Wall clock time and date at job start Tue Mar 31 2020 03:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08997 * 109.47236 * 2 1 4 4 N 1.46502 * 109.46982 * 120.00564 * 2 1 3 5 5 C 1.34782 * 119.99336 * 275.00099 * 4 2 1 6 6 O 1.21583 * 120.00553 * 359.97438 * 5 4 2 7 7 N 1.34783 * 119.99508 * 180.02562 * 5 4 2 8 8 C 1.46498 * 119.99654 * 179.97438 * 7 5 4 9 9 C 1.53005 * 109.46941 * 179.97438 * 8 7 5 10 10 C 1.53001 * 109.47123 * 179.97438 * 9 8 7 11 11 C 1.50695 * 109.47093 * 180.02562 * 10 9 8 12 12 H 1.07994 * 120.00035 * 359.97438 * 11 10 9 13 13 C 1.37875 * 119.99946 * 180.02562 * 11 10 9 14 14 N 1.31517 * 120.00066 * 359.97438 * 13 11 10 15 15 Si 1.86797 * 120.00077 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47047 * 0.02562 * 15 13 11 17 17 H 1.48499 * 109.47229 * 119.99851 * 15 13 11 18 18 H 1.48504 * 109.47424 * 240.00152 * 15 13 11 19 19 C 1.50699 * 109.46906 * 240.00027 * 2 1 3 20 20 O 1.21286 * 119.99986 * 240.00328 * 19 2 1 21 21 N 1.34775 * 120.00328 * 60.00412 * 19 2 1 22 22 C 1.47018 * 125.65103 * 179.97438 * 21 19 2 23 23 C 1.54325 * 107.40412 * 180.94532 * 22 21 19 24 24 C 1.55552 * 102.75696 * 22.23822 * 23 22 21 25 25 C 1.47430 * 125.64364 * 359.95398 * 21 19 2 26 26 H 1.09002 * 109.47517 * 299.99878 * 1 2 3 27 27 H 1.08999 * 109.47037 * 59.99896 * 1 2 3 28 28 H 1.09001 * 109.47729 * 180.02562 * 1 2 3 29 29 H 0.96995 * 120.00459 * 94.99460 * 4 2 1 30 30 H 0.96995 * 120.00288 * 359.97438 * 7 5 4 31 31 H 1.08997 * 109.47063 * 299.99189 * 8 7 5 32 32 H 1.08995 * 109.47798 * 59.99350 * 8 7 5 33 33 H 1.08997 * 109.46870 * 299.99663 * 9 8 7 34 34 H 1.09000 * 109.46882 * 59.99979 * 9 8 7 35 35 H 1.09006 * 109.46912 * 300.00266 * 10 9 8 36 36 H 1.09002 * 109.46871 * 59.99588 * 10 9 8 37 37 H 0.97000 * 120.00331 * 179.97438 * 14 13 11 38 38 H 1.09002 * 109.88241 * 300.44061 * 22 21 19 39 39 H 1.09000 * 109.88049 * 61.45190 * 22 21 19 40 40 H 1.08993 * 110.72531 * 140.63023 * 23 22 21 41 41 H 1.09000 * 110.72094 * 263.91129 * 23 22 21 42 42 H 1.08997 * 110.96565 * 206.40316 * 24 23 22 43 43 H 1.09000 * 111.02984 * 82.56372 * 24 23 22 44 44 H 1.08997 * 110.36526 * 274.74791 * 25 21 19 45 45 H 1.08992 * 110.36633 * 36.96256 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 2.1469 -0.0184 2.3571 6 8 1.8582 1.1614 2.4117 7 7 2.5967 -0.6537 3.4575 8 6 2.7370 0.0773 4.7193 9 6 3.2613 -0.8691 5.8013 10 6 3.4085 -0.1056 7.1190 11 6 3.9254 -1.0375 8.1844 12 1 4.1283 -2.0710 7.9458 13 6 4.1385 -0.5709 9.4642 14 7 3.8910 0.6876 9.7550 15 14 4.7786 -1.7262 10.7851 16 1 4.9760 -3.0793 10.2060 17 1 6.0734 -1.2165 11.3035 18 1 3.7957 -1.8013 11.8959 19 6 2.0323 -0.7104 -1.2305 20 8 2.7295 -1.6966 -1.1192 21 7 1.7068 -0.2499 -2.4546 22 6 2.1266 -0.8429 -3.7327 23 6 1.5390 0.0300 -4.8616 24 6 1.2937 1.3916 -4.1507 25 6 0.8703 0.9316 -2.7336 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 2.2489 -1.6319 1.1526 30 1 2.8274 -1.5948 3.4139 31 1 3.4382 0.9011 4.5859 32 1 1.7666 0.4714 5.0209 33 1 2.5598 -1.6926 5.9346 34 1 4.2317 -1.2634 5.4999 35 1 4.1101 0.7179 6.9853 36 1 2.4382 0.2892 7.4205 37 1 4.0405 1.0159 10.6554 38 1 3.2146 -0.8505 -3.7982 39 1 1.7434 -1.8601 -3.8131 40 1 2.2552 0.1413 -5.6757 41 1 0.6016 -0.3903 -5.2259 42 1 0.4918 1.9468 -4.6373 43 1 2.2085 1.9831 -4.1120 44 1 -0.1853 0.6601 -2.7227 45 1 1.0669 1.7165 -2.0035 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358989280.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:07 Heat of formation + Delta-G solvation = -77.690596 kcal Electronic energy + Delta-G solvation = -23551.133608 eV Core-core repulsion = 19989.133951 eV Total energy + Delta-G solvation = -3561.999657 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.83692 -39.60724 -37.82840 -35.74581 -34.78178 -33.32452 -32.47854 -31.32873 -30.26342 -29.21232 -26.60147 -25.45285 -23.50494 -22.63144 -21.73178 -20.77147 -20.33150 -19.88410 -18.47271 -17.21715 -16.83570 -16.54735 -16.11175 -15.72809 -15.40384 -14.80932 -14.45160 -14.26799 -14.12305 -14.09960 -13.88355 -13.78528 -13.46274 -12.97702 -12.65447 -12.40231 -12.26079 -12.00125 -11.84777 -11.76991 -11.69484 -11.62390 -11.27518 -10.89823 -10.69177 -10.54336 -10.19121 -10.11741 -9.82651 -9.41955 -9.28270 -9.12236 -9.08306 -8.59800 -8.34910 -5.99468 -4.02216 2.19500 2.29213 2.93878 3.31894 3.36102 3.39316 3.43253 3.85153 3.99887 4.27379 4.34392 4.41492 4.48407 4.69838 4.77753 4.80232 4.86419 5.04896 5.18424 5.23679 5.32722 5.35407 5.36362 5.38945 5.50147 5.61026 5.73523 5.79523 5.85382 5.88998 6.21988 6.34810 6.56326 6.66477 6.84350 6.99459 7.05774 7.11224 7.67110 7.68831 7.79859 7.99870 8.17045 8.41045 8.74832 9.04771 9.61834 11.11861 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.046662 B = 0.002054 C = 0.002007 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 599.919176 B =13626.249048 C =13947.110196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.152 3.848 3 H 0.114 0.886 4 N -0.736 5.736 5 C 0.705 3.295 6 O -0.594 6.594 7 N -0.739 5.739 8 C 0.136 3.864 9 C -0.121 4.121 10 C 0.024 3.976 11 C -0.521 4.521 12 H 0.056 0.944 13 C 0.056 3.944 14 N -0.894 5.894 15 Si 0.893 3.107 16 H -0.273 1.273 17 H -0.284 1.284 18 H -0.284 1.284 19 C 0.528 3.472 20 O -0.533 6.533 21 N -0.617 5.617 22 C 0.106 3.894 23 C -0.132 4.132 24 C -0.135 4.135 25 C 0.092 3.908 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.061 0.939 29 H 0.404 0.596 30 H 0.395 0.605 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.019 0.981 36 H 0.019 0.981 37 H 0.260 0.740 38 H 0.069 0.931 39 H 0.069 0.931 40 H 0.084 0.916 41 H 0.078 0.922 42 H 0.087 0.913 43 H 0.079 0.921 44 H 0.077 0.923 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.243 -0.658 -31.509 32.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.042 3.958 3 H 0.131 0.869 4 N -0.394 5.394 5 C 0.405 3.595 6 O -0.473 6.473 7 N -0.393 5.393 8 C 0.012 3.988 9 C -0.159 4.159 10 C -0.014 4.014 11 C -0.559 4.559 12 H 0.074 0.926 13 C -0.146 4.146 14 N -0.533 5.533 15 Si 0.721 3.279 16 H -0.198 1.198 17 H -0.210 1.210 18 H -0.210 1.210 19 C 0.316 3.684 20 O -0.409 6.409 21 N -0.352 5.352 22 C -0.016 4.016 23 C -0.170 4.170 24 C -0.173 4.173 25 C -0.031 4.031 26 H 0.097 0.903 27 H 0.091 0.909 28 H 0.080 0.920 29 H 0.240 0.760 30 H 0.229 0.771 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.038 0.962 36 H 0.038 0.962 37 H 0.070 0.930 38 H 0.087 0.913 39 H 0.087 0.913 40 H 0.102 0.898 41 H 0.096 0.904 42 H 0.105 0.895 43 H 0.097 0.903 44 H 0.095 0.905 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -8.088 -0.003 -31.128 32.162 hybrid contribution 0.577 -1.432 0.726 1.706 sum -7.512 -1.435 -30.403 31.350 Atomic orbital electron populations 1.22303 0.93111 1.03145 1.03943 1.20409 0.95376 0.97648 0.82362 0.86875 1.44828 1.72455 1.14298 1.07851 1.15899 0.78422 0.85006 0.80167 1.90904 1.57468 1.14254 1.84672 1.45363 1.70202 1.14027 1.09677 1.21523 1.01281 0.95227 0.80720 1.21899 0.99748 0.98220 0.96048 1.19036 0.97504 0.95497 0.89376 1.21251 1.43717 0.96414 0.94525 0.92582 1.25036 0.95686 0.95118 0.98717 1.69979 1.48911 1.14145 1.20262 0.86523 0.78532 0.81062 0.81788 1.19770 1.21028 1.21023 1.20443 0.79934 0.84471 0.83586 1.90716 1.37888 1.26395 1.85934 1.48392 1.51684 1.29916 1.05206 1.21943 1.00134 0.97400 0.82169 1.22728 1.01951 0.95172 0.97167 1.22876 1.02749 0.97200 0.94468 1.22570 0.95129 0.87684 0.97700 0.90252 0.90853 0.91951 0.75987 0.77114 0.91919 0.91892 0.92724 0.92716 0.96228 0.96224 0.93013 0.91251 0.91268 0.89764 0.90365 0.89453 0.90270 0.90522 0.89813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.46 9.29 37.16 0.35 -1.11 16 2 C 0.15 1.65 2.33 -69.08 -0.16 1.49 16 3 H 0.11 1.29 7.28 -51.93 -0.38 0.92 16 4 N -0.74 -9.37 4.96 -59.81 -0.30 -9.67 16 5 C 0.71 11.26 8.53 -86.91 -0.74 10.52 16 6 O -0.59 -11.47 16.01 5.29 0.08 -11.39 16 7 N -0.74 -11.38 5.56 -65.22 -0.36 -11.74 16 8 C 0.14 2.48 5.67 -4.04 -0.02 2.46 16 9 C -0.12 -2.43 5.27 -26.73 -0.14 -2.57 16 10 C 0.02 0.61 4.97 -27.88 -0.14 0.47 16 11 C -0.52 -14.74 9.11 -34.44 -0.31 -15.05 16 12 H 0.06 1.53 7.74 -52.49 -0.41 1.13 16 13 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 14 N -0.89 -27.06 13.29 55.43 0.74 -26.32 16 15 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 16 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 17 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 19 C 0.53 5.79 7.28 -10.99 -0.08 5.71 16 20 O -0.53 -7.59 16.16 5.55 0.09 -7.50 16 21 N -0.62 -4.92 3.32 -170.53 -0.57 -5.48 16 22 C 0.11 0.70 6.86 -3.07 -0.02 0.68 16 23 C -0.13 -0.47 6.98 -24.68 -0.17 -0.64 16 24 C -0.13 -0.45 7.09 -24.38 -0.17 -0.62 16 25 C 0.09 0.45 5.14 -2.54 -0.01 0.44 16 26 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.07 0.45 4.99 -51.93 -0.26 0.19 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.40 4.75 7.80 -40.82 -0.32 4.43 16 30 H 0.40 5.08 8.49 -40.82 -0.35 4.73 16 31 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 32 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 33 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 38 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 41 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 42 H 0.09 0.16 8.14 -51.93 -0.42 -0.26 16 43 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 44 H 0.08 0.28 7.07 -51.93 -0.37 -0.08 16 45 H 0.08 0.40 7.35 -51.93 -0.38 0.01 16 LS Contribution 367.17 15.07 5.53 5.53 Total: -1.00 -35.19 367.17 -9.04 -44.24 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -7.51 Total: 2.34 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: -1.73 Total: 3.27 kcal Atomic # 7 Polarization: -52.73 SS G_CDS: -0.49 Total: -53.22 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: 0.17 Total: -18.89 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -35.19 -9.04 -44.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358989280.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.453 kcal (2) G-P(sol) polarization free energy of solvation -35.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds