Wall clock time and date at job start Tue Mar 31 2020 03:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46497 * 109.47231 * 2 1 4 4 C 1.46497 * 120.00160 * 89.99836 * 3 2 1 5 5 C 1.50694 * 109.47115 * 270.00206 * 4 3 2 6 6 H 1.08000 * 120.00563 * 359.97438 * 5 4 3 7 7 C 1.37885 * 119.99902 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99913 * 359.97438 * 7 5 4 9 9 Si 1.86798 * 119.99766 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.46985 * 179.97438 * 9 7 5 11 11 H 1.48494 * 109.47276 * 299.99832 * 9 7 5 12 12 H 1.48498 * 109.47150 * 60.00043 * 9 7 5 13 13 C 1.34780 * 120.00033 * 270.00095 * 3 2 1 14 14 O 1.21283 * 120.00111 * 180.02562 * 13 3 2 15 15 C 1.50707 * 120.00018 * 359.97438 * 13 3 2 16 16 N 1.46899 * 109.47176 * 180.02562 * 15 13 3 17 17 C 1.48525 * 111.00147 * 52.60521 * 16 15 13 18 18 C 1.54934 * 103.22880 * 159.72153 * 17 16 15 19 19 C 1.54602 * 102.91912 * 322.58438 * 18 17 16 20 20 H 1.08993 * 110.31001 * 263.03842 * 19 18 17 21 21 C 1.52999 * 110.30492 * 140.87101 * 19 18 17 22 22 C 1.50705 * 109.47065 * 69.28815 * 21 19 18 23 23 N 1.34774 * 120.00328 * 179.97438 * 22 21 19 24 24 O 1.21287 * 119.99787 * 359.97438 * 22 21 19 25 25 C 1.47904 * 110.99872 * 170.00541 * 16 15 13 26 26 H 1.08994 * 109.47064 * 300.00194 * 1 2 3 27 27 H 1.09000 * 109.47180 * 60.00481 * 1 2 3 28 28 H 1.09001 * 109.46999 * 179.97438 * 1 2 3 29 29 H 1.09004 * 109.46887 * 239.99795 * 2 1 3 30 30 H 1.08995 * 109.47263 * 120.00007 * 2 1 3 31 31 H 1.09007 * 109.47078 * 149.99845 * 4 3 2 32 32 H 1.09003 * 109.46733 * 30.00568 * 4 3 2 33 33 H 0.97001 * 119.99646 * 179.97438 * 8 7 5 34 34 H 1.09000 * 109.47158 * 300.00755 * 15 13 3 35 35 H 1.09008 * 109.46644 * 60.00137 * 15 13 3 36 36 H 1.09000 * 110.66636 * 278.15878 * 17 16 15 37 37 H 1.08998 * 110.66760 * 41.28572 * 17 16 15 38 38 H 1.09004 * 110.72305 * 204.22929 * 18 17 16 39 39 H 1.08997 * 110.87778 * 81.01256 * 18 17 16 40 40 H 1.08995 * 109.47051 * 189.28023 * 21 19 18 41 41 H 1.08991 * 109.47441 * 309.28681 * 21 19 18 42 42 H 0.97009 * 119.99655 * 0.02562 * 23 22 21 43 43 H 0.96996 * 120.00419 * 179.97438 * 23 22 21 44 44 H 1.09006 * 109.91356 * 333.50576 * 25 16 15 45 45 H 1.08994 * 109.91698 * 94.60436 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2625 2.0718 1.2687 5 6 1.0067 2.7822 1.7037 6 1 0.1159 2.7253 1.0957 7 6 0.9953 3.5057 2.8774 8 7 2.0802 3.5754 3.6175 9 14 -0.5612 4.3868 3.4162 10 1 -0.3137 5.0868 4.7024 11 1 -0.9534 5.3765 2.3809 12 1 -1.6539 3.3972 3.5941 13 6 2.2430 2.0165 -1.1672 14 8 2.6477 3.1598 -1.1672 15 6 1.9923 1.3059 -2.4724 16 7 2.3110 2.2058 -3.5889 17 6 3.6782 2.7681 -3.4459 18 6 4.0275 3.2215 -4.8856 19 6 3.3946 2.1146 -5.7598 20 1 4.1449 1.3725 -6.0324 21 6 2.7674 2.7233 -7.0155 22 6 3.8562 3.2331 -7.9242 23 7 3.5375 3.8136 -9.0981 24 8 5.0193 3.1210 -7.5992 25 6 2.3077 1.4759 -4.8754 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 3.0645 2.7985 1.1383 32 1 2.5507 1.3451 2.0283 33 1 2.0722 4.0847 4.4430 34 1 2.6228 0.4186 -2.5299 35 1 0.9444 1.0114 -2.5303 36 1 3.6748 3.6190 -2.7647 37 1 4.3750 2.0030 -3.1038 38 1 5.1077 3.2551 -5.0280 39 1 3.5804 4.1906 -5.1069 40 1 2.1860 1.9627 -7.5365 41 1 2.1146 3.5488 -6.7320 42 1 2.6072 3.9036 -9.3578 43 1 4.2383 4.1421 -9.6828 44 1 2.5376 0.4239 -4.7060 45 1 1.3328 1.5705 -5.3535 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000367990892.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:17 Heat of formation + Delta-G solvation = -98.840167 kcal Electronic energy + Delta-G solvation = -24659.381340 eV Core-core repulsion = 21096.464569 eV Total energy + Delta-G solvation = -3562.916771 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.23494 -40.51997 -39.06581 -36.91166 -34.90836 -34.59162 -34.12696 -31.52401 -30.97042 -29.64126 -28.31120 -26.56584 -24.52580 -24.00054 -22.41246 -21.90907 -20.73984 -19.85403 -18.69092 -18.36282 -17.88891 -17.59405 -17.24451 -16.65770 -16.40357 -16.06032 -16.02080 -15.66783 -14.91836 -14.73827 -14.58023 -14.37908 -14.10115 -14.00914 -13.72781 -13.48982 -13.27202 -13.10553 -12.98794 -12.70033 -12.60581 -12.51883 -12.33113 -12.11915 -12.05212 -11.78983 -11.70203 -11.59529 -11.48969 -10.89923 -10.61501 -10.56520 -10.33907 -9.42834 -9.28835 -8.19799 -6.33025 1.36222 1.40864 1.47777 1.74939 1.86663 2.28097 2.43021 2.71575 3.09558 3.12494 3.62099 3.65976 3.88804 3.93267 4.11116 4.22392 4.27398 4.35601 4.40878 4.51461 4.58176 4.63320 4.67924 4.77833 4.82970 4.90674 4.96386 5.03167 5.04784 5.08294 5.17682 5.24236 5.28692 5.34834 5.53829 5.63445 5.87395 5.92367 5.97797 6.07611 6.10315 6.55676 6.74281 6.84913 7.32286 7.44990 7.55955 8.87313 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.024031 B = 0.003086 C = 0.002954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.882367 B = 9071.748904 C = 9477.870855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.104 3.896 3 N -0.606 5.606 4 C 0.263 3.737 5 C -0.531 4.531 6 H 0.056 0.944 7 C 0.004 3.996 8 N -0.932 5.932 9 Si 0.964 3.036 10 H -0.280 1.280 11 H -0.278 1.278 12 H -0.259 1.259 13 C 0.493 3.507 14 O -0.579 6.579 15 C 0.042 3.958 16 N -0.517 5.517 17 C 0.036 3.964 18 C -0.106 4.106 19 C -0.077 4.077 20 H 0.077 0.923 21 C -0.126 4.126 22 C 0.510 3.490 23 N -0.842 5.842 24 O -0.593 6.593 25 C 0.041 3.959 26 H 0.037 0.963 27 H 0.054 0.946 28 H 0.092 0.908 29 H 0.103 0.897 30 H 0.074 0.926 31 H -0.007 1.007 32 H 0.020 0.980 33 H 0.266 0.734 34 H 0.085 0.915 35 H 0.124 0.876 36 H 0.070 0.930 37 H 0.027 0.973 38 H 0.060 0.940 39 H 0.064 0.936 40 H 0.131 0.869 41 H 0.110 0.890 42 H 0.418 0.582 43 H 0.403 0.597 44 H 0.062 0.938 45 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.799 -8.841 -24.725 26.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.019 4.019 3 N -0.338 5.338 4 C 0.141 3.859 5 C -0.570 4.570 6 H 0.074 0.926 7 C -0.194 4.194 8 N -0.572 5.572 9 Si 0.789 3.211 10 H -0.205 1.205 11 H -0.204 1.204 12 H -0.184 1.184 13 C 0.282 3.718 14 O -0.460 6.460 15 C -0.089 4.089 16 N -0.242 5.242 17 C -0.092 4.092 18 C -0.144 4.144 19 C -0.097 4.097 20 H 0.095 0.905 21 C -0.166 4.166 22 C 0.296 3.704 23 N -0.406 5.406 24 O -0.474 6.474 25 C -0.086 4.086 26 H 0.056 0.944 27 H 0.073 0.927 28 H 0.111 0.889 29 H 0.121 0.879 30 H 0.092 0.908 31 H 0.011 0.989 32 H 0.038 0.962 33 H 0.074 0.926 34 H 0.102 0.898 35 H 0.142 0.858 36 H 0.089 0.911 37 H 0.046 0.954 38 H 0.079 0.921 39 H 0.082 0.918 40 H 0.149 0.851 41 H 0.129 0.871 42 H 0.249 0.751 43 H 0.234 0.766 44 H 0.081 0.919 45 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.266 -7.957 -24.170 25.655 hybrid contribution 0.231 0.470 0.718 0.889 sum -3.035 -7.487 -23.451 24.804 Atomic orbital electron populations 1.22151 0.95290 1.02872 1.01748 1.21745 0.95413 0.81002 1.03694 1.48301 1.64249 1.15063 1.06157 1.18702 0.95397 0.91436 0.80354 1.21665 0.97880 1.31233 1.06173 0.92624 1.25862 0.99808 0.97085 0.96638 1.70054 1.29669 1.42596 1.14894 0.85514 0.79524 0.78807 0.77262 1.20538 1.20413 1.18374 1.21203 0.77468 0.86690 0.86454 1.90597 1.47695 1.20066 1.87596 1.22278 1.04605 0.94360 0.87642 1.64625 1.26693 1.31167 1.01714 1.23284 0.88406 0.99544 0.97944 1.22445 1.00211 0.98755 0.93018 1.21700 0.96772 0.97098 0.94089 0.90472 1.21787 0.96712 1.03647 0.94409 1.21156 0.90204 0.76541 0.82507 1.43795 1.13551 1.62347 1.20897 1.90743 1.22943 1.58601 1.75100 1.23122 1.00437 0.96346 0.88703 0.94361 0.92700 0.88906 0.87852 0.90768 0.98850 0.96202 0.92569 0.89784 0.85824 0.91142 0.95429 0.92100 0.91763 0.85126 0.87148 0.75052 0.76589 0.91948 0.87562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.53 10.24 71.98 0.74 -3.79 16 2 C 0.10 3.11 5.98 86.38 0.52 3.63 16 3 N -0.61 -25.90 2.46 -826.15 -2.03 -27.93 16 4 C 0.26 14.44 5.20 85.63 0.45 14.89 16 5 C -0.53 -30.91 8.92 25.60 0.23 -30.68 16 6 H 0.06 3.20 7.42 -2.91 -0.02 3.17 16 7 C 0.00 0.26 5.46 84.66 0.46 0.72 16 8 N -0.93 -57.61 13.29 21.45 0.28 -57.33 16 9 Si 0.96 45.76 29.54 68.60 2.03 47.78 16 10 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 11 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 12 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 13 C 0.49 20.88 7.38 87.66 0.65 21.53 16 14 O -0.58 -30.63 13.10 -3.04 -0.04 -30.66 16 15 C 0.04 1.21 4.07 85.56 0.35 1.55 16 16 N -0.52 -14.98 5.26 -887.58 -4.67 -19.65 16 17 C 0.04 1.20 5.30 86.65 0.46 1.66 16 18 C -0.11 -2.90 5.70 31.80 0.18 -2.72 16 19 C -0.08 -1.51 2.60 -9.91 -0.03 -1.53 16 20 H 0.08 1.61 7.91 -2.39 -0.02 1.59 16 21 C -0.13 -1.59 4.87 29.85 0.15 -1.44 16 22 C 0.51 8.67 7.90 87.66 0.69 9.36 16 23 N -0.84 -7.21 8.87 -173.53 -1.54 -8.75 16 24 O -0.59 -16.34 15.85 -3.05 -0.05 -16.39 16 25 C 0.04 0.76 6.35 86.44 0.55 1.31 16 26 H 0.04 1.35 7.26 -2.39 -0.02 1.34 16 27 H 0.05 1.46 7.22 -2.39 -0.02 1.44 16 28 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.10 2.22 6.44 -2.39 -0.02 2.20 16 30 H 0.07 2.23 7.89 -2.39 -0.02 2.21 16 31 H -0.01 -0.42 7.42 -2.38 -0.02 -0.44 16 32 H 0.02 1.11 7.89 -2.39 -0.02 1.10 16 33 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 34 H 0.08 1.95 7.07 -2.39 -0.02 1.93 16 35 H 0.12 2.97 7.19 -2.38 -0.02 2.95 16 36 H 0.07 3.01 5.97 -2.39 -0.01 2.99 16 37 H 0.03 0.93 8.02 -2.39 -0.02 0.91 16 38 H 0.06 1.81 7.85 -2.38 -0.02 1.79 16 39 H 0.06 1.78 7.76 -2.39 -0.02 1.76 16 40 H 0.13 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.11 1.24 7.99 -2.39 -0.02 1.22 16 42 H 0.42 0.65 8.83 -92.70 -0.82 -0.16 16 43 H 0.40 3.17 8.93 -92.71 -0.83 2.35 16 44 H 0.06 0.98 7.57 -2.38 -0.02 0.96 16 45 H 0.11 1.46 7.69 -2.39 -0.02 1.44 16 Total: -1.00 -84.68 358.57 -1.27 -85.95 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -0.64 Total: 12.48 kcal Atomic # 6 Polarization: 9.10 SS G_CDS: 5.39 Total: 14.49 kcal Atomic # 7 Polarization: -105.70 SS G_CDS: -7.95 Total: -113.65 kcal Atomic # 8 Polarization: -46.96 SS G_CDS: -0.09 Total: -47.05 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.78 kcal Total: -84.68 -1.27 -85.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367990892.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.888 kcal (2) G-P(sol) polarization free energy of solvation -84.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds