Wall clock time and date at job start Tue Mar 31 2020 03:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47176 * 2 1 4 4 C 1.50704 * 109.47265 * 119.99657 * 2 1 3 5 5 O 1.21284 * 119.99592 * 97.76458 * 4 2 1 6 6 N 1.34768 * 120.00226 * 277.77120 * 4 2 1 7 7 C 1.46500 * 119.99891 * 359.97438 * 6 4 2 8 8 C 1.46505 * 120.00204 * 180.02562 * 6 4 2 9 9 C 1.50696 * 109.47158 * 89.99396 * 8 6 4 10 10 H 1.07997 * 120.00241 * 0.02562 * 9 8 6 11 11 C 1.37876 * 119.99939 * 180.02562 * 9 8 6 12 12 N 1.31509 * 119.99969 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 119.99980 * 180.02562 * 11 9 8 14 14 H 1.48500 * 109.47420 * 359.97438 * 13 11 9 15 15 H 1.48502 * 109.47713 * 119.99761 * 13 11 9 16 16 H 1.48505 * 109.47064 * 239.99509 * 13 11 9 17 17 N 1.46899 * 109.46970 * 239.99918 * 2 1 3 18 18 C 1.47902 * 110.99661 * 175.07219 * 17 2 1 19 19 C 1.53994 * 107.05502 * 214.15436 * 18 17 2 20 20 C 1.54594 * 105.14047 * 1.22642 * 19 18 17 21 21 H 1.09004 * 110.72136 * 263.59539 * 20 19 18 22 22 C 1.53006 * 110.72185 * 140.49592 * 20 19 18 23 23 C 1.50695 * 109.47210 * 66.45267 * 22 20 19 24 24 N 1.34778 * 119.99720 * 179.97438 * 23 22 20 25 25 O 1.21277 * 120.00637 * 359.97438 * 23 22 20 26 26 C 1.48534 * 111.00131 * 57.67657 * 17 2 1 27 27 H 1.08991 * 109.47576 * 60.00162 * 1 2 3 28 28 H 1.09008 * 109.46859 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47167 * 299.99660 * 1 2 3 30 30 H 1.09000 * 109.47382 * 90.00496 * 7 6 4 31 31 H 1.09008 * 109.47061 * 210.00092 * 7 6 4 32 32 H 1.08997 * 109.47305 * 330.00179 * 7 6 4 33 33 H 1.08997 * 109.47125 * 209.99843 * 8 6 4 34 34 H 1.08998 * 109.46693 * 329.99605 * 8 6 4 35 35 H 0.97009 * 120.00341 * 180.02562 * 12 11 9 36 36 H 1.08997 * 109.92337 * 333.50703 * 18 17 2 37 37 H 1.09005 * 109.91860 * 94.80586 * 18 17 2 38 38 H 1.09002 * 110.30946 * 120.14504 * 19 18 17 39 39 H 1.09007 * 110.30968 * 242.20548 * 19 18 17 40 40 H 1.09004 * 109.46938 * 186.45721 * 22 20 19 41 41 H 1.09002 * 109.46508 * 306.45106 * 22 20 19 42 42 H 0.97004 * 120.00154 * 0.02562 * 24 23 22 43 43 H 0.97003 * 120.00256 * 179.97438 * 24 23 22 44 44 H 1.08999 * 110.66425 * 278.15406 * 26 17 2 45 45 H 1.09002 * 110.66374 * 41.28293 * 26 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7103 1.2305 5 8 2.3683 -1.8739 1.1643 6 7 2.1082 -0.0528 2.4045 7 6 1.7029 1.3527 2.4843 8 6 2.5972 -0.7432 3.6006 9 6 4.0918 -0.5785 3.7000 10 1 4.6243 -0.0156 2.9477 11 6 4.7795 -1.1466 4.7513 12 7 4.1311 -1.8317 5.6676 13 14 6.6321 -0.9419 4.8749 14 1 7.1185 -0.1335 3.7281 15 1 6.9704 -0.2523 6.1459 16 1 7.2806 -2.2776 4.8487 17 7 2.0196 -0.6925 -1.1994 18 6 3.4933 -0.6103 -1.2943 19 6 3.8455 -0.5251 -2.7911 20 6 2.4858 -0.5322 -3.5268 21 1 2.2330 -1.5388 -3.8602 22 6 2.5049 0.4388 -4.7091 23 6 3.4732 -0.0580 -5.7515 24 7 3.6560 0.6413 -6.8891 25 8 4.0879 -1.0871 -5.5670 26 6 1.4980 -0.0522 -2.4340 27 1 -0.3634 0.5137 -0.8899 28 1 -0.3633 -1.0278 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 0.6422 1.4117 2.7284 31 1 2.2825 1.8546 3.2591 32 1 1.8823 1.8377 1.5248 33 1 2.1249 -0.3160 4.4852 34 1 2.3521 -1.8032 3.5339 35 1 4.6149 -2.2311 6.4075 36 1 3.8497 0.2808 -0.7777 37 1 3.9439 -1.5014 -0.8571 38 1 4.3844 0.3989 -3.0009 39 1 4.4431 -1.3867 -3.0888 40 1 1.5067 0.5038 -5.1420 41 1 2.8164 1.4248 -4.3644 42 1 3.1647 1.4646 -7.0366 43 1 4.2795 0.3218 -7.5600 44 1 0.4874 -0.3991 -2.6497 45 1 1.5221 1.0338 -2.3437 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000367990403.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:19:23 Heat of formation + Delta-G solvation = -99.611160 kcal Electronic energy + Delta-G solvation = -24901.150209 eV Core-core repulsion = 21338.200006 eV Total energy + Delta-G solvation = -3562.950204 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.33128 -40.53046 -39.13670 -36.54428 -35.22242 -34.61020 -34.49690 -32.01066 -30.14399 -29.19271 -27.88346 -27.32296 -25.64120 -23.76472 -22.31085 -21.80210 -20.83523 -19.70676 -18.72612 -18.19231 -18.10786 -17.63517 -17.20232 -16.96235 -16.57410 -16.00152 -15.90364 -15.61753 -14.92164 -14.90282 -14.47618 -14.34576 -14.09024 -13.73995 -13.60049 -13.47404 -13.32504 -13.11954 -13.00932 -12.94060 -12.78275 -12.60959 -12.37963 -12.24571 -12.15956 -12.01730 -11.74103 -11.67205 -11.51255 -10.88473 -10.67416 -10.55840 -10.43660 -9.40455 -9.28660 -8.24739 -6.39680 1.32548 1.36034 1.47217 1.75993 1.86173 2.26521 2.39193 2.70113 3.02317 3.04429 3.58942 3.68208 3.80966 3.90070 4.00576 4.15510 4.21989 4.23992 4.46467 4.46989 4.62437 4.66068 4.68968 4.75354 4.81717 4.85157 4.88183 4.94610 4.97014 5.00750 5.10363 5.20375 5.22255 5.30016 5.40470 5.54459 5.82171 5.90741 5.98059 6.04601 6.08700 6.57649 6.68790 6.82235 7.26961 7.46943 7.54809 8.82482 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.018640 B = 0.003567 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.768093 B = 7848.623598 C = 8855.361301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.068 3.932 3 H 0.086 0.914 4 C 0.497 3.503 5 O -0.585 6.585 6 N -0.613 5.613 7 C 0.077 3.923 8 C 0.261 3.739 9 C -0.540 4.540 10 H 0.050 0.950 11 C 0.007 3.993 12 N -0.928 5.928 13 Si 0.967 3.033 14 H -0.268 1.268 15 H -0.265 1.265 16 H -0.283 1.283 17 N -0.520 5.520 18 C 0.041 3.959 19 C -0.108 4.108 20 C -0.071 4.071 21 H 0.066 0.934 22 C -0.123 4.123 23 C 0.507 3.493 24 N -0.842 5.842 25 O -0.595 6.595 26 C 0.046 3.954 27 H 0.104 0.896 28 H 0.047 0.953 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.090 0.910 33 H 0.025 0.975 34 H -0.007 1.007 35 H 0.267 0.733 36 H 0.037 0.963 37 H 0.034 0.966 38 H 0.077 0.923 39 H 0.050 0.950 40 H 0.133 0.867 41 H 0.123 0.877 42 H 0.419 0.581 43 H 0.403 0.597 44 H 0.102 0.898 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.654 15.778 -24.025 30.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.044 4.044 3 H 0.103 0.897 4 C 0.285 3.715 5 O -0.464 6.464 6 N -0.345 5.345 7 C -0.065 4.065 8 C 0.139 3.861 9 C -0.579 4.579 10 H 0.068 0.932 11 C -0.192 4.192 12 N -0.568 5.568 13 Si 0.791 3.209 14 H -0.193 1.193 15 H -0.190 1.190 16 H -0.209 1.209 17 N -0.246 5.246 18 C -0.087 4.087 19 C -0.146 4.146 20 C -0.090 4.090 21 H 0.085 0.915 22 C -0.163 4.163 23 C 0.293 3.707 24 N -0.405 5.405 25 O -0.476 6.476 26 C -0.080 4.080 27 H 0.123 0.877 28 H 0.066 0.934 29 H 0.096 0.904 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.109 0.891 33 H 0.043 0.957 34 H 0.011 0.989 35 H 0.076 0.924 36 H 0.055 0.945 37 H 0.053 0.947 38 H 0.096 0.904 39 H 0.069 0.931 40 H 0.151 0.849 41 H 0.141 0.859 42 H 0.251 0.749 43 H 0.233 0.767 44 H 0.121 0.879 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -8.360 13.911 -23.530 28.584 hybrid contribution 1.683 0.246 0.483 1.768 sum -6.677 14.158 -23.047 27.860 Atomic orbital electron populations 1.21779 0.89581 1.02899 1.04685 1.21863 0.98982 0.95698 0.87828 0.89704 1.21263 0.77915 0.87001 0.85339 1.90637 1.50594 1.19631 1.85529 1.48204 1.63370 1.13383 1.09534 1.21995 1.00742 0.80038 1.03727 1.18718 0.93483 0.91510 0.82389 1.21702 0.93672 1.33729 1.08807 0.93199 1.25865 1.03805 0.94411 0.95134 1.70056 1.37877 1.35417 1.13464 0.85378 0.79001 0.77972 0.78512 1.19260 1.18978 1.20873 1.64439 1.06025 1.52364 1.01737 1.22716 0.89044 0.99244 0.97681 1.22312 0.98335 1.02006 0.91986 1.21735 0.93742 0.99574 0.93963 0.91507 1.21703 1.00935 1.00564 0.93095 1.21202 0.82564 0.83165 0.83731 1.43791 1.47598 1.28922 1.20236 1.90777 1.50651 1.26762 1.79399 1.23420 0.99355 0.98342 0.86927 0.87693 0.93372 0.90441 0.90677 0.91578 0.89120 0.95675 0.98872 0.92364 0.94466 0.94697 0.90393 0.93141 0.84924 0.85941 0.74940 0.76666 0.87937 0.90422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.93 8.92 71.98 0.64 -2.28 16 2 C 0.07 2.03 1.47 44.17 0.06 2.10 16 3 H 0.09 2.08 6.01 -2.39 -0.01 2.06 16 4 C 0.50 22.06 6.30 87.66 0.55 22.61 16 5 O -0.58 -33.14 15.49 -3.04 -0.05 -33.19 16 6 N -0.61 -27.11 2.86 -851.13 -2.43 -29.54 16 7 C 0.08 2.31 9.70 127.77 1.24 3.55 16 8 C 0.26 14.69 5.16 85.63 0.44 15.13 16 9 C -0.54 -32.42 9.39 25.60 0.24 -32.18 16 10 H 0.05 2.98 7.81 -2.91 -0.02 2.96 16 11 C 0.01 0.40 5.46 84.66 0.46 0.86 16 12 N -0.93 -57.89 13.29 21.45 0.28 -57.61 16 13 Si 0.97 46.53 29.54 68.60 2.03 48.55 16 14 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 15 H -0.26 -11.89 7.11 99.48 0.71 -11.19 16 16 H -0.28 -13.57 7.11 99.48 0.71 -12.86 16 17 N -0.52 -15.97 4.77 -862.24 -4.12 -20.09 16 18 C 0.04 1.41 5.78 86.45 0.50 1.91 16 19 C -0.11 -2.91 5.48 31.47 0.17 -2.74 16 20 C -0.07 -1.41 2.65 -9.59 -0.03 -1.44 16 21 H 0.07 1.68 8.04 -2.38 -0.02 1.66 16 22 C -0.12 -1.26 5.12 29.85 0.15 -1.10 16 23 C 0.51 8.16 7.89 87.66 0.69 8.86 16 24 N -0.84 -6.08 8.87 -173.54 -1.54 -7.62 16 25 O -0.60 -16.85 15.72 -3.02 -0.05 -16.90 16 26 C 0.05 0.84 4.76 86.65 0.41 1.25 16 27 H 0.10 1.45 6.89 -2.39 -0.02 1.43 16 28 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 29 H 0.08 1.54 7.24 -2.39 -0.02 1.52 16 30 H 0.07 1.82 7.80 -2.39 -0.02 1.80 16 31 H 0.07 2.09 8.07 -2.38 -0.02 2.07 16 32 H 0.09 2.07 5.90 -2.39 -0.01 2.05 16 33 H 0.03 1.42 8.07 -2.39 -0.02 1.40 16 34 H -0.01 -0.45 7.42 -2.39 -0.02 -0.47 16 35 H 0.27 15.55 8.31 -92.70 -0.77 14.78 16 36 H 0.04 1.24 7.65 -2.39 -0.02 1.22 16 37 H 0.03 1.53 7.79 -2.38 -0.02 1.51 16 38 H 0.08 1.76 7.80 -2.39 -0.02 1.74 16 39 H 0.05 1.64 7.73 -2.38 -0.02 1.62 16 40 H 0.13 0.46 8.14 -2.38 -0.02 0.44 16 41 H 0.12 0.64 8.07 -2.39 -0.02 0.62 16 42 H 0.42 -0.21 8.83 -92.71 -0.82 -1.02 16 43 H 0.40 2.87 8.93 -92.71 -0.83 2.04 16 44 H 0.10 1.54 7.65 -2.39 -0.02 1.52 16 45 H 0.08 0.95 7.93 -2.39 -0.02 0.93 16 Total: -1.00 -91.61 360.19 -0.97 -92.58 By element: Atomic # 1 Polarization: 7.93 SS G_CDS: -0.64 Total: 7.29 kcal Atomic # 6 Polarization: 10.98 SS G_CDS: 5.55 Total: 16.53 kcal Atomic # 7 Polarization: -107.06 SS G_CDS: -7.80 Total: -114.86 kcal Atomic # 8 Polarization: -50.00 SS G_CDS: -0.09 Total: -50.09 kcal Atomic # 14 Polarization: 46.53 SS G_CDS: 2.03 Total: 48.55 kcal Total: -91.61 -0.97 -92.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367990403.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.030 kcal (2) G-P(sol) polarization free energy of solvation -91.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds