Wall clock time and date at job start Tue Mar 31 2020 03:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.47328 * 2 1 4 4 C 1.50700 * 109.46512 * 239.99914 * 2 1 3 5 5 O 1.21282 * 120.00106 * 249.94120 * 4 2 1 6 6 N 1.34779 * 120.00083 * 69.95343 * 4 2 1 7 7 C 1.46498 * 119.99788 * 5.08071 * 6 4 2 8 8 C 1.46499 * 119.99993 * 185.08264 * 6 4 2 9 9 C 1.50693 * 109.47153 * 89.99762 * 8 6 4 10 10 H 1.08002 * 120.00161 * 359.97438 * 9 8 6 11 11 C 1.37884 * 120.00180 * 179.97438 * 9 8 6 12 12 N 1.31511 * 119.99809 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 119.99961 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.46802 * 90.00461 * 13 11 9 15 15 H 1.48495 * 109.47329 * 209.99985 * 13 11 9 16 16 H 1.48495 * 109.47511 * 330.00682 * 13 11 9 17 17 N 1.46900 * 109.46876 * 120.00241 * 2 1 3 18 18 C 1.47843 * 110.99710 * 179.15571 * 17 2 1 19 19 C 1.54906 * 104.79807 * 146.36197 * 18 17 2 20 20 C 1.55396 * 101.73891 * 323.02054 * 19 18 17 21 21 H 1.09003 * 110.67931 * 277.17080 * 20 19 18 22 22 C 1.53005 * 110.84627 * 153.86249 * 20 19 18 23 23 C 1.50697 * 109.47155 * 71.45748 * 22 20 19 24 24 N 1.34780 * 120.00158 * 179.97438 * 23 22 20 25 25 O 1.21276 * 120.00080 * 0.02562 * 23 22 20 26 26 C 1.47439 * 111.00091 * 299.99665 * 17 2 1 27 27 H 1.09002 * 109.46800 * 291.08195 * 1 2 3 28 28 H 1.08998 * 109.46908 * 51.07990 * 1 2 3 29 29 H 1.08997 * 109.47540 * 171.08235 * 1 2 3 30 30 H 1.09008 * 109.46984 * 93.99904 * 7 6 4 31 31 H 1.09004 * 109.47166 * 213.98935 * 7 6 4 32 32 H 1.08997 * 109.47084 * 333.99577 * 7 6 4 33 33 H 1.08997 * 109.47018 * 209.99825 * 8 6 4 34 34 H 1.08999 * 109.47082 * 329.99760 * 8 6 4 35 35 H 0.96999 * 119.99835 * 179.97438 * 12 11 9 36 36 H 1.09000 * 110.37294 * 265.19285 * 18 17 2 37 37 H 1.08999 * 110.37696 * 27.52831 * 18 17 2 38 38 H 1.09002 * 110.98866 * 81.02005 * 19 18 17 39 39 H 1.08995 * 110.99392 * 204.80074 * 19 18 17 40 40 H 1.08994 * 109.47110 * 191.46490 * 22 20 19 41 41 H 1.09007 * 109.46818 * 311.46294 * 22 20 19 42 42 H 0.96998 * 119.99451 * 0.02562 * 24 23 22 43 43 H 0.96997 * 119.99994 * 180.02562 * 24 23 22 44 44 H 1.09001 * 109.88495 * 356.14971 * 26 17 2 45 45 H 1.08997 * 109.89312 * 117.17638 * 26 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 8 2.5740 -1.7907 -1.1284 6 7 1.8796 -0.1452 -2.4445 7 6 1.3272 1.2068 -2.5587 8 6 2.2659 -0.8829 -3.6498 9 6 1.0883 -1.6785 -4.1509 10 1 0.1464 -1.6390 -3.6240 11 6 1.2134 -2.4570 -5.2821 12 7 2.3605 -2.5055 -5.9233 13 14 -0.2462 -3.4438 -5.9028 14 1 -1.0302 -2.6202 -6.8580 15 1 0.2396 -4.6684 -6.5879 16 1 -1.1084 -3.8270 -4.7561 17 7 2.0196 -0.6926 1.1994 18 6 3.4974 -0.7299 1.2234 19 6 3.8712 -0.6370 2.7239 20 6 2.7925 0.3457 3.2582 21 1 3.0873 1.3786 3.0730 22 6 2.5353 0.1140 4.7485 23 6 3.7204 0.5974 5.5440 24 7 3.7175 0.4941 6.8878 25 8 4.6764 1.0801 4.9750 26 6 1.5470 -0.0240 2.4256 27 1 -0.3633 0.3697 0.9589 28 1 -0.3633 0.6456 -0.7995 29 1 -0.3634 -1.0152 -0.1593 30 1 2.1418 1.9302 -2.5949 31 1 0.7344 1.2813 -3.4705 32 1 0.6945 1.4149 -1.6959 33 1 2.5836 -0.1799 -4.4198 34 1 3.0875 -1.5593 -3.4140 35 1 2.4486 -3.0535 -6.7189 36 1 3.8603 -1.6661 0.7992 37 1 3.9075 0.1194 0.6769 38 1 3.7849 -1.6095 3.2086 39 1 4.8728 -0.2267 2.8521 40 1 1.6446 0.6634 5.0532 41 1 2.3855 -0.9504 4.9302 42 1 2.9527 0.1084 7.3429 43 1 4.4802 0.8056 7.3998 44 1 0.9933 0.8783 2.1659 45 1 0.9083 -0.7001 2.9939 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000367990400.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:17 Heat of formation + Delta-G solvation = -64.378947 kcal Electronic energy + Delta-G solvation = -24836.160559 eV Core-core repulsion = 21274.738139 eV Total energy + Delta-G solvation = -3561.422420 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.25784 -39.46961 -37.87395 -34.73679 -34.01927 -33.91595 -32.52023 -31.00800 -28.71497 -27.48050 -26.99811 -25.83964 -23.83822 -22.27049 -21.40715 -20.68875 -19.90082 -18.40658 -17.74537 -16.97406 -16.55658 -16.46101 -16.15780 -15.45652 -14.86866 -14.76450 -14.52145 -14.17151 -13.79550 -13.71553 -13.39432 -13.16487 -12.91975 -12.37729 -12.20225 -12.12234 -12.01032 -11.86375 -11.58165 -11.25104 -11.15203 -11.05643 -10.93602 -10.83403 -10.79737 -10.54242 -10.51215 -10.16485 -10.10568 -10.01242 -9.57014 -8.74399 -8.39850 -8.04461 -7.54329 -6.00285 -4.04923 2.36810 3.20103 3.32442 3.39038 3.42771 3.52433 3.79510 4.26920 4.41584 4.48003 4.54515 4.66027 4.92235 5.08605 5.18427 5.25830 5.30630 5.34558 5.37227 5.42312 5.46980 5.55575 5.60515 5.77307 5.85708 5.91592 5.97393 6.04531 6.11434 6.22553 6.29852 6.40253 6.43045 6.47744 6.97755 7.02915 7.15812 7.25526 7.51139 7.61954 7.96290 7.96970 8.28333 8.50242 8.95519 9.20049 9.60159 11.07760 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.033264 B = 0.002972 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.542715 B = 9417.779542 C = 9499.863839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.060 3.940 3 H 0.055 0.945 4 C 0.511 3.489 5 O -0.524 6.524 6 N -0.604 5.604 7 C 0.074 3.926 8 C 0.246 3.754 9 C -0.524 4.524 10 H 0.057 0.943 11 C 0.060 3.940 12 N -0.895 5.895 13 Si 0.898 3.102 14 H -0.281 1.281 15 H -0.285 1.285 16 H -0.274 1.274 17 N -0.504 5.504 18 C 0.049 3.951 19 C -0.120 4.120 20 C -0.096 4.096 21 H 0.083 0.917 22 C -0.131 4.131 23 C 0.515 3.485 24 N -0.861 5.861 25 O -0.538 6.538 26 C 0.045 3.955 27 H 0.062 0.938 28 H 0.071 0.929 29 H 0.070 0.930 30 H 0.042 0.958 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.030 0.970 34 H 0.044 0.956 35 H 0.263 0.737 36 H 0.095 0.905 37 H 0.040 0.960 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.095 0.905 41 H 0.099 0.901 42 H 0.401 0.599 43 H 0.399 0.601 44 H 0.057 0.943 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.672 9.349 23.596 25.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.053 4.053 3 H 0.073 0.927 4 C 0.296 3.704 5 O -0.400 6.400 6 N -0.337 5.337 7 C -0.070 4.070 8 C 0.127 3.873 9 C -0.563 4.563 10 H 0.075 0.925 11 C -0.142 4.142 12 N -0.534 5.534 13 Si 0.726 3.274 14 H -0.207 1.207 15 H -0.211 1.211 16 H -0.199 1.199 17 N -0.229 5.229 18 C -0.078 4.078 19 C -0.158 4.158 20 C -0.116 4.116 21 H 0.101 0.899 22 C -0.171 4.171 23 C 0.301 3.699 24 N -0.425 5.425 25 O -0.414 6.414 26 C -0.083 4.083 27 H 0.081 0.919 28 H 0.089 0.911 29 H 0.089 0.911 30 H 0.060 0.940 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.048 0.952 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.114 0.886 37 H 0.058 0.942 38 H 0.089 0.911 39 H 0.097 0.903 40 H 0.113 0.887 41 H 0.117 0.883 42 H 0.229 0.771 43 H 0.229 0.771 44 H 0.075 0.925 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.960 8.455 22.865 24.457 hybrid contribution -0.648 0.315 0.012 0.720 sum -2.608 8.770 22.877 24.638 Atomic orbital electron populations 1.21936 0.92497 1.03809 1.01946 1.21835 0.97084 0.95618 0.90726 0.92714 1.20051 0.80130 0.86229 0.83963 1.90644 1.42486 1.21070 1.85779 1.48100 1.62393 1.15700 1.07535 1.21840 0.98163 0.84187 1.02777 1.19260 0.96666 0.91525 0.79866 1.21441 0.97550 1.27229 1.10108 0.92470 1.24944 0.96083 0.96575 0.96579 1.69936 1.23990 1.40436 1.19076 0.86499 0.82505 0.79633 0.78803 1.20696 1.21112 1.19867 1.63406 1.09615 1.49941 0.99907 1.23058 0.86755 1.02485 0.95545 1.22835 0.98901 0.98717 0.95391 1.22219 0.96324 1.00905 0.92161 0.89880 1.21673 0.96582 1.03435 0.95409 1.20802 0.88984 0.77627 0.82531 1.43945 1.23884 1.66888 1.07793 1.90757 1.36286 1.44217 1.70134 1.22945 0.96374 0.97696 0.91245 0.91927 0.91075 0.91088 0.93963 0.90932 0.91734 0.95154 0.93788 0.92757 0.88645 0.94203 0.91111 0.90254 0.88709 0.88306 0.77133 0.77050 0.92481 0.90379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 8.88 37.16 0.33 -1.67 16 2 C 0.06 0.96 1.22 -68.86 -0.08 0.88 16 3 H 0.06 0.80 7.47 -51.93 -0.39 0.41 16 4 C 0.51 11.04 6.49 -10.98 -0.07 10.97 16 5 O -0.52 -13.56 14.31 5.56 0.08 -13.48 16 6 N -0.60 -13.23 2.86 -182.96 -0.52 -13.75 16 7 C 0.07 1.22 10.02 59.85 0.60 1.82 16 8 C 0.25 6.61 5.22 -5.20 -0.03 6.58 16 9 C -0.52 -15.11 9.39 -34.44 -0.32 -15.43 16 10 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 11 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 12 N -0.90 -27.07 13.29 55.43 0.74 -26.33 16 13 Si 0.90 22.15 29.54 -169.99 -5.02 17.13 16 14 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 15 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 16 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 17 N -0.50 -7.79 4.78 -224.69 -1.07 -8.86 16 18 C 0.05 0.77 5.45 -2.30 -0.01 0.76 16 19 C -0.12 -1.52 5.95 -24.45 -0.15 -1.67 16 20 C -0.10 -1.00 2.51 -88.66 -0.22 -1.22 16 21 H 0.08 0.96 7.89 -51.93 -0.41 0.55 16 22 C -0.13 -0.93 5.06 -27.88 -0.14 -1.07 16 23 C 0.52 4.53 7.93 -10.99 -0.09 4.44 16 24 N -0.86 -4.17 8.87 31.22 0.28 -3.89 16 25 O -0.54 -7.23 15.75 5.56 0.09 -7.14 16 26 C 0.05 0.50 5.61 -2.84 -0.02 0.49 16 27 H 0.06 0.68 6.29 -51.93 -0.33 0.36 16 28 H 0.07 0.92 5.72 -51.93 -0.30 0.62 16 29 H 0.07 1.15 8.12 -51.93 -0.42 0.72 16 30 H 0.04 0.62 8.14 -51.92 -0.42 0.19 16 31 H 0.07 1.21 8.10 -51.93 -0.42 0.79 16 32 H 0.06 0.87 4.09 -51.93 -0.21 0.66 16 33 H 0.03 0.82 8.07 -51.93 -0.42 0.41 16 34 H 0.04 1.33 7.36 -51.93 -0.38 0.95 16 35 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 36 H 0.10 1.77 7.15 -51.93 -0.37 1.40 16 37 H 0.04 0.65 7.77 -51.93 -0.40 0.25 16 38 H 0.07 0.85 7.95 -51.93 -0.41 0.44 16 39 H 0.08 1.07 7.52 -51.93 -0.39 0.68 16 40 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 41 H 0.10 0.59 8.00 -51.93 -0.42 0.17 16 42 H 0.40 0.69 8.83 -40.82 -0.36 0.33 16 43 H 0.40 1.72 8.93 -40.82 -0.36 1.36 16 44 H 0.06 0.57 6.41 -51.93 -0.33 0.23 16 45 H 0.08 0.77 7.82 -51.93 -0.41 0.37 16 LS Contribution 355.78 15.07 5.36 5.36 Total: -1.00 -36.88 355.78 -7.50 -44.37 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -7.12 Total: 0.07 kcal Atomic # 6 Polarization: 6.82 SS G_CDS: -0.30 Total: 6.52 kcal Atomic # 7 Polarization: -52.25 SS G_CDS: -0.58 Total: -52.83 kcal Atomic # 8 Polarization: -20.79 SS G_CDS: 0.17 Total: -20.62 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -36.88 -7.50 -44.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367990400.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.004 kcal (2) G-P(sol) polarization free energy of solvation -36.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds