Wall clock time and date at job start Tue Mar 31 2020 03:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 109.47231 * 2 1 4 4 C 1.46497 * 120.00160 * 89.99836 * 3 2 1 5 5 C 1.50694 * 109.47115 * 270.00206 * 4 3 2 6 6 H 1.08000 * 120.00563 * 359.97438 * 5 4 3 7 7 C 1.37885 * 119.99902 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99913 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99766 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46985 * 179.97438 * 9 7 5 11 11 H 1.48494 * 109.47276 * 299.99832 * 9 7 5 12 12 H 1.48498 * 109.47150 * 60.00043 * 9 7 5 13 13 C 1.34780 * 120.00033 * 270.00095 * 3 2 1 14 14 O 1.21283 * 120.00111 * 180.02562 * 13 3 2 15 15 C 1.50707 * 120.00018 * 359.97438 * 13 3 2 16 16 N 1.46899 * 109.47176 * 180.02562 * 15 13 3 17 17 C 1.48525 * 111.00147 * 52.60521 * 16 15 13 18 18 C 1.54934 * 103.22880 * 159.72153 * 17 16 15 19 19 C 1.54602 * 102.91912 * 322.58438 * 18 17 16 20 20 H 1.08993 * 110.31001 * 263.03842 * 19 18 17 21 21 C 1.52999 * 110.30492 * 140.87101 * 19 18 17 22 22 C 1.50705 * 109.47065 * 69.28815 * 21 19 18 23 23 N 1.34774 * 120.00328 * 179.97438 * 22 21 19 24 24 O 1.21287 * 119.99787 * 359.97438 * 22 21 19 25 25 C 1.47904 * 110.99872 * 170.00541 * 16 15 13 26 26 H 1.08994 * 109.47064 * 300.00194 * 1 2 3 27 27 H 1.09000 * 109.47180 * 60.00481 * 1 2 3 28 28 H 1.09001 * 109.46999 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46887 * 239.99795 * 2 1 3 30 30 H 1.08995 * 109.47263 * 120.00007 * 2 1 3 31 31 H 1.09007 * 109.47078 * 149.99845 * 4 3 2 32 32 H 1.09003 * 109.46733 * 30.00568 * 4 3 2 33 33 H 0.97001 * 119.99646 * 179.97438 * 8 7 5 34 34 H 1.09000 * 109.47158 * 300.00755 * 15 13 3 35 35 H 1.09008 * 109.46644 * 60.00137 * 15 13 3 36 36 H 1.09000 * 110.66636 * 278.15878 * 17 16 15 37 37 H 1.08998 * 110.66760 * 41.28572 * 17 16 15 38 38 H 1.09004 * 110.72305 * 204.22929 * 18 17 16 39 39 H 1.08997 * 110.87778 * 81.01256 * 18 17 16 40 40 H 1.08995 * 109.47051 * 189.28023 * 21 19 18 41 41 H 1.08991 * 109.47441 * 309.28681 * 21 19 18 42 42 H 0.97009 * 119.99655 * 0.02562 * 23 22 21 43 43 H 0.96996 * 120.00419 * 179.97438 * 23 22 21 44 44 H 1.09006 * 109.91356 * 333.50576 * 25 16 15 45 45 H 1.08994 * 109.91698 * 94.60436 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 1.2687 5 6 1.0067 2.7822 1.7037 6 1 0.1159 2.7253 1.0957 7 6 0.9953 3.5057 2.8774 8 7 2.0802 3.5754 3.6175 9 14 -0.5612 4.3868 3.4162 10 1 -0.3137 5.0868 4.7024 11 1 -0.9534 5.3765 2.3809 12 1 -1.6539 3.3972 3.5941 13 6 2.2430 2.0165 -1.1672 14 8 2.6477 3.1598 -1.1672 15 6 1.9923 1.3059 -2.4724 16 7 2.3110 2.2058 -3.5889 17 6 3.6782 2.7681 -3.4459 18 6 4.0275 3.2215 -4.8856 19 6 3.3946 2.1146 -5.7598 20 1 4.1449 1.3725 -6.0324 21 6 2.7674 2.7233 -7.0155 22 6 3.8562 3.2331 -7.9242 23 7 3.5375 3.8136 -9.0981 24 8 5.0193 3.1210 -7.5992 25 6 2.3077 1.4759 -4.8754 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.0645 2.7985 1.1383 32 1 2.5507 1.3451 2.0283 33 1 2.0722 4.0847 4.4430 34 1 2.6228 0.4186 -2.5299 35 1 0.9444 1.0114 -2.5303 36 1 3.6748 3.6190 -2.7647 37 1 4.3750 2.0030 -3.1038 38 1 5.1077 3.2551 -5.0280 39 1 3.5804 4.1906 -5.1069 40 1 2.1860 1.9627 -7.5365 41 1 2.1146 3.5488 -6.7320 42 1 2.6072 3.9036 -9.3578 43 1 4.2383 4.1421 -9.6828 44 1 2.5376 0.4239 -4.7060 45 1 1.3328 1.5705 -5.3535 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000367990892.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:18 Heat of formation + Delta-G solvation = -69.662774 kcal Electronic energy + Delta-G solvation = -24658.116113 eV Core-core repulsion = 21096.464569 eV Total energy + Delta-G solvation = -3561.651544 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.14476 -39.34509 -37.87407 -35.24934 -33.92976 -33.26068 -32.62121 -29.97398 -29.88609 -28.15155 -26.93929 -25.25816 -22.73421 -22.53481 -21.35753 -20.96092 -19.92555 -18.31267 -17.70431 -16.91187 -16.56163 -16.34721 -15.97682 -15.44363 -14.98950 -14.85589 -14.62928 -14.17315 -13.71972 -13.68051 -13.31456 -13.13463 -12.82964 -12.57307 -12.16368 -12.13313 -12.01613 -11.68972 -11.44293 -11.20425 -11.16425 -11.08606 -10.85718 -10.75120 -10.67462 -10.48690 -10.44899 -10.11402 -10.00025 -9.95412 -9.53412 -8.73242 -8.38941 -8.15527 -7.60743 -6.00135 -4.03901 2.42901 3.26420 3.34268 3.38874 3.40398 3.48306 3.81251 4.32112 4.45966 4.48802 4.61499 4.74921 4.97230 5.09399 5.28081 5.32362 5.34757 5.37160 5.45048 5.46886 5.58375 5.62614 5.68014 5.81370 5.87244 5.87727 6.01829 6.14064 6.22651 6.31838 6.34756 6.48185 6.57901 6.78644 7.02367 7.03526 7.09978 7.20738 7.48756 7.61847 7.96813 8.01926 8.28588 8.47236 8.95701 9.17056 9.60699 11.08074 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.024031 B = 0.003086 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.882367 B = 9071.748904 C = 9477.870855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.111 3.889 3 N -0.599 5.599 4 C 0.247 3.753 5 C -0.521 4.521 6 H 0.058 0.942 7 C 0.060 3.940 8 N -0.897 5.897 9 Si 0.896 3.104 10 H -0.287 1.287 11 H -0.276 1.276 12 H -0.278 1.278 13 C 0.506 3.494 14 O -0.526 6.526 15 C 0.028 3.972 16 N -0.499 5.499 17 C 0.032 3.968 18 C -0.113 4.113 19 C -0.083 4.083 20 H 0.081 0.919 21 C -0.132 4.132 22 C 0.515 3.485 23 N -0.861 5.861 24 O -0.539 6.539 25 C 0.038 3.962 26 H 0.076 0.924 27 H 0.049 0.951 28 H 0.052 0.948 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.042 0.958 32 H 0.030 0.970 33 H 0.263 0.737 34 H 0.055 0.945 35 H 0.098 0.902 36 H 0.116 0.884 37 H 0.035 0.965 38 H 0.074 0.926 39 H 0.068 0.932 40 H 0.093 0.907 41 H 0.100 0.900 42 H 0.401 0.599 43 H 0.399 0.601 44 H 0.044 0.956 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.078 -6.913 -22.214 23.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.013 4.013 3 N -0.332 5.332 4 C 0.128 3.872 5 C -0.560 4.560 6 H 0.076 0.924 7 C -0.142 4.142 8 N -0.536 5.536 9 Si 0.724 3.276 10 H -0.213 1.213 11 H -0.202 1.202 12 H -0.203 1.203 13 C 0.292 3.708 14 O -0.403 6.403 15 C -0.104 4.104 16 N -0.223 5.223 17 C -0.095 4.095 18 C -0.151 4.151 19 C -0.103 4.103 20 H 0.100 0.900 21 C -0.173 4.173 22 C 0.301 3.699 23 N -0.425 5.425 24 O -0.415 6.415 25 C -0.090 4.090 26 H 0.095 0.905 27 H 0.068 0.932 28 H 0.071 0.929 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.060 0.940 32 H 0.048 0.952 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.116 0.884 36 H 0.134 0.866 37 H 0.054 0.946 38 H 0.093 0.907 39 H 0.087 0.913 40 H 0.111 0.889 41 H 0.119 0.881 42 H 0.229 0.771 43 H 0.229 0.771 44 H 0.062 0.938 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.484 -5.989 -21.601 22.421 hybrid contribution -0.663 -0.131 -0.018 0.676 sum -1.147 -6.119 -21.619 22.497 Atomic orbital electron populations 1.22230 0.96313 1.00828 1.03442 1.21380 0.94608 0.83813 1.01500 1.48267 1.64076 1.13161 1.07713 1.19266 0.97503 0.92408 0.77992 1.21410 0.97511 1.30985 1.06076 0.92362 1.24938 0.96421 0.96309 0.96503 1.69924 1.27505 1.41725 1.14421 0.86587 0.83275 0.79932 0.77796 1.21263 1.20174 1.20320 1.20103 0.78863 0.86968 0.84842 1.90597 1.45621 1.17405 1.86650 1.22332 1.02621 0.94457 0.90961 1.64655 1.27718 1.29846 1.00111 1.23544 0.87413 1.01192 0.97332 1.22567 1.00829 0.97768 0.93931 1.21765 0.96870 0.98344 0.93295 0.90050 1.21795 0.97196 1.02427 0.95837 1.20827 0.90684 0.76770 0.81646 1.43946 1.12227 1.64168 1.22179 1.90754 1.20836 1.56159 1.73735 1.22999 0.99075 0.95955 0.91015 0.90532 0.93213 0.92885 0.92266 0.90746 0.93960 0.95179 0.92744 0.92706 0.88413 0.86606 0.94646 0.90692 0.91283 0.88881 0.88126 0.77131 0.77094 0.93790 0.90293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.59 10.24 37.16 0.38 -2.20 16 2 C 0.11 1.78 5.98 -4.04 -0.02 1.76 16 3 N -0.60 -12.67 2.46 -175.06 -0.43 -13.10 16 4 C 0.25 6.47 5.20 -5.20 -0.03 6.45 16 5 C -0.52 -14.71 8.92 -34.44 -0.31 -15.02 16 6 H 0.06 1.64 7.42 -52.49 -0.39 1.25 16 7 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 8 N -0.90 -26.83 13.29 55.43 0.74 -26.09 16 9 Si 0.90 22.04 29.54 -169.99 -5.02 17.02 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 12 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 13 C 0.51 10.59 7.38 -10.98 -0.08 10.51 16 14 O -0.53 -13.14 13.10 5.56 0.07 -13.07 16 15 C 0.03 0.43 4.07 -4.97 -0.02 0.41 16 16 N -0.50 -7.64 5.26 -231.89 -1.22 -8.86 16 17 C 0.03 0.52 5.30 -1.90 -0.01 0.51 16 18 C -0.11 -1.52 5.70 -24.87 -0.14 -1.66 16 19 C -0.08 -0.91 2.60 -89.26 -0.23 -1.14 16 20 H 0.08 0.93 7.91 -51.93 -0.41 0.52 16 21 C -0.13 -1.05 4.87 -27.88 -0.14 -1.19 16 22 C 0.52 4.87 7.90 -10.98 -0.09 4.78 16 23 N -0.86 -4.74 8.87 31.22 0.28 -4.46 16 24 O -0.54 -7.50 15.85 5.55 0.09 -7.41 16 25 C 0.04 0.42 6.35 -2.75 -0.02 0.41 16 26 H 0.08 1.40 7.26 -51.93 -0.38 1.03 16 27 H 0.05 0.74 7.22 -51.93 -0.38 0.37 16 28 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.76 6.44 -51.93 -0.33 0.43 16 30 H 0.07 1.17 7.89 -51.93 -0.41 0.76 16 31 H 0.04 1.25 7.42 -51.92 -0.39 0.87 16 32 H 0.03 0.80 7.89 -51.93 -0.41 0.39 16 33 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 34 H 0.06 0.75 7.07 -51.93 -0.37 0.38 16 35 H 0.10 1.39 7.19 -51.92 -0.37 1.01 16 36 H 0.12 2.27 5.97 -51.93 -0.31 1.96 16 37 H 0.04 0.57 8.02 -51.93 -0.42 0.16 16 38 H 0.07 1.06 7.85 -51.93 -0.41 0.65 16 39 H 0.07 0.94 7.76 -51.93 -0.40 0.53 16 40 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.10 0.75 7.99 -51.93 -0.42 0.33 16 42 H 0.40 0.98 8.83 -40.82 -0.36 0.62 16 43 H 0.40 1.95 8.93 -40.82 -0.36 1.58 16 44 H 0.04 0.45 7.57 -51.93 -0.39 0.06 16 45 H 0.08 0.76 7.69 -51.93 -0.40 0.36 16 LS Contribution 358.57 15.07 5.40 5.40 Total: -1.00 -35.68 358.57 -8.17 -43.86 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: -7.28 Total: 1.48 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: -0.80 Total: 5.24 kcal Atomic # 7 Polarization: -51.88 SS G_CDS: -0.64 Total: -52.52 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: 0.16 Total: -20.48 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -35.68 -8.17 -43.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367990892.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.806 kcal (2) G-P(sol) polarization free energy of solvation -35.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.857 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds