Wall clock time and date at job start Tue Mar 31 2020 03:53:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21281 * 119.99913 * 2 1 4 4 N 1.34773 * 120.00018 * 180.02562 * 2 1 3 5 5 C 1.47087 * 120.88024 * 354.61221 * 4 2 1 6 6 C 1.53244 * 108.51940 * 231.20656 * 5 4 2 7 7 N 1.46906 * 109.33851 * 306.16973 * 6 5 4 8 8 C 1.46894 * 110.99642 * 187.25291 * 7 6 5 9 9 C 1.53007 * 109.47014 * 170.00210 * 8 7 6 10 10 N 1.46496 * 109.47242 * 180.02562 * 9 8 7 11 11 C 1.34774 * 119.99902 * 179.97438 * 10 9 8 12 12 O 1.21278 * 120.00084 * 359.97438 * 11 10 9 13 13 C 1.50709 * 119.99951 * 179.72463 * 11 10 9 14 14 C 1.52998 * 109.47222 * 179.97438 * 13 11 10 15 15 C 1.50695 * 109.47077 * 180.02562 * 14 13 11 16 16 H 1.08000 * 120.00390 * 359.97438 * 15 14 13 17 17 C 1.37884 * 119.99971 * 179.97438 * 15 14 13 18 18 N 1.31517 * 119.99558 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00072 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46814 * 90.00314 * 19 17 15 21 21 H 1.48494 * 109.47461 * 210.00175 * 19 17 15 22 22 H 1.48501 * 109.47161 * 330.00519 * 19 17 15 23 23 C 1.46896 * 111.26987 * 63.10594 * 7 6 5 24 24 C 1.47078 * 120.88281 * 174.63489 * 4 2 1 25 25 H 1.09000 * 109.47430 * 274.71414 * 1 2 3 26 26 H 1.09006 * 109.47203 * 34.71845 * 1 2 3 27 27 H 1.09000 * 109.47051 * 154.71912 * 1 2 3 28 28 H 1.08997 * 109.62537 * 111.49751 * 5 4 2 29 29 H 1.08991 * 109.62846 * 350.91306 * 5 4 2 30 30 H 1.08993 * 109.49014 * 186.21020 * 6 5 4 31 31 H 1.09001 * 109.49140 * 66.12720 * 6 5 4 32 32 H 1.09000 * 109.47449 * 50.00141 * 8 7 6 33 33 H 1.09001 * 109.47320 * 289.99907 * 8 7 6 34 34 H 1.09000 * 109.47068 * 59.99698 * 9 8 7 35 35 H 1.09001 * 109.46829 * 299.99998 * 9 8 7 36 36 H 0.97003 * 120.00042 * 359.97438 * 10 9 8 37 37 H 1.08999 * 109.46890 * 300.00197 * 13 11 10 38 38 H 1.09003 * 109.46768 * 59.99916 * 13 11 10 39 39 H 1.09002 * 109.46963 * 300.00547 * 14 13 11 40 40 H 1.09005 * 109.46693 * 59.99766 * 14 13 11 41 41 H 0.97000 * 119.99297 * 180.02562 * 18 17 15 42 42 H 1.09008 * 109.49439 * 56.85006 * 23 7 6 43 43 H 1.08993 * 109.49831 * 176.93611 * 23 7 6 44 44 H 1.09008 * 109.62893 * 248.50420 * 24 4 2 45 45 H 1.08999 * 109.62452 * 9.08253 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4700 -2.4494 0.1174 6 6 2.1203 -3.2651 1.2400 7 7 3.5633 -3.3758 0.9876 8 6 4.1963 -4.2923 1.9453 9 6 5.6339 -4.5766 1.5053 10 7 6.2650 -5.4911 2.4600 11 6 7.5405 -5.8846 2.2738 12 8 8.1657 -5.4819 1.3158 13 6 8.1918 -6.8205 3.2593 14 6 9.6285 -7.1068 2.8179 15 6 10.2795 -8.0431 3.8030 16 1 9.7243 -8.3981 4.6586 17 6 11.5841 -8.4466 3.6120 18 7 12.2603 -8.0139 2.5703 19 14 12.3913 -9.6067 4.8334 20 1 12.1568 -11.0111 4.4115 21 1 13.8515 -9.3406 4.8782 22 1 11.8072 -9.3907 6.1816 23 6 4.2114 -2.0577 1.0132 24 6 3.6467 -1.1925 -0.1186 25 1 -0.3634 0.0845 1.0242 26 1 -0.3634 0.8447 -0.5853 27 1 -0.3633 -0.9292 -0.4389 28 1 1.5433 -2.9965 -0.8225 29 1 0.4226 -2.2666 0.3573 30 1 1.6786 -4.2611 1.2686 31 1 1.9553 -2.7659 2.1948 32 1 3.6354 -5.2263 1.9796 33 1 4.2029 -3.8359 2.9351 34 1 6.1948 -3.6426 1.4710 35 1 5.6273 -5.0330 0.5154 36 1 5.7649 -5.8134 3.2261 37 1 8.1998 -6.3598 4.2471 38 1 7.6311 -7.7544 3.2985 39 1 9.6200 -7.5676 1.8301 40 1 10.1893 -6.1729 2.7784 41 1 13.1779 -8.2981 2.4358 42 1 4.0172 -1.5754 1.9712 43 1 5.2861 -2.1781 0.8774 44 1 3.9293 -1.6189 -1.0812 45 1 4.0383 -0.1788 -0.0348 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360003381.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:53:31 Heat of formation + Delta-G solvation = -70.871773 kcal Electronic energy + Delta-G solvation = -23448.109699 eV Core-core repulsion = 19886.405728 eV Total energy + Delta-G solvation = -3561.703970 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.60250 -39.24899 -38.40526 -35.71653 -34.05142 -33.43880 -32.10456 -31.16187 -30.40558 -29.11280 -26.76757 -25.31928 -24.18731 -22.71108 -21.61799 -21.28195 -19.68829 -19.31050 -17.61376 -16.86964 -16.44429 -16.12036 -15.98136 -15.81309 -15.68591 -15.13631 -14.85558 -14.67631 -14.35732 -14.27242 -13.98653 -13.61548 -13.30029 -13.02889 -12.58442 -12.46963 -12.27262 -12.23153 -12.16129 -11.78879 -11.70643 -11.57485 -11.21473 -11.15397 -10.92302 -10.59713 -10.20134 -9.95407 -9.66472 -9.25303 -9.18631 -9.01984 -8.79017 -8.74678 -8.31589 -5.95705 -4.00160 2.20560 2.52093 3.12596 3.26048 3.33394 3.39473 3.42011 3.82406 4.09601 4.37395 4.41286 4.47933 4.56677 4.64811 4.71474 4.80753 4.82760 4.90413 4.99020 5.07700 5.15808 5.22380 5.34465 5.35430 5.39143 5.42323 5.56385 5.60897 5.78658 5.93336 6.00503 6.22751 6.24101 6.46454 6.54649 6.72733 6.89503 6.97471 7.74302 7.74717 7.86620 7.86858 8.07776 8.39049 8.78024 9.08538 9.63283 11.15234 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.050504 B = 0.001988 C = 0.001946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 554.274016 B =14084.492219 C =14381.377088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.512 3.488 3 O -0.548 6.548 4 N -0.617 5.617 5 C 0.110 3.890 6 C 0.041 3.959 7 N -0.534 5.534 8 C 0.047 3.953 9 C 0.122 3.878 10 N -0.746 5.746 11 C 0.510 3.490 12 O -0.533 6.533 13 C -0.130 4.130 14 C 0.036 3.964 15 C -0.527 4.527 16 H 0.056 0.944 17 C 0.057 3.943 18 N -0.889 5.889 19 Si 0.893 3.107 20 H -0.281 1.281 21 H -0.286 1.286 22 H -0.274 1.274 23 C 0.035 3.965 24 C 0.115 3.885 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.091 0.909 31 H 0.040 0.960 32 H 0.083 0.917 33 H 0.041 0.959 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.396 0.604 37 H 0.079 0.921 38 H 0.079 0.921 39 H 0.024 0.976 40 H 0.023 0.977 41 H 0.261 0.739 42 H 0.040 0.960 43 H 0.096 0.904 44 H 0.078 0.922 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.511 11.383 -2.748 30.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.301 3.699 3 O -0.425 6.425 4 N -0.352 5.352 5 C -0.013 4.013 6 C -0.088 4.088 7 N -0.259 5.259 8 C -0.081 4.081 9 C -0.003 4.003 10 N -0.401 5.401 11 C 0.298 3.702 12 O -0.408 6.408 13 C -0.170 4.170 14 C -0.001 4.001 15 C -0.566 4.566 16 H 0.074 0.926 17 C -0.144 4.144 18 N -0.528 5.528 19 Si 0.721 3.279 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.093 4.093 24 C -0.008 4.008 25 H 0.111 0.889 26 H 0.112 0.888 27 H 0.101 0.899 28 H 0.099 0.901 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.058 0.942 32 H 0.102 0.898 33 H 0.059 0.941 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.229 0.771 37 H 0.097 0.903 38 H 0.098 0.902 39 H 0.042 0.958 40 H 0.042 0.958 41 H 0.071 0.929 42 H 0.059 0.941 43 H 0.114 0.886 44 H 0.097 0.903 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -27.480 12.055 -4.025 30.277 hybrid contribution 0.083 -0.605 1.852 1.951 sum -27.397 11.450 -2.173 29.773 Atomic orbital electron populations 1.21961 0.91765 1.04847 1.04901 1.20848 0.90676 0.82988 0.75385 1.90727 1.70708 1.31049 1.50049 1.48267 1.07716 1.06158 1.73016 1.21924 0.96046 0.83638 0.99695 1.22487 0.88454 1.00792 0.97032 1.61800 1.02585 1.10523 1.50998 1.22252 0.95368 0.96929 0.93533 1.21168 0.91066 0.94219 0.93829 1.46127 1.14633 1.50260 1.29038 1.21556 0.80262 0.81191 0.87143 1.90676 1.62839 1.55895 1.31380 1.21866 1.01091 0.96917 0.97080 1.18902 0.87038 0.97292 0.96887 1.21224 0.97646 1.28295 1.09421 0.92609 1.25036 0.97409 0.96468 0.95529 1.70003 1.10461 1.44296 1.28025 0.86583 0.78623 0.81167 0.81509 1.20680 1.21224 1.19922 1.22619 1.00227 0.88548 0.97903 1.21732 0.78957 1.01209 0.98877 0.88851 0.88774 0.89925 0.90140 0.88979 0.89078 0.94196 0.89821 0.94072 0.91894 0.90862 0.77070 0.90275 0.90241 0.95804 0.95822 0.92948 0.94143 0.88572 0.90344 0.88511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.78 9.47 36.01 0.34 -0.44 16 2 C 0.51 4.58 7.81 -10.99 -0.09 4.49 16 3 O -0.55 -7.39 16.55 5.56 0.09 -7.29 16 4 N -0.62 -4.75 3.01 -172.45 -0.52 -5.27 16 5 C 0.11 0.53 6.28 -3.60 -0.02 0.50 16 6 C 0.04 0.23 5.62 -3.69 -0.02 0.21 16 7 N -0.53 -4.19 4.63 -234.32 -1.08 -5.28 16 8 C 0.05 0.38 5.08 -3.82 -0.02 0.36 16 9 C 0.12 1.44 5.61 -4.04 -0.02 1.41 16 10 N -0.75 -9.97 5.56 -60.29 -0.33 -10.30 16 11 C 0.51 9.71 7.83 -10.98 -0.09 9.62 16 12 O -0.53 -12.62 15.98 5.56 0.09 -12.53 16 13 C -0.13 -2.60 5.64 -27.88 -0.16 -2.76 16 14 C 0.04 0.98 4.26 -27.89 -0.12 0.86 16 15 C -0.53 -14.98 9.11 -34.44 -0.31 -15.30 16 16 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 17 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 18 N -0.89 -27.51 13.29 55.43 0.74 -26.77 16 19 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 20 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 21 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 22 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 23 C 0.04 0.30 5.46 -3.70 -0.02 0.28 16 24 C 0.11 0.99 6.61 -3.60 -0.02 0.97 16 25 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 26 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.08 0.18 6.26 -51.93 -0.32 -0.14 16 28 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.09 0.21 5.75 -51.93 -0.30 -0.09 16 30 H 0.09 0.37 7.99 -51.93 -0.41 -0.04 16 31 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 32 H 0.08 0.58 7.97 -51.93 -0.41 0.17 16 33 H 0.04 0.32 8.12 -51.93 -0.42 -0.10 16 34 H 0.06 0.82 6.40 -51.93 -0.33 0.48 16 35 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 36 H 0.40 3.98 8.47 -40.82 -0.35 3.64 16 37 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 38 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 39 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 40 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 41 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 42 H 0.04 0.37 8.14 -51.92 -0.42 -0.06 16 43 H 0.10 0.87 6.16 -51.93 -0.32 0.55 16 44 H 0.08 0.66 8.14 -51.92 -0.42 0.24 16 45 H 0.10 0.96 7.04 -51.93 -0.37 0.60 16 LS Contribution 363.80 15.07 5.48 5.48 Total: -1.00 -37.36 363.80 -8.63 -45.99 By element: Atomic # 1 Polarization: 4.96 SS G_CDS: -7.43 Total: -2.46 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: -0.65 Total: 1.79 kcal Atomic # 7 Polarization: -46.42 SS G_CDS: -1.20 Total: -47.63 kcal Atomic # 8 Polarization: -20.01 SS G_CDS: 0.18 Total: -19.83 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -37.36 -8.63 -45.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360003381.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.877 kcal (2) G-P(sol) polarization free energy of solvation -37.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds