002 * 109.47261 * 299.99585 * 15 13 3 35 35 H 1.08994 * 109.47403 * 60.00205 * 15 13 3 36 36 H 1.09003 * 109.47504 * 59.99905 * 17 16 15 37 37 H 1.09001 * 109.47238 * 180.02562 * 17 16 15 38 38 H 1.09005 * 109.46990 * 300.00065 * 17 16 15 39 39 H 1.09000 * 110.96720 * 261.59190 * 20 18 16 40 40 H 1.09003 * 110.96956 * 25.35599 * 20 18 16 41 41 H 1.09005 * 110.24416 * 215.58374 * 21 20 18 42 42 H 1.09003 * 110.31866 * 93.62392 * 21 20 18 43 43 H 1.09000 * 109.46850 * 180.02562 * 23 22 21 44 44 H 1.09000 * 109.47212 * 300.00294 * 23 22 21 45 45 H 1.08993 * 109.47091 * 60.00847 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 1.2686 5 6 3.6857 1.8350 1.7037 6 1 4.3428 1.2308 1.0958 7 6 4.1491 2.3897 2.8779 8 7 3.3488 3.1251 3.6184 9 14 5.9135 2.0967 3.4168 10 1 6.8407 2.6210 2.3820 11 1 6.1610 2.7967 4.7029 12 1 6.1417 0.6401 3.5936 13 6 2.2430 2.0165 -1.1672 14 8 2.6477 3.1597 -1.1674 15 6 1.9912 1.3061 -2.4723 16 7 2.3102 2.2058 -3.5889 17 6 1.2962 3.2605 -3.7213 18 6 2.4569 1.4562 -4.8437 19 1 2.5351 2.1402 -5.6887 20 6 3.6922 0.5284 -4.7785 21 6 3.1975 -0.7099 -5.5584 22 7 1.7357 -0.6959 -5.4291 23 6 0.8713 -1.8483 -5.6955 24 6 1.2920 0.5100 -5.0345 25 8 0.1273 0.7975 -4.8565 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3635 -1.0276 0.0005 29 1 1.8932 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8901 31 1 1.5817 1.6878 2.0283 32 1 2.0955 3.1410 1.1383 33 1 3.6746 3.5150 4.4447 34 1 2.6211 0.4184 -2.5302 35 1 0.9432 1.0125 -2.5299 36 1 1.2574 3.8447 -2.8019 37 1 1.5564 3.9121 -4.5555 38 1 0.3221 2.8070 -3.9050 39 1 4.5492 0.9847 -5.2740 40 1 3.9319 0.2698 -3.7471 41 1 3.6063 -1.6201 -5.1195 42 1 3.4842 -0.6359 -6.6075 43 1 -0.1686 -1.5696 -5.5247 44 1 0.9968 -2.1649 -6.7309 45 1 1.1423 -2.6674 -5.0296 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352661278.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:56 Heat of formation + Delta-G solvation = -45.778260 kcal Electronic energy + Delta-G solvation = -25670.624484 eV Core-core repulsion = 22110.008650 eV Total energy + Delta-G solvation = -3560.615834 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.03540 -38.98258 -36.62436 -36.31125 -35.07599 -32.76703 -31.93560 -30.04401 -28.80134 -27.46305 -26.90664 -26.48515 -23.65405 -22.95757 -22.41388 -21.34388 -19.53724 -18.36577 -17.21556 -16.88017 -16.39954 -16.17058 -15.71255 -15.49615 -15.08067 -14.50858 -14.22921 -14.16400 -13.91685 -13.77182 -13.29466 -13.19879 -12.83073 -12.73796 -12.64665 -12.34596 -12.25793 -12.01776 -11.90195 -11.65012 -11.46023 -11.25843 -11.10999 -10.99590 -10.88098 -10.66921 -10.47138 -10.37435 -10.08126 -9.59103 -9.00530 -8.82059 -8.38746 -8.06959 -7.57519 -5.99530 -4.04010 2.35686 2.75962 3.34443 3.39068 3.41012 3.52000 3.60192 4.05869 4.29658 4.33924 4.49621 4.68749 4.75907 4.99408 5.03925 5.09797 5.20139 5.23694 5.29575 5.34809 5.43093 5.46312 5.51543 5.66508 5.69840 5.72125 5.80932 5.86088 5.96724 6.07773 6.21746 6.26640 6.34640 6.52697 6.80267 6.88649 7.04601 7.17299 7.50825 7.62569 7.95785 7.97439 8.29212 8.50476 8.96027 9.20681 9.60910 11.08514 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.019712 B = 0.004090 C = 0.004001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.125307 B = 6844.253700 C = 6997.042467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.109 3.891 3 N -0.600 5.600 4 C 0.249 3.751 5 C -0.524 4.524 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.896 5.896 9 Si 0.898 3.102 10 H -0.276 1.276 11 H -0.287 1.287 12 H -0.278 1.278 13 C 0.510 3.490 14 O -0.522 6.522 15 C 0.026 3.974 16 N -0.491 5.491 17 C 0.016 3.984 18 C 0.053 3.947 19 H 0.120 0.880 20 C -0.128 4.128 21 C 0.102 3.898 22 N -0.625 5.625 23 C 0.092 3.908 24 C 0.487 3.513 25 O -0.526 6.526 26 H 0.061 0.939 27 H 0.049 0.951 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.082 0.918 31 H 0.031 0.969 32 H 0.043 0.957 33 H 0.263 0.737 34 H 0.093 0.907 35 H 0.066 0.934 36 H 0.086 0.914 37 H 0.064 0.936 38 H 0.043 0.957 39 H 0.099 0.901 40 H 0.092 0.908 41 H 0.080 0.920 42 H 0.073 0.927 43 H 0.081 0.919 44 H 0.060 0.940 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.890 -11.324 -19.191 22.469 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.016 4.016 3 N -0.333 5.333 4 C 0.129 3.871 5 C -0.563 4.563 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.535 5.535 9 Si 0.725 3.275 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.203 1.203 13 C 0.295 3.705 14 O -0.397 6.397 15 C -0.105 4.105 16 N -0.214 5.214 17 C -0.132 4.132 18 C -0.060 4.060 19 H 0.138 0.862 20 C -0.166 4.166 21 C -0.022 4.022 22 N -0.361 5.361 23 C -0.050 4.050 24 C 0.273 3.727 25 O -0.402 6.402 26 H 0.081 0.919 27 H 0.068 0.932 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.101 0.899 31 H 0.049 0.951 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.111 0.889 35 H 0.083 0.917 36 H 0.105 0.895 37 H 0.083 0.917 38 H 0.062 0.938 39 H 0.117 0.883 40 H 0.111 0.889 41 H 0.099 0.901 42 H 0.091 0.909 43 H 0.100 0.900 44 H 0.078 0.922 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.906 -10.257 -18.797 21.610 hybrid contribution 0.219 -0.831 0.155 0.873 sum -2.687 -11.088 -18.643 21.857 Atomic orbital electron populations 1.22221 0.96868 1.01329 1.02347 1.21367 0.93469 0.84424 1.02300 1.48244 1.64207 1.13181 1.07675 1.19232 0.96164 0.93609 0.78056 1.21400 0.96932 1.31831 1.06143 0.92563 1.24930 0.97775 0.94968 0.96419 1.69926 1.35696 1.33525 1.14332 0.86568 0.84939 0.78156 0.77799 1.20164 1.21230 1.20331 1.19998 0.78836 0.87122 0.84508 1.90652 1.44574 1.17723 1.86790 1.22247 1.01015 0.96055 0.91173 1.62012 1.47651 1.11252 1.00455 1.22597 0.92871 0.94081 1.03648 1.22684 0.93120 0.94678 0.95529 0.86187 1.22773 0.97507 0.93673 1.02623 1.22155 0.79306 0.99879 1.00838 1.48274 1.08074 1.11981 1.67735 1.21558 0.95381 0.87424 1.00658 1.22217 0.90849 0.83920 0.75721 1.90703 1.19313 1.79063 1.51106 0.91947 0.93155 0.92305 0.92311 0.89929 0.95139 0.93941 0.92724 0.88891 0.91659 0.89548 0.91683 0.93836 0.88272 0.88931 0.90123 0.90853 0.90043 0.92183 0.92016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.50 10.24 37.15 0.38 -2.12 16 2 C 0.11 1.83 5.93 -4.05 -0.02 1.81 16 3 N -0.60 -13.05 2.46 -175.07 -0.43 -13.48 16 4 C 0.25 6.61 5.16 -5.20 -0.03 6.59 16 5 C -0.52 -15.01 9.39 -34.44 -0.32 -15.33 16 6 H 0.06 1.60 7.81 -52.49 -0.41 1.19 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.90 -26.91 13.29 55.43 0.74 -26.18 16 9 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 13 C 0.51 11.02 7.42 -10.98 -0.08 10.94 16 14 O -0.52 -13.42 14.43 5.56 0.08 -13.34 16 15 C 0.03 0.43 2.94 -4.97 -0.01 0.42 16 16 N -0.49 -7.66 4.36 -236.34 -1.03 -8.70 16 17 C 0.02 0.25 9.02 60.07 0.54 0.79 16 18 C 0.05 0.62 3.00 -67.72 -0.20 0.41 16 19 H 0.12 1.23 8.00 -51.93 -0.42 0.81 16 20 C -0.13 -1.13 6.57 -25.10 -0.17 -1.29 16 21 C 0.10 0.70 7.35 -3.12 -0.02 0.67 16 22 N -0.62 -6.02 3.33 -180.29 -0.60 -6.62 16 23 C 0.09 0.70 11.14 59.85 0.67 1.37 16 24 C 0.49 6.23 6.24 -10.86 -0.07 6.17 16 25 O -0.53 -8.57 14.73 5.56 0.08 -8.48 16 26 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.05 0.76 7.22 -51.93 -0.37 0.38 16 28 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 29 H 0.06 0.84 6.44 -51.93 -0.33 0.51 16 30 H 0.08 1.42 8.07 -51.92 -0.42 1.00 16 31 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 32 H 0.04 1.28 7.42 -51.94 -0.39 0.89 16 33 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 34 H 0.09 1.37 5.31 -51.93 -0.28 1.10 16 35 H 0.07 1.10 6.05 -51.93 -0.31 0.79 16 36 H 0.09 1.60 6.46 -51.93 -0.34 1.26 16 37 H 0.06 0.88 8.05 -51.93 -0.42 0.46 16 38 H 0.04 0.71 6.28 -51.93 -0.33 0.38 16 39 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.09 0.96 6.24 -51.93 -0.32 0.63 16 41 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.08 0.74 7.53 -51.93 -0.39 0.35 16 44 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 LS Contribution 357.60 15.07 5.39 5.39 Total: -1.00 -35.69 357.60 -7.47 -43.16 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -7.24 Total: -0.82 kcal Atomic # 6 Polarization: 11.52 SS G_CDS: 0.56 Total: 12.08 kcal Atomic # 7 Polarization: -53.65 SS G_CDS: -1.33 Total: -54.97 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: 0.16 Total: -21.82 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.69 -7.47 -43.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352661278.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.622 kcal (2) G-P(sol) polarization free energy of solvation -35.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds