Wall clock time and date at job start Tue Mar 31 2020 03:16:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.46967 * 2 1 4 4 N 1.46499 * 109.46998 * 240.00016 * 2 1 3 5 5 C 1.34782 * 119.99656 * 84.99814 * 4 2 1 6 6 O 1.21585 * 120.00118 * 0.02562 * 5 4 2 7 7 N 1.34776 * 119.99744 * 180.02562 * 5 4 2 8 8 C 1.46503 * 119.99827 * 180.02562 * 7 5 4 9 9 C 1.53000 * 109.46836 * 179.97438 * 8 7 5 10 10 C 1.53003 * 109.46922 * 180.02562 * 9 8 7 11 11 C 1.50706 * 109.47051 * 179.97438 * 10 9 8 12 12 H 1.07994 * 120.00021 * 0.02562 * 11 10 9 13 13 C 1.37876 * 119.99621 * 180.02562 * 11 10 9 14 14 N 1.31517 * 120.00103 * 359.97438 * 13 11 10 15 15 Si 1.86806 * 119.99743 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.46917 * 89.99813 * 15 13 11 17 17 H 1.48504 * 109.46932 * 209.99727 * 15 13 11 18 18 H 1.48499 * 109.46873 * 329.99706 * 15 13 11 19 19 C 1.50707 * 109.47135 * 120.00361 * 2 1 3 20 20 O 1.21279 * 119.99868 * 93.20764 * 19 2 1 21 21 N 1.34776 * 119.99409 * 273.20735 * 19 2 1 22 22 C 1.47016 * 125.65281 * 4.62524 * 21 19 2 23 23 C 1.54319 * 107.27734 * 180.97098 * 22 21 19 24 24 C 1.55160 * 102.86162 * 22.52251 * 23 22 21 25 25 C 1.47424 * 125.64122 * 184.93362 * 21 19 2 26 26 H 1.09002 * 109.47540 * 182.63568 * 1 2 3 27 27 H 1.09007 * 109.47174 * 302.63171 * 1 2 3 28 28 H 1.08993 * 109.47703 * 62.63089 * 1 2 3 29 29 H 0.96997 * 120.00721 * 265.00123 * 4 2 1 30 30 H 0.96998 * 120.00117 * 359.97438 * 7 5 4 31 31 H 1.08994 * 109.47496 * 300.00042 * 8 7 5 32 32 H 1.09000 * 109.46712 * 60.00220 * 8 7 5 33 33 H 1.09003 * 109.47187 * 299.99675 * 9 8 7 34 34 H 1.08998 * 109.47720 * 60.00297 * 9 8 7 35 35 H 1.09003 * 109.47049 * 300.00128 * 10 9 8 36 36 H 1.08997 * 109.47384 * 60.00121 * 10 9 8 37 37 H 0.97003 * 119.99364 * 180.02562 * 14 13 11 38 38 H 1.09005 * 109.87949 * 300.51260 * 22 21 19 39 39 H 1.08997 * 109.88547 * 61.67776 * 22 21 19 40 40 H 1.09003 * 110.92068 * 264.11407 * 23 22 21 41 41 H 1.08993 * 110.59397 * 140.78406 * 23 22 21 42 42 H 1.08997 * 111.00617 * 206.22944 * 24 23 22 43 43 H 1.09001 * 111.03469 * 82.39590 * 24 23 22 44 44 H 1.09003 * 110.37207 * 274.67257 * 25 21 19 45 45 H 1.09003 * 110.37091 * 36.88522 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6906 -1.1962 5 6 2.1469 -0.0182 -2.3572 6 8 1.8582 1.1616 -2.4116 7 7 2.5957 -0.6536 -3.4577 8 6 2.7361 0.0774 -4.7196 9 6 3.2603 -0.8689 -5.8015 10 6 3.4075 -0.1053 -7.1192 11 6 3.9245 -1.0372 -8.1848 12 1 4.1273 -2.0707 -7.9462 13 6 4.1385 -0.5701 -9.4643 14 7 3.8910 0.6884 -9.7549 15 14 4.7786 -1.7254 -10.7853 16 1 3.6332 -2.3682 -11.4781 17 1 5.5832 -0.9560 -11.7682 18 1 5.6284 -2.7703 -10.1597 19 6 2.0324 -0.7105 1.2305 20 8 2.2899 -1.8947 1.1842 21 7 2.1954 -0.0298 2.3822 22 6 1.8332 1.3776 2.6044 23 6 2.2228 1.7275 4.0560 24 6 3.3058 0.6672 4.3881 25 6 2.7724 -0.5715 3.6260 26 1 -0.3634 -1.0266 0.0473 27 1 -0.3634 0.5542 0.8655 28 1 -0.3634 0.4724 -0.9125 29 1 2.2490 -1.6317 -1.1527 30 1 2.8264 -1.5948 -3.4142 31 1 1.7658 0.4722 -5.0207 32 1 3.4378 0.9007 -4.5863 33 1 4.2308 -1.2632 -5.5002 34 1 2.5589 -1.6925 -5.9349 35 1 2.4372 0.2895 -7.4207 36 1 4.1091 0.7181 -6.9856 37 1 4.0413 1.0168 -10.6552 38 1 2.3786 2.0151 1.9084 39 1 0.7599 1.5102 2.4685 40 1 1.3671 1.6268 4.7237 41 1 2.6387 2.7335 4.1095 42 1 3.3505 0.4769 5.4604 43 1 4.2806 0.9708 4.0064 44 1 2.0043 -1.0759 4.2124 45 1 3.5872 -1.2589 3.3984 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358989282.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:09 Heat of formation + Delta-G solvation = -81.114032 kcal Electronic energy + Delta-G solvation = -23558.711071 eV Core-core repulsion = 19996.562963 eV Total energy + Delta-G solvation = -3562.148108 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.80501 -39.61867 -37.86325 -35.73467 -34.75851 -33.32550 -32.38981 -31.37044 -30.20161 -29.36699 -26.60981 -25.37527 -23.54189 -22.65362 -21.68923 -20.77999 -20.33442 -19.77295 -18.51909 -17.14075 -16.97721 -16.63089 -16.14359 -15.53969 -15.24929 -15.00001 -14.52666 -14.32008 -14.12308 -14.04163 -13.82739 -13.75181 -13.22450 -13.13471 -12.61943 -12.48829 -12.25962 -11.97552 -11.85998 -11.78059 -11.74398 -11.63798 -11.27664 -10.88567 -10.69728 -10.57483 -10.20446 -10.13303 -9.83166 -9.42409 -9.29116 -9.11692 -9.10284 -8.61601 -8.35053 -5.99819 -4.02647 2.10502 2.35266 2.94838 3.32489 3.34557 3.38718 3.41875 3.86402 4.02588 4.28132 4.37460 4.40145 4.47792 4.71325 4.80220 4.84784 4.88110 5.08816 5.20052 5.27019 5.31428 5.35208 5.35940 5.44532 5.50516 5.61136 5.72542 5.81160 5.84249 5.89896 6.20820 6.33632 6.54882 6.65392 6.82819 7.00106 7.04711 7.09476 7.66250 7.67729 7.79155 7.99329 8.15036 8.40414 8.72924 9.04048 9.61346 11.11449 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.036347 B = 0.002101 C = 0.002078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.166420 B =13321.076325 C =13468.515464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.152 3.848 3 H 0.108 0.892 4 N -0.738 5.738 5 C 0.705 3.295 6 O -0.594 6.594 7 N -0.739 5.739 8 C 0.136 3.864 9 C -0.121 4.121 10 C 0.024 3.976 11 C -0.521 4.521 12 H 0.055 0.945 13 C 0.056 3.944 14 N -0.894 5.894 15 Si 0.893 3.107 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.274 1.274 19 C 0.530 3.470 20 O -0.534 6.534 21 N -0.617 5.617 22 C 0.092 3.908 23 C -0.131 4.131 24 C -0.135 4.135 25 C 0.105 3.895 26 H 0.064 0.936 27 H 0.067 0.933 28 H 0.079 0.921 29 H 0.404 0.596 30 H 0.395 0.605 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.019 0.981 36 H 0.019 0.981 37 H 0.261 0.739 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.079 0.921 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.078 0.922 44 H 0.069 0.931 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.063 0.510 30.991 31.406 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.042 3.958 3 H 0.126 0.874 4 N -0.397 5.397 5 C 0.405 3.595 6 O -0.472 6.472 7 N -0.393 5.393 8 C 0.012 3.988 9 C -0.159 4.159 10 C -0.014 4.014 11 C -0.560 4.560 12 H 0.074 0.926 13 C -0.145 4.145 14 N -0.533 5.533 15 Si 0.721 3.279 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.199 1.199 19 C 0.318 3.682 20 O -0.410 6.410 21 N -0.353 5.353 22 C -0.030 4.030 23 C -0.169 4.169 24 C -0.173 4.173 25 C -0.018 4.018 26 H 0.083 0.917 27 H 0.086 0.914 28 H 0.098 0.902 29 H 0.240 0.760 30 H 0.229 0.771 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.038 0.962 36 H 0.038 0.962 37 H 0.070 0.930 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.097 0.903 41 H 0.104 0.896 42 H 0.104 0.896 43 H 0.096 0.904 44 H 0.087 0.913 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.187 1.062 30.651 31.105 hybrid contribution 0.549 -1.397 -0.729 1.669 sum -4.638 -0.336 29.923 30.282 Atomic orbital electron populations 1.22119 0.92790 1.03082 1.03639 1.20468 0.95626 0.97453 0.82256 0.87396 1.44887 1.72508 1.14296 1.07978 1.15907 0.78449 0.85033 0.80154 1.90906 1.57387 1.14260 1.84646 1.45373 1.70247 1.14008 1.09650 1.21527 1.01300 0.95217 0.80708 1.21900 0.99733 0.98232 0.96054 1.19030 0.97498 0.95483 0.89357 1.21211 1.43847 0.96366 0.94554 0.92642 1.25036 0.95682 0.95112 0.98706 1.69971 1.48859 1.14123 1.20335 0.86578 0.78900 0.80800 0.81610 1.20676 1.21226 1.19908 1.20422 0.77336 0.86929 0.83529 1.90707 1.50997 1.15075 1.84260 1.48446 1.62519 1.12782 1.11515 1.22201 1.00952 0.81993 0.97891 1.22644 0.99343 0.99977 0.94975 1.22811 0.99036 0.94613 1.00828 1.22261 0.98265 0.96657 0.84572 0.91740 0.91413 0.90166 0.75975 0.77114 0.91863 0.91920 0.92730 0.92708 0.96231 0.96235 0.92955 0.90643 0.90752 0.90275 0.89618 0.89561 0.90355 0.91250 0.90259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.50 9.47 37.16 0.35 -1.14 16 2 C 0.15 1.67 2.47 -69.08 -0.17 1.50 16 3 H 0.11 1.22 6.63 -51.93 -0.34 0.87 16 4 N -0.74 -9.35 5.06 -59.81 -0.30 -9.65 16 5 C 0.70 11.14 8.53 -86.91 -0.74 10.40 16 6 O -0.59 -11.36 16.01 5.29 0.08 -11.28 16 7 N -0.74 -11.25 5.56 -65.22 -0.36 -11.61 16 8 C 0.14 2.46 5.67 -4.04 -0.02 2.43 16 9 C -0.12 -2.42 5.27 -26.73 -0.14 -2.56 16 10 C 0.02 0.62 4.97 -27.88 -0.14 0.48 16 11 C -0.52 -14.71 9.11 -34.44 -0.31 -15.02 16 12 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 13 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 14 N -0.89 -26.99 13.29 55.43 0.74 -26.25 16 15 Si 0.89 21.69 29.54 -169.99 -5.02 16.67 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 18 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 19 C 0.53 5.86 7.04 -10.98 -0.08 5.78 16 20 O -0.53 -7.48 16.33 5.56 0.09 -7.39 16 21 N -0.62 -5.13 3.33 -170.52 -0.57 -5.70 16 22 C 0.09 0.51 6.29 -3.07 -0.02 0.49 16 23 C -0.13 -0.46 6.95 -24.90 -0.17 -0.64 16 24 C -0.13 -0.55 7.08 -24.58 -0.17 -0.73 16 25 C 0.10 0.70 6.89 -2.53 -0.02 0.69 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.07 0.48 7.31 -51.93 -0.38 0.10 16 28 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.40 4.73 7.82 -40.82 -0.32 4.41 16 30 H 0.40 5.01 8.49 -40.82 -0.35 4.66 16 31 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 32 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 34 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 38 H 0.08 0.43 7.68 -51.93 -0.40 0.03 16 39 H 0.07 0.34 7.31 -51.93 -0.38 -0.04 16 40 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 41 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 42 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 43 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.08 0.62 8.08 -51.93 -0.42 0.20 16 LS Contribution 370.84 15.07 5.59 5.59 Total: -1.00 -34.79 370.84 -9.11 -43.90 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -7.62 Total: 2.52 kcal Atomic # 6 Polarization: 4.93 SS G_CDS: -1.73 Total: 3.20 kcal Atomic # 7 Polarization: -52.72 SS G_CDS: -0.50 Total: -53.22 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: 0.18 Total: -18.66 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -34.79 -9.11 -43.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358989282.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.215 kcal (2) G-P(sol) polarization free energy of solvation -34.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds