Wall clock time and date at job start Tue Mar 31 2020 03:19:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08994 * 109.47328 * 2 1 4 4 C 1.50700 * 109.46512 * 239.99914 * 2 1 3 5 5 O 1.21282 * 120.00106 * 249.94120 * 4 2 1 6 6 N 1.34779 * 120.00083 * 69.95343 * 4 2 1 7 7 C 1.46498 * 119.99788 * 5.08071 * 6 4 2 8 8 C 1.46499 * 119.99993 * 185.08264 * 6 4 2 9 9 C 1.50693 * 109.47153 * 89.99762 * 8 6 4 10 10 H 1.08002 * 120.00161 * 359.97438 * 9 8 6 11 11 C 1.37884 * 120.00180 * 179.97438 * 9 8 6 12 12 N 1.31511 * 119.99809 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 119.99961 * 179.97438 * 11 9 8 14 14 H 1.48504 * 109.46802 * 90.00461 * 13 11 9 15 15 H 1.48495 * 109.47329 * 209.99985 * 13 11 9 16 16 H 1.48495 * 109.47511 * 330.00682 * 13 11 9 17 17 N 1.46900 * 109.46876 * 120.00241 * 2 1 3 18 18 C 1.47843 * 110.99710 * 179.15571 * 17 2 1 19 19 C 1.54906 * 104.79807 * 146.36197 * 18 17 2 20 20 C 1.55396 * 101.73891 * 323.02054 * 19 18 17 21 21 H 1.09003 * 110.67931 * 277.17080 * 20 19 18 22 22 C 1.53005 * 110.84627 * 153.86249 * 20 19 18 23 23 C 1.50697 * 109.47155 * 71.45748 * 22 20 19 24 24 N 1.34780 * 120.00158 * 179.97438 * 23 22 20 25 25 O 1.21276 * 120.00080 * 0.02562 * 23 22 20 26 26 C 1.47439 * 111.00091 * 299.99665 * 17 2 1 27 27 H 1.09002 * 109.46800 * 291.08195 * 1 2 3 28 28 H 1.08998 * 109.46908 * 51.07990 * 1 2 3 29 29 H 1.08997 * 109.47540 * 171.08235 * 1 2 3 30 30 H 1.09008 * 109.46984 * 93.99904 * 7 6 4 31 31 H 1.09004 * 109.47166 * 213.98935 * 7 6 4 32 32 H 1.08997 * 109.47084 * 333.99577 * 7 6 4 33 33 H 1.08997 * 109.47018 * 209.99825 * 8 6 4 34 34 H 1.08999 * 109.47082 * 329.99760 * 8 6 4 35 35 H 0.96999 * 119.99835 * 179.97438 * 12 11 9 36 36 H 1.09000 * 110.37294 * 265.19285 * 18 17 2 37 37 H 1.08999 * 110.37696 * 27.52831 * 18 17 2 38 38 H 1.09002 * 110.98866 * 81.02005 * 19 18 17 39 39 H 1.08995 * 110.99392 * 204.80074 * 19 18 17 40 40 H 1.08994 * 109.47110 * 191.46490 * 22 20 19 41 41 H 1.09007 * 109.46818 * 311.46294 * 22 20 19 42 42 H 0.96998 * 119.99451 * 0.02562 * 24 23 22 43 43 H 0.96997 * 119.99994 * 180.02562 * 24 23 22 44 44 H 1.09001 * 109.88495 * 356.14971 * 26 17 2 45 45 H 1.08997 * 109.89312 * 117.17638 * 26 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2305 5 8 2.5740 -1.7907 -1.1284 6 7 1.8796 -0.1452 -2.4445 7 6 1.3272 1.2068 -2.5587 8 6 2.2659 -0.8829 -3.6498 9 6 1.0883 -1.6785 -4.1509 10 1 0.1464 -1.6390 -3.6240 11 6 1.2134 -2.4570 -5.2821 12 7 2.3605 -2.5055 -5.9233 13 14 -0.2462 -3.4438 -5.9028 14 1 -1.0302 -2.6202 -6.8580 15 1 0.2396 -4.6684 -6.5879 16 1 -1.1084 -3.8270 -4.7561 17 7 2.0196 -0.6926 1.1994 18 6 3.4974 -0.7299 1.2234 19 6 3.8712 -0.6370 2.7239 20 6 2.7925 0.3457 3.2582 21 1 3.0873 1.3786 3.0730 22 6 2.5353 0.1140 4.7485 23 6 3.7204 0.5974 5.5440 24 7 3.7175 0.4941 6.8878 25 8 4.6764 1.0801 4.9750 26 6 1.5470 -0.0240 2.4256 27 1 -0.3633 0.3697 0.9589 28 1 -0.3633 0.6456 -0.7995 29 1 -0.3634 -1.0152 -0.1593 30 1 2.1418 1.9302 -2.5949 31 1 0.7344 1.2813 -3.4705 32 1 0.6945 1.4149 -1.6959 33 1 2.5836 -0.1799 -4.4198 34 1 3.0875 -1.5593 -3.4140 35 1 2.4486 -3.0535 -6.7189 36 1 3.8603 -1.6661 0.7992 37 1 3.9075 0.1194 0.6769 38 1 3.7849 -1.6095 3.2086 39 1 4.8728 -0.2267 2.8521 40 1 1.6446 0.6634 5.0532 41 1 2.3855 -0.9504 4.9302 42 1 2.9527 0.1084 7.3429 43 1 4.4802 0.8056 7.3998 44 1 0.9933 0.8783 2.1659 45 1 0.9083 -0.7001 2.9939 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000367990400.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:17 Heat of formation + Delta-G solvation = -95.052349 kcal Electronic energy + Delta-G solvation = -24837.490658 eV Core-core repulsion = 21274.738139 eV Total energy + Delta-G solvation = -3562.752519 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.39738 -40.52240 -39.13283 -36.56914 -35.23738 -34.60165 -34.45897 -32.04060 -30.16327 -29.11400 -27.91463 -27.34819 -25.57369 -23.78077 -22.41708 -21.67121 -20.72340 -19.95976 -18.67209 -18.43528 -17.95339 -17.72026 -17.33323 -16.71192 -16.26663 -16.06795 -15.94504 -15.68282 -14.99605 -14.72555 -14.46363 -14.34980 -14.22590 -14.02606 -13.62178 -13.46692 -13.22702 -13.21266 -12.97116 -12.92209 -12.65872 -12.50203 -12.35581 -12.23208 -12.06323 -11.97929 -11.75033 -11.68537 -11.52087 -10.89120 -10.64574 -10.55961 -10.43274 -9.41714 -9.19363 -8.22336 -6.37691 1.36172 1.39878 1.50284 1.75287 1.85086 2.25767 2.41634 2.71015 3.02771 3.06898 3.57432 3.63330 3.81060 3.93377 4.07377 4.14505 4.18791 4.28501 4.33154 4.51338 4.57186 4.65439 4.67562 4.74070 4.84197 4.85889 4.87349 4.95232 5.01250 5.03966 5.09937 5.17865 5.22601 5.32121 5.40978 5.56094 5.83188 5.95599 5.98157 6.05928 6.14213 6.56577 6.70703 6.80968 7.28597 7.45689 7.52183 8.84953 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.033264 B = 0.002972 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 841.542715 B = 9417.779542 C = 9499.863839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.071 3.929 3 H 0.080 0.920 4 C 0.498 3.502 5 O -0.581 6.581 6 N -0.612 5.612 7 C 0.069 3.931 8 C 0.260 3.740 9 C -0.540 4.540 10 H 0.055 0.945 11 C 0.004 3.996 12 N -0.931 5.931 13 Si 0.971 3.029 14 H -0.261 1.261 15 H -0.282 1.282 16 H -0.271 1.271 17 N -0.525 5.525 18 C 0.051 3.949 19 C -0.112 4.112 20 C -0.087 4.087 21 H 0.072 0.928 22 C -0.123 4.123 23 C 0.510 3.490 24 N -0.842 5.842 25 O -0.595 6.595 26 C 0.047 3.953 27 H 0.103 0.897 28 H 0.083 0.917 29 H 0.043 0.957 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.102 0.898 33 H 0.021 0.979 34 H -0.006 1.006 35 H 0.267 0.733 36 H 0.053 0.947 37 H 0.026 0.974 38 H 0.075 0.925 39 H 0.065 0.935 40 H 0.131 0.869 41 H 0.117 0.883 42 H 0.419 0.581 43 H 0.403 0.597 44 H 0.080 0.920 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.898 10.665 25.973 28.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.041 4.041 3 H 0.097 0.903 4 C 0.286 3.714 5 O -0.460 6.460 6 N -0.344 5.344 7 C -0.073 4.073 8 C 0.139 3.861 9 C -0.578 4.578 10 H 0.074 0.926 11 C -0.194 4.194 12 N -0.571 5.571 13 Si 0.795 3.205 14 H -0.186 1.186 15 H -0.207 1.207 16 H -0.196 1.196 17 N -0.250 5.250 18 C -0.077 4.077 19 C -0.150 4.150 20 C -0.107 4.107 21 H 0.091 0.909 22 C -0.163 4.163 23 C 0.296 3.704 24 N -0.406 5.406 25 O -0.475 6.475 26 C -0.080 4.080 27 H 0.122 0.878 28 H 0.102 0.898 29 H 0.062 0.938 30 H 0.081 0.919 31 H 0.087 0.913 32 H 0.120 0.880 33 H 0.039 0.961 34 H 0.012 0.988 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.044 0.956 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.149 0.851 41 H 0.135 0.865 42 H 0.250 0.750 43 H 0.234 0.766 44 H 0.098 0.902 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -5.239 9.811 25.307 27.643 hybrid contribution 0.430 -0.094 -0.681 0.811 sum -4.810 9.717 24.625 26.907 Atomic orbital electron populations 1.21953 0.90114 1.02735 1.04747 1.21787 0.98580 0.95621 0.88118 0.90292 1.21209 0.78910 0.85890 0.85353 1.90614 1.44818 1.23863 1.86739 1.48135 1.62516 1.17461 1.06323 1.22140 0.99331 0.81412 1.04389 1.18718 0.94873 0.90895 0.81644 1.21689 0.97770 1.27930 1.10453 0.92630 1.25923 0.99194 0.97578 0.96729 1.70068 1.26220 1.41218 1.19573 0.85365 0.78711 0.78048 0.78390 1.18620 1.20741 1.19575 1.63335 1.08876 1.51478 1.01320 1.22863 0.87734 0.99675 0.97417 1.22725 0.99249 0.99824 0.93200 1.22116 0.94745 0.99333 0.94478 0.90937 1.21670 0.97054 1.05069 0.92521 1.21153 0.88718 0.76968 0.83569 1.43795 1.24604 1.65451 1.06704 1.90748 1.38341 1.47053 1.71388 1.23094 0.96750 0.98857 0.89314 0.87825 0.89828 0.93758 0.91916 0.91267 0.87986 0.96145 0.98794 0.92427 0.92896 0.95602 0.90588 0.91649 0.85086 0.86503 0.75001 0.76611 0.90168 0.88222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.38 8.88 71.98 0.64 -2.75 16 2 C 0.07 2.18 1.22 44.17 0.05 2.23 16 3 H 0.08 2.07 7.47 -2.39 -0.02 2.05 16 4 C 0.50 22.17 6.49 87.66 0.57 22.74 16 5 O -0.58 -32.07 14.31 -3.04 -0.04 -32.12 16 6 N -0.61 -27.43 2.86 -851.14 -2.43 -29.86 16 7 C 0.07 2.17 10.02 127.77 1.28 3.45 16 8 C 0.26 14.73 5.22 85.63 0.45 15.17 16 9 C -0.54 -31.98 9.39 25.60 0.24 -31.74 16 10 H 0.06 3.23 7.81 -2.91 -0.02 3.21 16 11 C 0.00 0.26 5.46 84.66 0.46 0.72 16 12 N -0.93 -57.96 13.29 21.45 0.28 -57.67 16 13 Si 0.97 45.76 29.54 68.60 2.03 47.79 16 14 H -0.26 -11.46 7.11 99.48 0.71 -10.76 16 15 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 16 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 17 N -0.52 -15.70 4.78 -864.78 -4.13 -19.83 16 18 C 0.05 1.68 5.45 86.77 0.47 2.16 16 19 C -0.11 -2.84 5.95 32.07 0.19 -2.65 16 20 C -0.09 -1.60 2.51 -9.52 -0.02 -1.62 16 21 H 0.07 1.52 7.89 -2.39 -0.02 1.51 16 22 C -0.12 -1.29 5.06 29.85 0.15 -1.13 16 23 C 0.51 7.81 7.93 87.66 0.70 8.51 16 24 N -0.84 -5.81 8.87 -173.53 -1.54 -7.35 16 25 O -0.59 -15.68 15.75 -3.02 -0.05 -15.72 16 26 C 0.05 0.86 5.61 86.65 0.49 1.35 16 27 H 0.10 1.71 6.29 -2.39 -0.02 1.69 16 28 H 0.08 1.82 5.72 -2.39 -0.01 1.81 16 29 H 0.04 1.34 8.12 -2.39 -0.02 1.32 16 30 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 31 H 0.07 2.23 8.10 -2.38 -0.02 2.21 16 32 H 0.10 2.41 4.09 -2.39 -0.01 2.40 16 33 H 0.02 1.17 8.07 -2.39 -0.02 1.16 16 34 H -0.01 -0.40 7.36 -2.39 -0.02 -0.42 16 35 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 36 H 0.05 2.16 7.15 -2.39 -0.02 2.15 16 37 H 0.03 0.89 7.77 -2.39 -0.02 0.87 16 38 H 0.08 1.81 7.95 -2.39 -0.02 1.79 16 39 H 0.06 1.84 7.52 -2.39 -0.02 1.82 16 40 H 0.13 0.49 8.14 -2.39 -0.02 0.47 16 41 H 0.12 0.87 8.00 -2.38 -0.02 0.85 16 42 H 0.42 -0.11 8.83 -92.71 -0.82 -0.93 16 43 H 0.40 2.62 8.93 -92.71 -0.83 1.79 16 44 H 0.08 1.16 6.41 -2.39 -0.02 1.14 16 45 H 0.10 1.48 7.82 -2.39 -0.02 1.46 16 Total: -1.00 -87.60 355.78 -0.85 -88.46 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -0.63 Total: 9.87 kcal Atomic # 6 Polarization: 10.77 SS G_CDS: 5.66 Total: 16.44 kcal Atomic # 7 Polarization: -106.90 SS G_CDS: -7.82 Total: -114.72 kcal Atomic # 8 Polarization: -47.75 SS G_CDS: -0.09 Total: -47.84 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -87.60 -0.85 -88.46 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367990400.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.596 kcal (2) G-P(sol) polarization free energy of solvation -87.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.457 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds