Wall clock time and date at job start Tue Mar 31 2020 03:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47176 * 2 1 4 4 C 1.50704 * 109.47265 * 119.99657 * 2 1 3 5 5 O 1.21284 * 119.99592 * 97.76458 * 4 2 1 6 6 N 1.34768 * 120.00226 * 277.77120 * 4 2 1 7 7 C 1.46500 * 119.99891 * 359.97438 * 6 4 2 8 8 C 1.46505 * 120.00204 * 180.02562 * 6 4 2 9 9 C 1.50696 * 109.47158 * 89.99396 * 8 6 4 10 10 H 1.07997 * 120.00241 * 0.02562 * 9 8 6 11 11 C 1.37876 * 119.99939 * 180.02562 * 9 8 6 12 12 N 1.31509 * 119.99969 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 119.99980 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47420 * 359.97438 * 13 11 9 15 15 H 1.48502 * 109.47713 * 119.99761 * 13 11 9 16 16 H 1.48505 * 109.47064 * 239.99509 * 13 11 9 17 17 N 1.46899 * 109.46970 * 239.99918 * 2 1 3 18 18 C 1.47902 * 110.99661 * 175.07219 * 17 2 1 19 19 C 1.53994 * 107.05502 * 214.15436 * 18 17 2 20 20 C 1.54594 * 105.14047 * 1.22642 * 19 18 17 21 21 H 1.09004 * 110.72136 * 263.59539 * 20 19 18 22 22 C 1.53006 * 110.72185 * 140.49592 * 20 19 18 23 23 C 1.50695 * 109.47210 * 66.45267 * 22 20 19 24 24 N 1.34778 * 119.99720 * 179.97438 * 23 22 20 25 25 O 1.21277 * 120.00637 * 359.97438 * 23 22 20 26 26 C 1.48534 * 111.00131 * 57.67657 * 17 2 1 27 27 H 1.08991 * 109.47576 * 60.00162 * 1 2 3 28 28 H 1.09008 * 109.46859 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47167 * 299.99660 * 1 2 3 30 30 H 1.09000 * 109.47382 * 90.00496 * 7 6 4 31 31 H 1.09008 * 109.47061 * 210.00092 * 7 6 4 32 32 H 1.08997 * 109.47305 * 330.00179 * 7 6 4 33 33 H 1.08997 * 109.47125 * 209.99843 * 8 6 4 34 34 H 1.08998 * 109.46693 * 329.99605 * 8 6 4 35 35 H 0.97009 * 120.00341 * 180.02562 * 12 11 9 36 36 H 1.08997 * 109.92337 * 333.50703 * 18 17 2 37 37 H 1.09005 * 109.91860 * 94.80586 * 18 17 2 38 38 H 1.09002 * 110.30946 * 120.14504 * 19 18 17 39 39 H 1.09007 * 110.30968 * 242.20548 * 19 18 17 40 40 H 1.09004 * 109.46938 * 186.45721 * 22 20 19 41 41 H 1.09002 * 109.46508 * 306.45106 * 22 20 19 42 42 H 0.97004 * 120.00154 * 0.02562 * 24 23 22 43 43 H 0.97003 * 120.00256 * 179.97438 * 24 23 22 44 44 H 1.08999 * 110.66425 * 278.15406 * 26 17 2 45 45 H 1.09002 * 110.66374 * 41.28293 * 26 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 2.3683 -1.8739 1.1643 6 7 2.1082 -0.0528 2.4045 7 6 1.7029 1.3527 2.4843 8 6 2.5972 -0.7432 3.6006 9 6 4.0918 -0.5785 3.7000 10 1 4.6243 -0.0156 2.9477 11 6 4.7795 -1.1466 4.7513 12 7 4.1311 -1.8317 5.6676 13 14 6.6321 -0.9419 4.8749 14 1 7.1185 -0.1335 3.7281 15 1 6.9704 -0.2523 6.1459 16 1 7.2806 -2.2776 4.8487 17 7 2.0196 -0.6925 -1.1994 18 6 3.4933 -0.6103 -1.2943 19 6 3.8455 -0.5251 -2.7911 20 6 2.4858 -0.5322 -3.5268 21 1 2.2330 -1.5388 -3.8602 22 6 2.5049 0.4388 -4.7091 23 6 3.4732 -0.0580 -5.7515 24 7 3.6560 0.6413 -6.8891 25 8 4.0879 -1.0871 -5.5670 26 6 1.4980 -0.0522 -2.4340 27 1 -0.3634 0.5137 -0.8899 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 0.6422 1.4117 2.7284 31 1 2.2825 1.8546 3.2591 32 1 1.8823 1.8377 1.5248 33 1 2.1249 -0.3160 4.4852 34 1 2.3521 -1.8032 3.5339 35 1 4.6149 -2.2311 6.4075 36 1 3.8497 0.2808 -0.7777 37 1 3.9439 -1.5014 -0.8571 38 1 4.3844 0.3989 -3.0009 39 1 4.4431 -1.3867 -3.0888 40 1 1.5067 0.5038 -5.1420 41 1 2.8164 1.4248 -4.3644 42 1 3.1647 1.4646 -7.0366 43 1 4.2795 0.3218 -7.5600 44 1 0.4874 -0.3991 -2.6497 45 1 1.5221 1.0338 -2.3437 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000367990403.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:23 Heat of formation + Delta-G solvation = -67.932927 kcal Electronic energy + Delta-G solvation = -24899.776538 eV Core-core repulsion = 21338.200006 eV Total energy + Delta-G solvation = -3561.576532 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.21474 -39.41795 -37.87032 -34.70640 -34.00195 -33.92136 -32.52174 -30.99752 -28.66769 -27.59713 -27.01287 -25.78097 -23.92017 -22.27437 -21.32591 -20.69039 -20.00488 -18.20080 -17.57731 -16.91059 -16.73719 -16.41565 -16.02758 -15.74008 -15.00479 -14.75592 -14.46370 -14.07505 -13.94584 -13.64674 -13.30864 -12.98210 -12.74391 -12.46931 -12.29729 -12.16477 -12.01768 -11.88709 -11.60608 -11.38561 -11.15399 -11.09257 -11.03256 -10.85942 -10.74650 -10.55213 -10.46703 -10.12206 -10.11313 -9.98205 -9.56518 -8.74886 -8.40635 -8.11381 -7.56691 -6.01011 -4.05538 2.39772 3.20285 3.31815 3.39378 3.42453 3.51510 3.80720 4.21571 4.44684 4.48571 4.61391 4.74021 4.87533 5.09306 5.19387 5.23480 5.27959 5.32661 5.33936 5.35568 5.40031 5.63266 5.71170 5.77031 5.81750 5.83361 5.93488 5.97631 6.16889 6.17957 6.31167 6.31496 6.44987 6.51599 6.98907 7.00534 7.07822 7.22436 7.49974 7.60985 7.96102 7.99477 8.27587 8.49579 8.95215 9.21316 9.59737 11.07061 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.018640 B = 0.003567 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.768093 B = 7848.623598 C = 8855.361301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.054 3.946 3 H 0.058 0.942 4 C 0.509 3.491 5 O -0.519 6.519 6 N -0.605 5.605 7 C 0.083 3.917 8 C 0.246 3.754 9 C -0.524 4.524 10 H 0.056 0.944 11 C 0.060 3.940 12 N -0.895 5.895 13 Si 0.897 3.103 14 H -0.274 1.274 15 H -0.284 1.284 16 H -0.282 1.282 17 N -0.490 5.490 18 C 0.037 3.963 19 C -0.117 4.117 20 C -0.076 4.076 21 H 0.092 0.908 22 C -0.134 4.134 23 C 0.514 3.486 24 N -0.862 5.862 25 O -0.533 6.533 26 C 0.040 3.960 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.044 0.956 31 H 0.073 0.927 32 H 0.054 0.946 33 H 0.031 0.969 34 H 0.044 0.956 35 H 0.262 0.738 36 H 0.040 0.960 37 H 0.090 0.910 38 H 0.058 0.942 39 H 0.080 0.920 40 H 0.096 0.904 41 H 0.094 0.906 42 H 0.400 0.600 43 H 0.399 0.601 44 H 0.083 0.917 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.523 11.843 -21.808 25.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.058 4.058 3 H 0.076 0.924 4 C 0.294 3.706 5 O -0.394 6.394 6 N -0.339 5.339 7 C -0.061 4.061 8 C 0.127 3.873 9 C -0.563 4.563 10 H 0.074 0.926 11 C -0.141 4.141 12 N -0.534 5.534 13 Si 0.725 3.275 14 H -0.199 1.199 15 H -0.210 1.210 16 H -0.208 1.208 17 N -0.215 5.215 18 C -0.090 4.090 19 C -0.155 4.155 20 C -0.095 4.095 21 H 0.110 0.890 22 C -0.174 4.174 23 C 0.299 3.701 24 N -0.426 5.426 25 O -0.408 6.408 26 C -0.088 4.088 27 H 0.079 0.921 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.062 0.938 31 H 0.091 0.909 32 H 0.073 0.927 33 H 0.049 0.951 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.058 0.942 37 H 0.108 0.892 38 H 0.077 0.923 39 H 0.099 0.901 40 H 0.114 0.886 41 H 0.112 0.888 42 H 0.228 0.772 43 H 0.230 0.770 44 H 0.101 0.899 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -7.179 9.869 -21.266 24.519 hybrid contribution 1.366 1.495 -0.183 2.034 sum -5.813 11.364 -21.449 24.960 Atomic orbital electron populations 1.21740 0.92471 1.03430 1.01922 1.21905 0.97076 0.95814 0.90967 0.92449 1.20030 0.79267 0.87412 0.83882 1.90674 1.47838 1.16504 1.84418 1.48162 1.63722 1.11140 1.10849 1.21671 0.99115 0.83553 1.01799 1.19267 0.94093 0.93704 0.80234 1.21461 0.92504 1.33491 1.08804 0.92554 1.24934 0.98629 0.94984 0.95590 1.69942 1.35785 1.34799 1.12875 0.86458 0.85348 0.77985 0.77718 1.19853 1.20996 1.20832 1.64561 1.06755 1.50306 0.99885 1.22910 0.88054 1.02108 0.95964 1.22418 0.96749 1.02419 0.93890 1.21817 0.95747 0.99394 0.92552 0.88957 1.21719 0.99423 1.00946 0.95317 1.20758 0.82851 0.83806 0.82647 1.43948 1.48260 1.28873 1.21533 1.90781 1.48122 1.23943 1.78003 1.23285 0.98962 0.96617 0.89891 0.92064 0.91124 0.91670 0.93770 0.90860 0.92713 0.95091 0.93840 0.92796 0.94170 0.89187 0.92326 0.90145 0.88600 0.88810 0.77223 0.77024 0.89861 0.93906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.77 8.92 37.16 0.33 -1.44 16 2 C 0.05 0.87 1.47 -68.86 -0.10 0.77 16 3 H 0.06 0.83 6.01 -51.93 -0.31 0.52 16 4 C 0.51 11.02 6.30 -10.99 -0.07 10.95 16 5 O -0.52 -13.74 15.49 5.55 0.09 -13.65 16 6 N -0.61 -13.19 2.86 -182.95 -0.52 -13.72 16 7 C 0.08 1.34 9.70 59.85 0.58 1.92 16 8 C 0.25 6.60 5.16 -5.19 -0.03 6.58 16 9 C -0.52 -15.16 9.39 -34.44 -0.32 -15.48 16 10 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 11 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 12 N -0.89 -27.08 13.29 55.43 0.74 -26.34 16 13 Si 0.90 22.29 29.54 -169.99 -5.02 17.27 16 14 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 15 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 16 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 17 N -0.49 -7.74 4.77 -223.89 -1.07 -8.81 16 18 C 0.04 0.61 5.78 -2.75 -0.02 0.60 16 19 C -0.12 -1.56 5.48 -25.37 -0.14 -1.70 16 20 C -0.08 -0.83 2.65 -88.76 -0.24 -1.07 16 21 H 0.09 1.17 8.04 -51.93 -0.42 0.75 16 22 C -0.13 -0.97 5.12 -27.88 -0.14 -1.11 16 23 C 0.51 4.71 7.89 -10.99 -0.09 4.62 16 24 N -0.86 -4.40 8.87 31.22 0.28 -4.13 16 25 O -0.53 -7.50 15.72 5.56 0.09 -7.42 16 26 C 0.04 0.45 4.76 -1.90 -0.01 0.44 16 27 H 0.06 0.61 6.89 -51.93 -0.36 0.25 16 28 H 0.07 1.01 8.14 -51.92 -0.42 0.59 16 29 H 0.06 0.78 7.24 -51.93 -0.38 0.40 16 30 H 0.04 0.61 7.80 -51.93 -0.41 0.20 16 31 H 0.07 1.21 8.07 -51.92 -0.42 0.79 16 32 H 0.05 0.74 5.90 -51.93 -0.31 0.43 16 33 H 0.03 0.83 8.07 -51.93 -0.42 0.42 16 34 H 0.04 1.32 7.42 -51.93 -0.39 0.93 16 35 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 36 H 0.04 0.67 7.65 -51.93 -0.40 0.27 16 37 H 0.09 1.79 7.79 -51.93 -0.40 1.38 16 38 H 0.06 0.70 7.80 -51.93 -0.41 0.30 16 39 H 0.08 1.21 7.73 -51.93 -0.40 0.81 16 40 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 41 H 0.09 0.53 8.07 -51.93 -0.42 0.11 16 42 H 0.40 0.74 8.83 -40.82 -0.36 0.38 16 43 H 0.40 1.86 8.93 -40.82 -0.36 1.49 16 44 H 0.08 0.83 7.65 -51.93 -0.40 0.43 16 45 H 0.04 0.41 7.93 -51.93 -0.41 -0.01 16 LS Contribution 360.19 15.07 5.43 5.43 Total: -1.00 -37.48 360.19 -7.68 -45.16 By element: Atomic # 1 Polarization: 6.81 SS G_CDS: -7.35 Total: -0.54 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: -0.33 Total: 6.74 kcal Atomic # 7 Polarization: -52.41 SS G_CDS: -0.58 Total: -52.99 kcal Atomic # 8 Polarization: -21.24 SS G_CDS: 0.17 Total: -21.07 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -37.48 -7.68 -45.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367990403.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.772 kcal (2) G-P(sol) polarization free energy of solvation -37.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds