Wall clock time and date at job start Tue Mar 31 2020 03:16:33
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53007 * 1
3 3 H 1.09004 * 109.47163 * 2 1
4 4 C 1.50699 * 109.47515 * 120.00532 * 2 1 3
5 5 O 1.21280 * 120.00147 * 107.42128 * 4 2 1
6 6 N 1.34780 * 119.99659 * 287.43098 * 4 2 1
7 7 C 1.46925 * 120.62924 * 185.01574 * 6 4 2
8 8 C 1.53621 * 108.54650 * 126.36348 * 7 6 4
9 9 C 1.53045 * 109.23834 * 54.85645 * 8 7 6
10 10 C 1.53039 * 109.53792 * 298.50834 * 9 8 7
11 11 H 1.09001 * 109.50150 * 301.41676 * 10 9 8
12 12 C 1.50703 * 109.49828 * 181.31612 * 10 9 8
13 13 N 1.34776 * 119.99428 * 60.16614 * 12 10 9
14 14 O 1.21276 * 120.00285 * 240.16478 * 12 10 9
15 15 C 1.46931 * 120.63038 * 5.29131 * 6 4 2
16 16 N 1.46907 * 109.47126 * 240.00501 * 2 1 3
17 17 C 1.46895 * 110.99735 * 306.04527 * 16 2 1
18 18 C 1.46905 * 110.99838 * 69.99770 * 16 2 1
19 19 C 1.50699 * 109.46758 * 170.00414 * 18 16 2
20 20 H 1.08000 * 120.00354 * 359.97438 * 19 18 16
21 21 C 1.37881 * 119.99815 * 180.02562 * 19 18 16
22 22 N 1.31515 * 120.00088 * 359.97438 * 21 19 18
23 23 Si 1.86798 * 119.99730 * 179.97438 * 21 19 18
24 24 H 1.48498 * 109.47387 * 89.99640 * 23 21 19
25 25 H 1.48505 * 109.46650 * 209.99295 * 23 21 19
26 26 H 1.48493 * 109.47513 * 329.99460 * 23 21 19
27 27 H 1.09001 * 109.46924 * 66.29501 * 1 2 3
28 28 H 1.09003 * 109.46795 * 186.29135 * 1 2 3
29 29 H 1.08995 * 109.46793 * 306.29110 * 1 2 3
30 30 H 1.08998 * 109.58580 * 246.19998 * 7 6 4
31 31 H 1.08998 * 109.58751 * 6.62373 * 7 6 4
32 32 H 1.08998 * 109.63265 * 294.86695 * 8 7 6
33 33 H 1.08991 * 109.43564 * 174.72035 * 8 7 6
34 34 H 1.09001 * 109.45892 * 178.49404 * 9 8 7
35 35 H 1.08994 * 109.45192 * 58.52328 * 9 8 7
36 36 H 0.96994 * 120.00494 * 0.02562 * 13 12 10
37 37 H 0.97002 * 119.99224 * 179.97438 * 13 12 10
38 38 H 1.08993 * 109.58778 * 353.37146 * 15 6 4
39 39 H 1.08997 * 109.58340 * 113.65938 * 15 6 4
40 40 H 1.08997 * 109.47685 * 59.99872 * 17 16 2
41 41 H 1.08999 * 109.47555 * 179.97438 * 17 16 2
42 42 H 1.08998 * 109.47671 * 300.00008 * 17 16 2
43 43 H 1.09003 * 109.46947 * 290.00234 * 18 16 2
44 44 H 1.08996 * 109.47208 * 50.00209 * 18 16 2
45 45 H 0.96999 * 120.00092 * 180.02562 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0325 -0.7105 1.2304
5 8 2.5311 -1.8118 1.1335
6 7 1.9275 -0.1221 2.4384
7 6 2.5101 -0.7520 3.6310
8 6 3.4297 0.2664 4.3217
9 6 2.6399 1.5453 4.6092
10 6 2.1524 2.1529 3.2919
11 1 3.0079 2.3669 2.6512
12 6 1.4024 3.4293 3.5737
13 7 2.0239 4.4537 4.1908
14 8 0.2398 3.5347 3.2452
15 6 1.2230 1.1586 2.5886
16 7 2.0198 -0.6924 -1.1995
17 6 1.4344 -2.0353 -1.3080
18 6 1.7529 0.0974 -2.4091
19 6 2.4774 -0.5161 -3.5795
20 1 3.0764 -1.4036 -3.4389
21 6 2.3762 0.0564 -4.8298
22 7 1.6472 1.1375 -5.0010
23 14 3.2748 -0.7036 -6.2804
24 1 2.3953 -1.7023 -6.9394
25 1 3.6321 0.3597 -7.2535
26 1 4.5111 -1.3724 -5.8017
27 1 -0.3633 0.4132 -0.9410
28 1 -0.3633 -1.0215 0.1126
29 1 -0.3633 0.6082 0.8283
30 1 1.7135 -1.0504 4.3127
31 1 3.0885 -1.6276 3.3362
32 1 4.2732 0.4981 3.6714
33 1 3.7964 -0.1530 5.2585
34 1 3.2817 2.2607 5.1234
35 1 1.7824 1.3086 5.2391
36 1 2.9539 4.3696 4.4532
37 1 1.5413 5.2754 4.3719
38 1 0.9521 1.5440 1.6057
39 1 0.3224 1.0124 3.1848
40 1 0.3491 -1.9548 -1.3695
41 1 1.8133 -2.5256 -2.2047
42 1 1.7059 -2.6221 -0.4304
43 1 0.6814 0.1055 -2.6087
44 1 2.1025 1.1191 -2.2604
45 1 1.5757 1.5400 -5.8806
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000358775505.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:16:33
Heat of formation + Delta-G solvation = -93.847937 kcal
Electronic energy + Delta-G solvation = -25391.289998 eV
Core-core repulsion = 21828.589707 eV
Total energy + Delta-G solvation = -3562.700292 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 297.184 amu
Computer time = 0.54 seconds
Orbital eigenvalues (eV)
-41.77707 -40.59275 -38.65722 -37.61774 -35.00607 -34.79893 -33.81413 -32.49308
-31.28633 -29.02271 -27.30084 -26.63453 -25.41331 -24.97016 -22.93828 -21.60693
-20.94086 -19.93667 -18.64528 -18.49240 -18.10132 -17.60156 -16.87181 -16.57459
-16.34405 -16.12224 -15.81310 -15.56671 -15.39601 -15.03416 -14.82538 -14.54883
-14.21342 -14.18655 -14.00982 -13.69635 -13.41139 -13.09085 -12.88223 -12.72287
-12.62322 -12.56111 -12.41148 -12.19041 -12.03930 -11.99722 -11.88923 -11.63838
-11.37717 -10.90460 -10.62624 -10.61139 -10.46938 -9.68382 -8.97436 -8.20517
-6.29825 1.40656 1.41881 1.53875 1.57230 1.62366 1.84132 2.40901
2.63358 3.11802 3.32423 3.47486 3.58519 3.75228 3.88846 4.02341
4.05729 4.10211 4.24911 4.25820 4.46559 4.55433 4.58197 4.60438
4.65222 4.76928 4.81374 4.87806 4.92489 5.00510 5.02269 5.10086
5.17074 5.24586 5.31278 5.36638 5.58432 5.64869 5.92194 6.02062
6.25102 6.30694 6.46141 6.59899 6.85041 7.18986 7.35682 7.39298
8.90414
Molecular weight = 297.18amu
Principal moments of inertia in cm(-1)
A = 0.018756 B = 0.003827 C = 0.003468
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1492.493175 B = 7314.859371 C = 8070.797531
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.173 4.173
2 C 0.061 3.939
3 H 0.098 0.902
4 C 0.531 3.469
5 O -0.556 6.556
6 N -0.607 5.607
7 C 0.102 3.898
8 C -0.124 4.124
9 C -0.102 4.102
10 C -0.123 4.123
11 H 0.111 0.889
12 C 0.526 3.474
13 N -0.833 5.833
14 O -0.589 6.589
15 C 0.120 3.880
16 N -0.532 5.532
17 C 0.035 3.965
18 C 0.211 3.789
19 C -0.526 4.526
20 H 0.057 0.943
21 C 0.006 3.994
22 N -0.931 5.931
23 Si 0.968 3.032
24 H -0.273 1.273
25 H -0.278 1.278
26 H -0.268 1.268
27 H 0.054 0.946
28 H 0.060 0.940
29 H 0.088 0.912
30 H 0.082 0.918
31 H 0.074 0.926
32 H 0.064 0.936
33 H 0.106 0.894
34 H 0.103 0.897
35 H 0.076 0.924
36 H 0.418 0.582
37 H 0.408 0.592
38 H 0.082 0.918
39 H 0.083 0.917
40 H 0.015 0.985
41 H 0.051 0.949
42 H 0.082 0.918
43 H -0.026 1.026
44 H 0.007 0.993
45 H 0.265 0.735
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.474 5.023 25.090 25.707
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.232 4.232
2 C -0.052 4.052
3 H 0.115 0.885
4 C 0.319 3.681
5 O -0.434 6.434
6 N -0.341 5.341
7 C -0.020 4.020
8 C -0.162 4.162
9 C -0.139 4.139
10 C -0.145 4.145
11 H 0.129 0.871
12 C 0.311 3.689
13 N -0.397 5.397
14 O -0.469 6.469
15 C -0.003 4.003
16 N -0.256 5.256
17 C -0.113 4.113
18 C 0.085 3.915
19 C -0.565 4.565
20 H 0.075 0.925
21 C -0.192 4.192
22 N -0.572 5.572
23 Si 0.792 3.208
24 H -0.198 1.198
25 H -0.204 1.204
26 H -0.193 1.193
27 H 0.073 0.927
28 H 0.079 0.921
29 H 0.107 0.893
30 H 0.100 0.900
31 H 0.093 0.907
32 H 0.083 0.917
33 H 0.124 0.876
34 H 0.121 0.879
35 H 0.095 0.905
36 H 0.250 0.750
37 H 0.240 0.760
38 H 0.100 0.900
39 H 0.101 0.899
40 H 0.033 0.967
41 H 0.070 0.930
42 H 0.100 0.900
43 H -0.008 1.008
44 H 0.025 0.975
45 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges 2.503 4.392 24.689 25.201
hybrid contribution -0.488 0.324 -1.193 1.329
sum 2.016 4.716 23.496 24.049
Atomic orbital electron populations
1.22380 0.94623 1.02853 1.03343 1.21678 0.94989 0.98481 0.90013
0.88461 1.20526 0.77580 0.85431 0.84531 1.90559 1.45714 1.21214
1.85880 1.48091 1.56157 1.22756 1.07079 1.21915 0.97688 0.96849
0.85536 1.21959 0.97558 0.94885 1.01819 1.21542 1.01069 0.97625
0.93691 1.21699 0.99561 0.92243 1.01004 0.87098 1.20571 0.86379
0.85849 0.76117 1.43688 1.17509 1.17173 1.61354 1.90767 1.19089
1.83309 1.53718 1.21672 0.94407 0.82022 1.02225 1.61979 1.58352
1.03379 1.01875 1.22391 0.95650 0.90895 1.02368 1.19414 0.93290
0.92253 0.86549 1.21443 1.29595 1.12078 0.93355 0.92498 1.25846
0.96290 0.95399 1.01713 1.70070 1.41269 1.21675 1.24157 0.85408
0.78936 0.78100 0.78331 1.19830 1.20353 1.19261 0.92676 0.92125
0.89338 0.89974 0.90713 0.91736 0.87556 0.87905 0.90523 0.75029
0.75995 0.89990 0.89876 0.96687 0.93007 0.89974 1.00844 0.97518
0.92604
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -5.95 7.96 71.98 0.57 -5.38 16
2 C 0.06 2.32 1.87 44.17 0.08 2.40 16
3 H 0.10 3.63 7.05 -2.39 -0.02 3.62 16
4 C 0.53 18.49 6.88 87.66 0.60 19.10 16
5 O -0.56 -22.94 13.28 -3.03 -0.04 -22.98 16
6 N -0.61 -15.26 2.97 -818.06 -2.43 -17.69 16
7 C 0.10 1.94 6.45 86.51 0.56 2.50 16
8 C -0.12 -1.44 6.10 30.82 0.19 -1.25 16
9 C -0.10 -0.92 5.07 30.62 0.16 -0.76 16
10 C -0.12 -1.87 2.68 -11.46 -0.03 -1.90 16
11 H 0.11 1.64 8.14 -2.39 -0.02 1.63 16
12 C 0.53 9.07 7.43 87.66 0.65 9.72 16
13 N -0.83 -6.99 8.76 -173.54 -1.52 -8.51 16
14 O -0.59 -16.01 16.76 -3.02 -0.05 -16.06 16
15 C 0.12 2.61 4.02 86.36 0.35 2.96 16
16 N -0.53 -25.35 4.54 -906.02 -4.11 -29.46 16
17 C 0.03 1.58 8.50 127.69 1.09 2.67 16
18 C 0.21 11.65 4.30 85.56 0.37 12.02 16
19 C -0.53 -31.21 8.46 25.60 0.22 -31.00 16
20 H 0.06 3.39 7.12 -2.91 -0.02 3.37 16
21 C 0.01 0.33 5.46 84.66 0.46 0.80 16
22 N -0.93 -56.73 13.29 21.45 0.28 -56.45 16
23 Si 0.97 45.63 29.54 68.60 2.03 47.66 16
24 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16
25 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16
26 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16
27 H 0.05 2.13 6.66 -2.39 -0.02 2.11 16
28 H 0.06 2.07 6.71 -2.39 -0.02 2.05 16
29 H 0.09 2.52 5.91 -2.39 -0.01 2.50 16
30 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16
31 H 0.07 1.77 7.04 -2.39 -0.02 1.76 16
32 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16
33 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16
34 H 0.10 0.32 7.54 -2.39 -0.02 0.30 16
35 H 0.08 0.69 8.14 -2.39 -0.02 0.67 16
36 H 0.42 0.76 8.24 -92.71 -0.76 -0.01 16
37 H 0.41 2.94 8.93 -92.71 -0.83 2.12 16
38 H 0.08 2.10 4.54 -2.39 -0.01 2.09 16
39 H 0.08 1.76 7.96 -2.39 -0.02 1.74 16
40 H 0.01 0.64 6.36 -2.39 -0.02 0.63 16
41 H 0.05 2.49 6.76 -2.39 -0.02 2.48 16
42 H 0.08 3.62 5.46 -2.39 -0.01 3.60 16
43 H -0.03 -1.53 6.92 -2.39 -0.02 -1.54 16
44 H 0.01 0.39 7.93 -2.39 -0.02 0.37 16
45 H 0.27 15.14 8.31 -92.71 -0.77 14.36 16
Total: -1.00 -79.08 345.75 -1.15 -80.23
By element:
Atomic # 1 Polarization: 11.97 SS G_CDS: -0.57 Total: 11.40 kcal
Atomic # 6 Polarization: 6.61 SS G_CDS: 5.26 Total: 11.87 kcal
Atomic # 7 Polarization: -104.34 SS G_CDS: -7.77 Total: -112.11 kcal
Atomic # 8 Polarization: -38.96 SS G_CDS: -0.09 Total: -39.05 kcal
Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal
Total: -79.08 -1.15 -80.23 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000358775505.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -13.619 kcal
(2) G-P(sol) polarization free energy of solvation -79.084 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.703 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.145 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.229 kcal
(6) G-S(sol) free energy of system = (1) + (5) -93.848 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.55 seconds