Wall clock time and date at job start Tue Mar 31 2020 03:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09002 * 109.47194 * 2 1 4 4 C 1.50694 * 109.47433 * 120.00543 * 2 1 3 5 5 O 1.21287 * 119.99977 * 97.19761 * 4 2 1 6 6 N 1.34775 * 120.00118 * 277.19422 * 4 2 1 7 7 C 1.46499 * 120.00122 * 0.02562 * 6 4 2 8 8 C 1.46502 * 120.00051 * 179.97438 * 6 4 2 9 9 C 1.50705 * 109.47124 * 90.00215 * 8 6 4 10 10 H 1.08004 * 119.99540 * 359.97438 * 9 8 6 11 11 C 1.37868 * 120.00352 * 180.02562 * 9 8 6 12 12 N 1.31517 * 119.99726 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 120.00285 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.47219 * 90.00112 * 13 11 9 15 15 H 1.48499 * 109.47009 * 209.99670 * 13 11 9 16 16 H 1.48493 * 109.47027 * 329.99886 * 13 11 9 17 17 N 1.46907 * 109.46883 * 240.00545 * 2 1 3 18 18 C 1.46905 * 110.99830 * 181.26328 * 17 2 1 19 19 C 1.46902 * 110.99548 * 57.31412 * 17 2 1 20 20 H 1.09004 * 110.43579 * 312.53734 * 19 17 2 21 21 C 1.54630 * 110.48294 * 189.99912 * 19 17 2 22 22 C 1.54480 * 101.76673 * 216.52402 * 21 19 17 23 23 N 1.46770 * 105.47228 * 25.41494 * 22 21 19 24 24 C 1.46497 * 124.34884 * 162.98542 * 23 22 21 25 25 C 1.34416 * 111.30043 * 342.98336 * 23 22 21 26 26 O 1.21281 * 124.94165 * 180.44253 * 25 23 22 27 27 H 1.08996 * 109.47522 * 59.99134 * 1 2 3 28 28 H 1.09002 * 109.47194 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46978 * 299.99285 * 1 2 3 30 30 H 1.08996 * 109.47184 * 89.99415 * 7 6 4 31 31 H 1.08998 * 109.47276 * 210.00350 * 7 6 4 32 32 H 1.09007 * 109.46974 * 329.99847 * 7 6 4 33 33 H 1.08996 * 109.46993 * 209.99638 * 8 6 4 34 34 H 1.08993 * 109.47367 * 330.00272 * 8 6 4 35 35 H 0.96999 * 120.00136 * 180.02562 * 12 11 9 36 36 H 1.08995 * 109.46660 * 66.09542 * 18 17 2 37 37 H 1.09001 * 109.46499 * 186.09395 * 18 17 2 38 38 H 1.09001 * 109.47239 * 306.09536 * 18 17 2 39 39 H 1.09004 * 110.96963 * 334.64084 * 21 19 17 40 40 H 1.08998 * 110.97272 * 98.40623 * 21 19 17 41 41 H 1.09000 * 110.24631 * 144.41046 * 22 21 19 42 42 H 1.08997 * 110.24506 * 266.41683 * 22 21 19 43 43 H 1.09000 * 109.47329 * 90.00047 * 24 23 22 44 44 H 1.09000 * 109.47170 * 210.00347 * 24 23 22 45 45 H 1.09007 * 109.47211 * 329.99687 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 8 2.3586 -1.8769 1.1663 6 7 2.1192 -0.0498 2.4018 7 6 1.7247 1.3590 2.4793 8 6 2.6071 -0.7407 3.5980 9 6 4.1036 -0.5889 3.6905 10 1 4.6378 -0.0338 2.9336 11 6 4.7908 -1.1597 4.7406 12 7 4.1403 -1.8361 5.6620 13 14 6.6459 -0.9722 4.8549 14 1 6.9730 0.2511 5.6307 15 1 7.2223 -2.1592 5.5361 16 1 7.2170 -0.8595 3.4888 17 7 2.0196 -0.6924 -1.1996 18 6 3.4878 -0.7383 -1.2185 19 6 1.4967 -0.0642 -2.4202 20 1 0.4232 0.1030 -2.3323 21 6 1.8087 -0.9400 -3.6558 22 6 2.0994 0.1278 -4.7336 23 7 2.5474 1.3156 -3.9970 24 6 3.2626 2.4422 -4.6017 25 6 2.2172 1.2371 -2.6964 26 8 2.4608 2.0861 -1.8654 27 1 -0.3634 0.5139 -0.8899 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5137 0.8900 30 1 0.6658 1.4265 2.7286 31 1 2.3120 1.8589 3.2494 32 1 1.9028 1.8396 1.5173 33 1 2.1425 -0.3064 4.4832 34 1 2.3523 -1.7986 3.5359 35 1 4.6237 -2.2374 6.4010 36 1 3.8424 -1.3613 -0.3975 37 1 3.8259 -1.1584 -2.1658 38 1 3.8843 0.2709 -1.1064 39 1 2.6842 -1.5651 -3.4799 40 1 0.9465 -1.5474 -3.9311 41 1 2.8852 -0.2182 -5.4051 42 1 1.1932 0.3524 -5.2961 43 1 2.5439 3.1834 -4.9513 44 1 3.9202 2.8953 -3.8599 45 1 3.8560 2.0860 -5.4439 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000352673900.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:46 Heat of formation + Delta-G solvation = -37.787923 kcal Electronic energy + Delta-G solvation = -25795.879974 eV Core-core repulsion = 22235.610627 eV Total energy + Delta-G solvation = -3560.269347 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.07699 -39.11135 -36.61191 -36.35825 -34.64258 -32.73847 -32.14858 -30.61505 -27.93081 -27.47220 -26.82457 -25.72960 -24.77788 -23.78173 -21.98278 -21.21514 -19.34752 -18.12927 -17.30603 -16.84644 -16.47641 -16.18588 -15.70761 -15.63960 -14.83764 -14.64699 -14.24274 -14.18809 -13.97642 -13.53917 -13.28150 -13.02832 -12.75009 -12.57849 -12.49986 -12.32261 -12.19589 -12.04889 -11.85438 -11.70732 -11.52491 -11.32579 -11.17265 -11.05214 -10.87067 -10.78063 -10.50380 -10.28163 -10.09487 -9.54998 -8.98120 -8.72685 -8.38347 -8.00573 -7.52748 -5.98885 -4.03203 2.40225 2.78312 3.33645 3.39426 3.42195 3.48867 3.72683 4.10016 4.26165 4.35948 4.50529 4.67330 4.76406 4.96173 5.02490 5.08917 5.19362 5.23827 5.34340 5.37645 5.43581 5.45716 5.56337 5.67266 5.69468 5.77267 5.84440 5.88041 5.98172 6.08493 6.23737 6.24500 6.39467 6.43501 6.84028 6.94403 7.04225 7.20027 7.51681 7.64128 7.98404 8.00416 8.30206 8.52780 8.97249 9.22616 9.61845 11.09128 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.020590 B = 0.004125 C = 0.003890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1359.562460 B = 6786.008976 C = 7197.106287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.050 3.950 3 H 0.084 0.916 4 C 0.512 3.488 5 O -0.526 6.526 6 N -0.601 5.601 7 C 0.080 3.920 8 C 0.246 3.754 9 C -0.524 4.524 10 H 0.056 0.944 11 C 0.061 3.939 12 N -0.895 5.895 13 Si 0.897 3.103 14 H -0.281 1.281 15 H -0.285 1.285 16 H -0.275 1.275 17 N -0.487 5.487 18 C 0.009 3.991 19 C 0.046 3.954 20 H 0.123 0.877 21 C -0.125 4.125 22 C 0.102 3.898 23 N -0.626 5.626 24 C 0.095 3.905 25 C 0.488 3.512 26 O -0.524 6.524 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.044 0.956 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.031 0.969 34 H 0.044 0.956 35 H 0.263 0.737 36 H 0.095 0.905 37 H 0.065 0.935 38 H 0.030 0.970 39 H 0.093 0.907 40 H 0.097 0.903 41 H 0.079 0.921 42 H 0.072 0.928 43 H 0.054 0.946 44 H 0.073 0.927 45 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.388 6.697 -22.049 24.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.062 4.062 3 H 0.102 0.898 4 C 0.298 3.702 5 O -0.402 6.402 6 N -0.334 5.334 7 C -0.064 4.064 8 C 0.127 3.873 9 C -0.562 4.562 10 H 0.074 0.926 11 C -0.141 4.141 12 N -0.535 5.535 13 Si 0.725 3.275 14 H -0.207 1.207 15 H -0.211 1.211 16 H -0.200 1.200 17 N -0.210 5.210 18 C -0.139 4.139 19 C -0.067 4.067 20 H 0.141 0.859 21 C -0.163 4.163 22 C -0.021 4.021 23 N -0.362 5.362 24 C -0.047 4.047 25 C 0.274 3.726 26 O -0.399 6.399 27 H 0.077 0.923 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.062 0.938 31 H 0.091 0.909 32 H 0.079 0.921 33 H 0.049 0.951 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.113 0.887 37 H 0.084 0.916 38 H 0.048 0.952 39 H 0.111 0.889 40 H 0.115 0.885 41 H 0.097 0.903 42 H 0.090 0.910 43 H 0.073 0.927 44 H 0.092 0.908 45 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.177 5.990 -21.432 23.382 hybrid contribution 1.439 1.127 0.001 1.828 sum -5.738 7.118 -21.431 23.300 Atomic orbital electron populations 1.21771 0.92701 1.03157 1.01965 1.21896 0.96840 0.97832 0.89594 0.89837 1.19983 0.79070 0.87265 0.83925 1.90646 1.48766 1.16371 1.84462 1.48134 1.63463 1.10925 1.10897 1.21715 0.99118 0.83298 1.02278 1.19269 0.94090 0.93650 0.80271 1.21442 0.92386 1.33712 1.08705 0.92584 1.24922 0.98585 0.94996 0.95576 1.69936 1.35814 1.35010 1.12703 0.86514 0.85364 0.77516 0.78132 1.20675 1.21085 1.19956 1.62128 1.10047 1.49701 0.99141 1.22656 0.86310 1.01162 1.03722 1.22784 1.01272 0.90373 0.92232 0.85936 1.22744 1.04437 0.96960 0.92123 1.22154 1.00181 0.84691 0.95080 1.48280 1.57645 1.20664 1.09651 1.21531 0.96323 0.88168 0.98662 1.22187 0.79298 0.89186 0.81924 1.90709 1.55894 1.44510 1.48766 0.92265 0.91113 0.91413 0.93763 0.90864 0.92150 0.95065 0.93807 0.92779 0.88670 0.91623 0.95182 0.88876 0.88474 0.90305 0.90951 0.92722 0.90776 0.91170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 8.87 37.15 0.33 -1.58 16 2 C 0.05 0.85 1.57 -68.87 -0.11 0.75 16 3 H 0.08 1.51 4.28 -51.93 -0.22 1.29 16 4 C 0.51 11.36 6.09 -10.99 -0.07 11.29 16 5 O -0.53 -13.69 14.64 5.55 0.08 -13.61 16 6 N -0.60 -13.62 2.86 -182.96 -0.52 -14.14 16 7 C 0.08 1.43 9.73 59.85 0.58 2.01 16 8 C 0.25 6.70 5.16 -5.19 -0.03 6.68 16 9 C -0.52 -15.36 9.39 -34.44 -0.32 -15.69 16 10 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 11 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 12 N -0.90 -27.19 13.29 55.43 0.74 -26.45 16 13 Si 0.90 22.46 29.54 -169.99 -5.02 17.44 16 14 H -0.28 -6.83 7.11 56.52 0.40 -6.42 16 15 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 16 H -0.27 -6.88 7.11 56.52 0.40 -6.47 16 17 N -0.49 -7.70 4.34 -228.30 -0.99 -8.69 16 18 C 0.01 0.15 8.25 60.07 0.50 0.65 16 19 C 0.05 0.54 2.78 -67.72 -0.19 0.36 16 20 H 0.12 1.28 5.71 -51.93 -0.30 0.99 16 21 C -0.12 -1.03 6.63 -25.10 -0.17 -1.19 16 22 C 0.10 0.68 7.35 -3.12 -0.02 0.66 16 23 N -0.63 -6.26 3.33 -180.28 -0.60 -6.86 16 24 C 0.10 0.77 10.96 59.85 0.66 1.43 16 25 C 0.49 6.54 6.16 -10.86 -0.07 6.47 16 26 O -0.52 -9.02 14.90 5.56 0.08 -8.93 16 27 H 0.06 0.67 6.11 -51.93 -0.32 0.35 16 28 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.07 0.89 7.32 -51.93 -0.38 0.51 16 30 H 0.04 0.67 7.84 -51.93 -0.41 0.26 16 31 H 0.07 1.33 8.07 -51.93 -0.42 0.91 16 32 H 0.06 0.99 5.89 -51.92 -0.31 0.69 16 33 H 0.03 0.86 8.07 -51.93 -0.42 0.44 16 34 H 0.04 1.33 7.42 -51.93 -0.39 0.94 16 35 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 36 H 0.09 1.96 6.28 -51.93 -0.33 1.64 16 37 H 0.07 0.92 6.10 -51.93 -0.32 0.60 16 38 H 0.03 0.54 6.80 -51.93 -0.35 0.19 16 39 H 0.09 0.85 6.17 -51.93 -0.32 0.53 16 40 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 43 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.07 0.72 7.93 -51.93 -0.41 0.31 16 45 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 351.58 15.07 5.30 5.30 Total: -1.00 -36.39 351.58 -6.90 -43.29 By element: Atomic # 1 Polarization: 6.11 SS G_CDS: -6.96 Total: -0.86 kcal Atomic # 6 Polarization: 12.52 SS G_CDS: 1.00 Total: 13.52 kcal Atomic # 7 Polarization: -54.77 SS G_CDS: -1.38 Total: -56.15 kcal Atomic # 8 Polarization: -22.71 SS G_CDS: 0.16 Total: -22.54 kcal Atomic # 14 Polarization: 22.46 SS G_CDS: -5.02 Total: 17.44 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -36.39 -6.90 -43.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352673900.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.502 kcal (2) G-P(sol) polarization free energy of solvation -36.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds