Wall clock time and date at job start Tue Mar 31 2020 03:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46501 * 109.47356 * 2 1 4 4 C 1.46496 * 120.00500 * 89.99828 * 3 2 1 5 5 C 1.50695 * 109.47167 * 89.99776 * 4 3 2 6 6 H 1.08000 * 119.99910 * 0.02562 * 5 4 3 7 7 C 1.37878 * 120.00365 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99536 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 120.00319 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.46989 * 60.00274 * 9 7 5 11 11 H 1.48504 * 109.47185 * 179.97438 * 9 7 5 12 12 H 1.48492 * 109.47381 * 300.00160 * 9 7 5 13 13 C 1.34777 * 119.99692 * 269.99838 * 3 2 1 14 14 O 1.21277 * 120.00375 * 180.02562 * 13 3 2 15 15 C 1.50704 * 119.99870 * 0.02562 * 13 3 2 16 16 N 1.46902 * 109.46967 * 180.02562 * 15 13 3 17 17 C 1.46901 * 110.99812 * 287.48729 * 16 15 13 18 18 C 1.46896 * 111.00160 * 163.53400 * 16 15 13 19 19 H 1.08999 * 110.43667 * 171.00785 * 18 16 15 20 20 C 1.54628 * 110.48707 * 293.69640 * 18 16 15 21 21 C 1.54482 * 101.76337 * 143.47511 * 20 18 16 22 22 N 1.46759 * 105.47523 * 334.58238 * 21 20 18 23 23 C 1.46500 * 124.34757 * 197.03595 * 22 21 20 24 24 C 1.34416 * 111.30035 * 17.02083 * 22 21 20 25 25 O 1.21280 * 124.94352 * 179.62687 * 24 22 21 26 26 H 1.09004 * 109.47114 * 300.00286 * 1 2 3 27 27 H 1.08999 * 109.47321 * 60.00547 * 1 2 3 28 28 H 1.09002 * 109.47792 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.46949 * 239.99285 * 2 1 3 30 30 H 1.09010 * 109.47153 * 119.99900 * 2 1 3 31 31 H 1.09004 * 109.46734 * 330.00183 * 4 3 2 32 32 H 1.08988 * 109.47309 * 210.00441 * 4 3 2 33 33 H 0.97002 * 120.00070 * 179.97438 * 8 7 5 34 34 H 1.09002 * 109.47261 * 299.99585 * 15 13 3 35 35 H 1.08994 * 109.47403 * 60.00205 * 15 13 3 36 36 H 1.09003 * 109.47504 * 59.99905 * 17 16 15 37 37 H 1.09001 * 109.47238 * 180.02562 * 17 16 15 38 38 H 1.09005 * 109.46990 * 300.00065 * 17 16 15 39 39 H 1.09000 * 110.96720 * 261.59190 * 20 18 16 40 40 H 1.09003 * 110.96956 * 25.35599 * 20 18 16 41 41 H 1.09005 * 110.24416 * 215.58374 * 21 20 18 42 42 H 1.09003 * 110.31866 * 93.62392 * 21 20 18 43 43 H 1.09000 * 109.46850 * 180.02562 * 23 22 21 44 44 H 1.09000 * 109.47212 * 300.00294 * 23 22 21 45 45 H 1.08993 * 109.47091 * 60.00847 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 1.2686 5 6 3.6857 1.8350 1.7037 6 1 4.3428 1.2308 1.0958 7 6 4.1491 2.3897 2.8779 8 7 3.3488 3.1251 3.6184 9 14 5.9135 2.0967 3.4168 10 1 6.8407 2.6210 2.3820 11 1 6.1610 2.7967 4.7029 12 1 6.1417 0.6401 3.5936 13 6 2.2430 2.0165 -1.1672 14 8 2.6477 3.1597 -1.1674 15 6 1.9912 1.3061 -2.4723 16 7 2.3102 2.2058 -3.5889 17 6 1.2962 3.2605 -3.7213 18 6 2.4569 1.4562 -4.8437 19 1 2.5351 2.1402 -5.6887 20 6 3.6922 0.5284 -4.7785 21 6 3.1975 -0.7099 -5.5584 22 7 1.7357 -0.6959 -5.4291 23 6 0.8713 -1.8483 -5.6955 24 6 1.2920 0.5100 -5.0345 25 8 0.1273 0.7975 -4.8565 26 1 -0.3633 0.5139 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3635 -1.0276 0.0005 29 1 1.8932 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8901 31 1 1.5817 1.6878 2.0283 32 1 2.0955 3.1410 1.1383 33 1 3.6746 3.5150 4.4447 34 1 2.6211 0.4184 -2.5302 35 1 0.9432 1.0125 -2.5299 36 1 1.2574 3.8447 -2.8019 37 1 1.5564 3.9121 -4.5555 38 1 0.3221 2.8070 -3.9050 39 1 4.5492 0.9847 -5.2740 40 1 3.9319 0.2698 -3.7471 41 1 3.6063 -1.6201 -5.1195 42 1 3.4842 -0.6359 -6.6075 43 1 -0.1686 -1.5696 -5.5247 44 1 0.9968 -2.1649 -6.7309 45 1 1.1423 -2.6674 -5.0296 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352661278.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:56 Heat of formation + Delta-G solvation = -72.205107 kcal Electronic energy + Delta-G solvation = -25671.770438 eV Core-core repulsion = 22110.008650 eV Total energy + Delta-G solvation = -3561.761788 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.99348 -40.59272 -37.68923 -37.39930 -36.74652 -34.89414 -32.76095 -31.67800 -30.33416 -28.40742 -28.30269 -27.58114 -25.22790 -24.45950 -23.79181 -22.29682 -20.54035 -19.85699 -18.68461 -18.34211 -17.82315 -17.38221 -17.01077 -16.84512 -16.48220 -16.06294 -15.62359 -15.27223 -15.13217 -14.82449 -14.69752 -14.35371 -14.25586 -13.87882 -13.72561 -13.57704 -13.37418 -13.28510 -13.14489 -13.00523 -12.88256 -12.70812 -12.66435 -12.51454 -12.33377 -12.16376 -11.93654 -11.84621 -11.70701 -11.40121 -10.62055 -10.54037 -9.72393 -9.45829 -9.24062 -8.19866 -6.34945 1.38316 1.42589 1.43466 1.50492 1.82680 2.05049 2.17244 2.42015 2.85021 3.09625 3.37288 3.57640 3.68975 3.91950 3.97673 4.06056 4.12696 4.20567 4.36630 4.39945 4.43991 4.50507 4.55795 4.65153 4.67888 4.74974 4.85258 4.88953 4.90881 5.01451 5.03298 5.10629 5.12609 5.20684 5.30300 5.52714 5.59017 5.71111 5.87253 5.91022 6.04963 6.08443 6.71865 6.79582 7.08389 7.30553 7.51118 8.87328 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.019712 B = 0.004090 C = 0.004001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1420.125307 B = 6844.253700 C = 6997.042467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.103 3.897 3 N -0.605 5.605 4 C 0.265 3.735 5 C -0.541 4.541 6 H 0.056 0.944 7 C 0.006 3.994 8 N -0.931 5.931 9 Si 0.970 3.030 10 H -0.276 1.276 11 H -0.280 1.280 12 H -0.258 1.258 13 C 0.501 3.499 14 O -0.573 6.573 15 C 0.049 3.951 16 N -0.507 5.507 17 C 0.025 3.975 18 C 0.048 3.952 19 H 0.136 0.864 20 C -0.123 4.123 21 C 0.104 3.896 22 N -0.620 5.620 23 C 0.087 3.913 24 C 0.478 3.522 25 O -0.572 6.572 26 H 0.042 0.958 27 H 0.044 0.956 28 H 0.096 0.904 29 H 0.092 0.908 30 H 0.079 0.921 31 H 0.020 0.980 32 H -0.006 1.006 33 H 0.267 0.733 34 H 0.118 0.882 35 H 0.066 0.934 36 H 0.050 0.950 37 H 0.086 0.914 38 H 0.036 0.964 39 H 0.121 0.879 40 H 0.078 0.922 41 H 0.103 0.897 42 H 0.101 0.899 43 H 0.060 0.940 44 H 0.084 0.916 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.082 -14.311 -21.114 25.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.019 4.019 3 N -0.338 5.338 4 C 0.143 3.857 5 C -0.579 4.579 6 H 0.074 0.926 7 C -0.192 4.192 8 N -0.571 5.571 9 Si 0.794 3.206 10 H -0.202 1.202 11 H -0.205 1.205 12 H -0.183 1.183 13 C 0.288 3.712 14 O -0.452 6.452 15 C -0.081 4.081 16 N -0.230 5.230 17 C -0.123 4.123 18 C -0.063 4.063 19 H 0.154 0.846 20 C -0.161 4.161 21 C -0.018 4.018 22 N -0.354 5.354 23 C -0.054 4.054 24 C 0.265 3.735 25 O -0.451 6.451 26 H 0.062 0.938 27 H 0.063 0.937 28 H 0.114 0.886 29 H 0.110 0.890 30 H 0.098 0.902 31 H 0.038 0.962 32 H 0.012 0.988 33 H 0.075 0.925 34 H 0.136 0.864 35 H 0.083 0.917 36 H 0.069 0.931 37 H 0.105 0.895 38 H 0.055 0.945 39 H 0.140 0.860 40 H 0.096 0.904 41 H 0.122 0.878 42 H 0.119 0.881 43 H 0.079 0.921 44 H 0.102 0.898 45 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -1.090 -13.330 -20.758 24.693 hybrid contribution -0.375 0.083 0.693 0.792 sum -1.465 -13.247 -20.065 24.088 Atomic orbital electron populations 1.22140 0.95203 1.03362 1.01147 1.21674 0.94802 0.81667 1.03756 1.48273 1.64223 1.15021 1.06254 1.18682 0.95495 0.91342 0.80137 1.21664 0.97669 1.32076 1.06503 0.92620 1.25893 1.02536 0.94414 0.96385 1.70062 1.37923 1.34289 1.14778 0.85436 0.78836 0.79065 0.77281 1.20187 1.20509 1.18279 1.20942 0.77521 0.86741 0.85959 1.90619 1.46858 1.20064 1.87680 1.21991 1.01373 0.96070 0.88697 1.61958 1.47291 1.11749 1.01993 1.22436 0.93005 0.94340 1.02535 1.22879 0.94359 0.95198 0.93896 0.84648 1.22823 0.96869 0.93915 1.02502 1.22389 0.77276 0.99739 1.02395 1.48425 1.09598 1.11335 1.65996 1.21722 0.94029 0.86982 1.02648 1.22311 0.90279 0.85104 0.75840 1.90682 1.20985 1.80034 1.53427 0.93850 0.93655 0.88564 0.88989 0.90206 0.96197 0.98787 0.92462 0.86406 0.91658 0.93135 0.89547 0.94515 0.86036 0.90371 0.87835 0.88072 0.92116 0.89789 0.90122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.59 10.24 71.98 0.74 -3.86 16 2 C 0.10 3.39 5.93 86.38 0.51 3.91 16 3 N -0.61 -27.08 2.46 -826.18 -2.03 -29.11 16 4 C 0.26 14.81 5.16 85.63 0.44 15.26 16 5 C -0.54 -31.69 9.39 25.60 0.24 -31.45 16 6 H 0.06 3.19 7.81 -2.91 -0.02 3.17 16 7 C 0.01 0.38 5.46 84.65 0.46 0.84 16 8 N -0.93 -57.40 13.29 21.45 0.28 -57.12 16 9 Si 0.97 45.21 29.54 68.60 2.03 47.24 16 10 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 11 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 12 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 13 C 0.50 22.31 7.42 87.66 0.65 22.96 16 14 O -0.57 -31.11 14.43 -3.02 -0.04 -31.15 16 15 C 0.05 1.62 2.94 85.56 0.25 1.87 16 16 N -0.51 -15.63 4.36 -901.64 -3.94 -19.57 16 17 C 0.02 0.81 9.02 127.69 1.15 1.96 16 18 C 0.05 1.04 3.00 44.91 0.13 1.17 16 19 H 0.14 2.45 8.00 -2.39 -0.02 2.43 16 20 C -0.12 -1.74 6.57 31.65 0.21 -1.53 16 21 C 0.10 0.94 7.35 86.83 0.64 1.58 16 22 N -0.62 -9.89 3.33 -842.91 -2.81 -12.70 16 23 C 0.09 1.06 11.14 127.77 1.42 2.48 16 24 C 0.48 11.39 6.24 87.90 0.55 11.94 16 25 O -0.57 -18.42 14.73 -3.03 -0.04 -18.46 16 26 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 27 H 0.04 1.34 7.22 -2.39 -0.02 1.32 16 28 H 0.10 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.09 2.40 6.44 -2.39 -0.02 2.39 16 30 H 0.08 2.67 8.07 -2.38 -0.02 2.65 16 31 H 0.02 1.14 8.07 -2.38 -0.02 1.12 16 32 H -0.01 -0.39 7.42 -2.39 -0.02 -0.41 16 33 H 0.27 15.43 8.31 -92.71 -0.77 14.66 16 34 H 0.12 3.23 5.31 -2.39 -0.01 3.22 16 35 H 0.07 2.18 6.05 -2.39 -0.01 2.17 16 36 H 0.05 2.00 6.46 -2.39 -0.02 1.98 16 37 H 0.09 2.36 8.05 -2.39 -0.02 2.34 16 38 H 0.04 1.24 6.28 -2.38 -0.01 1.22 16 39 H 0.12 1.20 8.14 -2.39 -0.02 1.18 16 40 H 0.08 1.37 6.24 -2.39 -0.01 1.35 16 41 H 0.10 0.57 8.14 -2.38 -0.02 0.55 16 42 H 0.10 0.47 8.14 -2.39 -0.02 0.45 16 43 H 0.06 1.02 7.53 -2.39 -0.02 1.00 16 44 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 45 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -82.63 357.60 1.82 -80.81 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: 0.97 Total: 12.93 kcal Atomic # 6 Polarization: 19.73 SS G_CDS: 7.40 Total: 27.13 kcal Atomic # 7 Polarization: -110.00 SS G_CDS: -8.49 Total: -118.49 kcal Atomic # 8 Polarization: -49.53 SS G_CDS: -0.09 Total: -49.61 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -82.63 1.82 -80.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352661278.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.600 kcal (2) G-P(sol) polarization free energy of solvation -82.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds