Wall clock time and date at job start Tue Mar 31 2020 03:16:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53007 * 1
3 3 H 1.09004 * 109.47163 * 2 1
4 4 C 1.50699 * 109.47515 * 120.00532 * 2 1 3
5 5 O 1.21280 * 120.00147 * 107.42128 * 4 2 1
6 6 N 1.34780 * 119.99659 * 287.43098 * 4 2 1
7 7 C 1.46925 * 120.62924 * 185.01574 * 6 4 2
8 8 C 1.53621 * 108.54650 * 126.36348 * 7 6 4
9 9 C 1.53045 * 109.23834 * 54.85645 * 8 7 6
10 10 C 1.53039 * 109.53792 * 298.50834 * 9 8 7
11 11 H 1.09001 * 109.50150 * 301.41676 * 10 9 8
12 12 C 1.50703 * 109.49828 * 181.31612 * 10 9 8
13 13 N 1.34776 * 119.99428 * 60.16614 * 12 10 9
14 14 O 1.21276 * 120.00285 * 240.16478 * 12 10 9
15 15 C 1.46931 * 120.63038 * 5.29131 * 6 4 2
16 16 N 1.46907 * 109.47126 * 240.00501 * 2 1 3
17 17 C 1.46895 * 110.99735 * 306.04527 * 16 2 1
18 18 C 1.46905 * 110.99838 * 69.99770 * 16 2 1
19 19 C 1.50699 * 109.46758 * 170.00414 * 18 16 2
20 20 H 1.08000 * 120.00354 * 359.97438 * 19 18 16
21 21 C 1.37881 * 119.99815 * 180.02562 * 19 18 16
22 22 N 1.31515 * 120.00088 * 359.97438 * 21 19 18
23 23 Si 1.86798 * 119.99730 * 179.97438 * 21 19 18
24 24 H 1.48498 * 109.47387 * 89.99640 * 23 21 19
25 25 H 1.48505 * 109.46650 * 209.99295 * 23 21 19
26 26 H 1.48493 * 109.47513 * 329.99460 * 23 21 19
27 27 H 1.09001 * 109.46924 * 66.29501 * 1 2 3
28 28 H 1.09003 * 109.46795 * 186.29135 * 1 2 3
29 29 H 1.08995 * 109.46793 * 306.29110 * 1 2 3
30 30 H 1.08998 * 109.58580 * 246.19998 * 7 6 4
31 31 H 1.08998 * 109.58751 * 6.62373 * 7 6 4
32 32 H 1.08998 * 109.63265 * 294.86695 * 8 7 6
33 33 H 1.08991 * 109.43564 * 174.72035 * 8 7 6
34 34 H 1.09001 * 109.45892 * 178.49404 * 9 8 7
35 35 H 1.08994 * 109.45192 * 58.52328 * 9 8 7
36 36 H 0.96994 * 120.00494 * 0.02562 * 13 12 10
37 37 H 0.97002 * 119.99224 * 179.97438 * 13 12 10
38 38 H 1.08993 * 109.58778 * 353.37146 * 15 6 4
39 39 H 1.08997 * 109.58340 * 113.65938 * 15 6 4
40 40 H 1.08997 * 109.47685 * 59.99872 * 17 16 2
41 41 H 1.08999 * 109.47555 * 179.97438 * 17 16 2
42 42 H 1.08998 * 109.47671 * 300.00008 * 17 16 2
43 43 H 1.09003 * 109.46947 * 290.00234 * 18 16 2
44 44 H 1.08996 * 109.47208 * 50.00209 * 18 16 2
45 45 H 0.96999 * 120.00092 * 180.02562 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0325 -0.7105 1.2304
5 8 2.5311 -1.8118 1.1335
6 7 1.9275 -0.1221 2.4384
7 6 2.5101 -0.7520 3.6310
8 6 3.4297 0.2664 4.3217
9 6 2.6399 1.5453 4.6092
10 6 2.1524 2.1529 3.2919
11 1 3.0079 2.3669 2.6512
12 6 1.4024 3.4293 3.5737
13 7 2.0239 4.4537 4.1908
14 8 0.2398 3.5347 3.2452
15 6 1.2230 1.1586 2.5886
16 7 2.0198 -0.6924 -1.1995
17 6 1.4344 -2.0353 -1.3080
18 6 1.7529 0.0974 -2.4091
19 6 2.4774 -0.5161 -3.5795
20 1 3.0764 -1.4036 -3.4389
21 6 2.3762 0.0564 -4.8298
22 7 1.6472 1.1375 -5.0010
23 14 3.2748 -0.7036 -6.2804
24 1 2.3953 -1.7023 -6.9394
25 1 3.6321 0.3597 -7.2535
26 1 4.5111 -1.3724 -5.8017
27 1 -0.3633 0.4132 -0.9410
28 1 -0.3633 -1.0215 0.1126
29 1 -0.3633 0.6082 0.8283
30 1 1.7135 -1.0504 4.3127
31 1 3.0885 -1.6276 3.3362
32 1 4.2732 0.4981 3.6714
33 1 3.7964 -0.1530 5.2585
34 1 3.2817 2.2607 5.1234
35 1 1.7824 1.3086 5.2391
36 1 2.9539 4.3696 4.4532
37 1 1.5413 5.2754 4.3719
38 1 0.9521 1.5440 1.6057
39 1 0.3224 1.0124 3.1848
40 1 0.3491 -1.9548 -1.3695
41 1 1.8133 -2.5256 -2.2047
42 1 1.7059 -2.6221 -0.4304
43 1 0.6814 0.1055 -2.6087
44 1 2.1025 1.1191 -2.2604
45 1 1.5757 1.5400 -5.8806
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000358775505.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:16:33
Heat of formation + Delta-G solvation = -65.307992 kcal
Electronic energy + Delta-G solvation = -25390.052413 eV
Core-core repulsion = 21828.589707 eV
Total energy + Delta-G solvation = -3561.462707 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 297.184 amu
Computer time = 0.47 seconds
Orbital eigenvalues (eV)
-40.71728 -39.53834 -37.43739 -36.12914 -34.17114 -33.06840 -32.54432 -31.54348
-29.81747 -26.97923 -26.00425 -25.08505 -24.56482 -23.42540 -21.75163 -20.47726
-19.89248 -18.73165 -17.78404 -17.03701 -16.75552 -16.33094 -15.66661 -15.29868
-15.09918 -14.70785 -14.61594 -14.21396 -14.13650 -13.90072 -13.53863 -13.38204
-12.95822 -12.82031 -12.76746 -12.19016 -11.94610 -11.67458 -11.55894 -11.27156
-11.20407 -11.03688 -10.96076 -10.86482 -10.71014 -10.61228 -10.32914 -10.11294
-9.99444 -9.91784 -9.28424 -8.92404 -8.59701 -8.38886 -7.12125 -5.98559
-3.98809 2.35148 2.86057 2.97834 3.34468 3.35904 3.41572 3.47417
4.27020 4.41715 4.45693 4.47911 4.72487 4.87566 4.92631 5.02656
5.08146 5.20722 5.33329 5.37297 5.48299 5.51926 5.53316 5.57545
5.61259 5.72397 5.82666 5.98193 6.03147 6.12348 6.41138 6.44081
6.45566 6.58276 6.64143 6.98429 7.04094 7.31255 7.40171 7.49001
7.86202 7.95890 8.11459 8.26596 8.50049 8.61408 9.09409 9.64956
11.12443
Molecular weight = 297.18amu
Principal moments of inertia in cm(-1)
A = 0.018756 B = 0.003827 C = 0.003468
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1492.493175 B = 7314.859371 C = 8070.797531
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.185 4.185
2 C 0.065 3.935
3 H 0.096 0.904
4 C 0.530 3.470
5 O -0.519 6.519
6 N -0.621 5.621
7 C 0.109 3.891
8 C -0.133 4.133
9 C -0.108 4.108
10 C -0.128 4.128
11 H 0.107 0.893
12 C 0.526 3.474
13 N -0.855 5.855
14 O -0.538 6.538
15 C 0.125 3.875
16 N -0.518 5.518
17 C 0.024 3.976
18 C 0.193 3.807
19 C -0.504 4.504
20 H 0.064 0.936
21 C 0.055 3.945
22 N -0.900 5.900
23 Si 0.898 3.102
24 H -0.281 1.281
25 H -0.287 1.287
26 H -0.273 1.273
27 H 0.076 0.924
28 H 0.060 0.940
29 H 0.060 0.940
30 H 0.064 0.936
31 H 0.094 0.906
32 H 0.072 0.928
33 H 0.078 0.922
34 H 0.069 0.931
35 H 0.070 0.930
36 H 0.401 0.599
37 H 0.402 0.598
38 H 0.100 0.900
39 H 0.077 0.923
40 H 0.009 0.991
41 H 0.070 0.930
42 H 0.074 0.926
43 H -0.004 1.004
44 H 0.028 0.972
45 H 0.260 0.740
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 1.410 4.526 23.087 23.569
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.244 4.244
2 C -0.048 4.048
3 H 0.114 0.886
4 C 0.318 3.682
5 O -0.393 6.393
6 N -0.356 5.356
7 C -0.013 4.013
8 C -0.171 4.171
9 C -0.146 4.146
10 C -0.151 4.151
11 H 0.125 0.875
12 C 0.310 3.690
13 N -0.419 5.419
14 O -0.414 6.414
15 C 0.001 3.999
16 N -0.242 5.242
17 C -0.124 4.124
18 C 0.068 3.932
19 C -0.543 4.543
20 H 0.082 0.918
21 C -0.146 4.146
22 N -0.540 5.540
23 Si 0.726 3.274
24 H -0.208 1.208
25 H -0.213 1.213
26 H -0.197 1.197
27 H 0.095 0.905
28 H 0.079 0.921
29 H 0.079 0.921
30 H 0.082 0.918
31 H 0.112 0.888
32 H 0.091 0.909
33 H 0.096 0.904
34 H 0.088 0.912
35 H 0.089 0.911
36 H 0.230 0.770
37 H 0.232 0.768
38 H 0.119 0.881
39 H 0.096 0.904
40 H 0.027 0.973
41 H 0.088 0.912
42 H 0.092 0.908
43 H 0.013 0.987
44 H 0.046 0.954
45 H 0.070 0.930
Dipole moment (debyes) X Y Z Total
from point charges 1.406 3.849 22.607 22.975
hybrid contribution -0.149 0.406 -0.689 0.813
sum 1.257 4.255 21.918 22.363
Atomic orbital electron populations
1.22513 0.96009 1.02531 1.03387 1.21617 0.93805 0.98601 0.90784
0.88638 1.20933 0.77615 0.85905 0.83721 1.90583 1.43698 1.19825
1.85201 1.48156 1.57235 1.22566 1.07662 1.21628 0.96731 0.96514
0.86445 1.21994 0.98615 0.95307 1.01189 1.21512 1.00449 0.97605
0.95039 1.21766 1.00436 0.93114 0.99759 0.87485 1.20481 0.87035
0.85089 0.76356 1.43867 1.16756 1.18008 1.63270 1.90780 1.16915
1.82390 1.51291 1.21598 0.93466 0.82230 1.02605 1.62119 1.57303
1.03114 1.01677 1.22512 0.95497 0.91395 1.02983 1.19790 0.95121
0.93024 0.85293 1.21169 1.29113 1.11968 0.92004 0.91757 1.24973
0.95676 0.95070 0.98890 1.69958 1.40287 1.20556 1.23205 0.86497
0.80145 0.78738 0.82060 1.20759 1.21313 1.19742 0.90548 0.92088
0.92095 0.91808 0.88751 0.90946 0.90355 0.91230 0.91081 0.77033
0.76770 0.88148 0.90441 0.97269 0.91158 0.90767 0.98674 0.95424
0.92993
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.19 -3.12 7.96 37.16 0.30 -2.82 16
2 C 0.06 1.21 1.87 -68.86 -0.13 1.08 16
3 H 0.10 1.72 7.05 -51.93 -0.37 1.36 16
4 C 0.53 9.17 6.88 -10.98 -0.08 9.09 16
5 O -0.52 -10.57 13.28 5.56 0.07 -10.50 16
6 N -0.62 -8.08 2.97 -172.50 -0.51 -8.59 16
7 C 0.11 1.15 6.45 -3.49 -0.02 1.12 16
8 C -0.13 -0.99 6.10 -26.39 -0.16 -1.15 16
9 C -0.11 -0.69 5.07 -26.69 -0.14 -0.83 16
10 C -0.13 -1.12 2.68 -91.65 -0.25 -1.37 16
11 H 0.11 0.91 8.14 -51.93 -0.42 0.49 16
12 C 0.53 5.04 7.43 -10.98 -0.08 4.96 16
13 N -0.86 -4.80 8.76 31.22 0.27 -4.52 16
14 O -0.54 -7.51 16.76 5.56 0.09 -7.42 16
15 C 0.12 1.43 4.02 -3.70 -0.01 1.41 16
16 N -0.52 -11.93 4.54 -237.72 -1.08 -13.01 16
17 C 0.02 0.53 8.50 60.06 0.51 1.04 16
18 C 0.19 5.10 4.30 -4.97 -0.02 5.08 16
19 C -0.50 -14.55 8.46 -34.44 -0.29 -14.84 16
20 H 0.06 1.87 7.12 -52.49 -0.37 1.50 16
21 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16
22 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16
23 Si 0.90 22.11 29.54 -169.99 -5.02 17.09 16
24 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16
25 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16
26 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16
27 H 0.08 1.42 6.66 -51.93 -0.35 1.07 16
28 H 0.06 1.03 6.71 -51.93 -0.35 0.68 16
29 H 0.06 0.87 5.91 -51.93 -0.31 0.56 16
30 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16
31 H 0.09 1.16 7.04 -51.93 -0.37 0.79 16
32 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16
33 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16
34 H 0.07 0.29 7.54 -51.93 -0.39 -0.10 16
35 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16
36 H 0.40 1.12 8.24 -40.82 -0.34 0.78 16
37 H 0.40 1.95 8.93 -40.82 -0.36 1.59 16
38 H 0.10 1.29 4.54 -51.93 -0.24 1.06 16
39 H 0.08 0.87 7.96 -51.93 -0.41 0.46 16
40 H 0.01 0.19 6.36 -51.93 -0.33 -0.14 16
41 H 0.07 1.64 6.76 -51.93 -0.35 1.29 16
42 H 0.07 1.60 5.46 -51.93 -0.28 1.31 16
43 H 0.00 -0.12 6.92 -51.93 -0.36 -0.48 16
44 H 0.03 0.77 7.93 -51.93 -0.41 0.36 16
45 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16
LS Contribution 345.75 15.07 5.21 5.21
Total: -1.00 -35.43 345.75 -7.52 -42.96
By element:
Atomic # 1 Polarization: 7.60 SS G_CDS: -6.83 Total: 0.76 kcal
Atomic # 6 Polarization: 4.74 SS G_CDS: -0.47 Total: 4.27 kcal
Atomic # 7 Polarization: -51.79 SS G_CDS: -0.58 Total: -52.38 kcal
Atomic # 8 Polarization: -18.08 SS G_CDS: 0.17 Total: -17.91 kcal
Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal
Total LS contribution 5.21 Total: 5.21 kcal
Total: -35.43 -7.52 -42.96 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000358775505.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -22.351 kcal
(2) G-P(sol) polarization free energy of solvation -35.432 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.784 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.524 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.957 kcal
(6) G-S(sol) free energy of system = (1) + (5) -65.308 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.47 seconds