Wall clock time and date at job start Tue Mar 31 2020 03:39:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46492 * 109.47243 * 2 1 4 4 C 1.46504 * 120.00323 * 269.99874 * 3 2 1 5 5 C 1.50696 * 109.46989 * 270.00095 * 4 3 2 6 6 H 1.08002 * 120.00411 * 0.02562 * 5 4 3 7 7 C 1.37876 * 119.99684 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00113 * 0.02562 * 7 5 4 9 9 Si 1.86806 * 120.00018 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46873 * 60.00312 * 9 7 5 11 11 H 1.48499 * 109.47336 * 180.02562 * 9 7 5 12 12 H 1.48502 * 109.47055 * 300.00415 * 9 7 5 13 13 C 1.34784 * 120.00399 * 89.99953 * 3 2 1 14 14 O 1.21271 * 120.00355 * 180.02562 * 13 3 2 15 15 C 1.50701 * 119.99301 * 0.02562 * 13 3 2 16 16 N 1.46906 * 109.46946 * 173.96340 * 15 13 3 17 17 C 1.47896 * 110.99973 * 183.36122 * 16 15 13 18 18 C 1.53993 * 107.06071 * 145.84147 * 17 16 15 19 19 C 1.54593 * 105.22329 * 358.72116 * 18 17 16 20 20 H 1.09008 * 110.72584 * 96.45404 * 19 18 17 21 21 C 1.53005 * 110.72540 * 219.73514 * 19 18 17 22 22 C 1.50700 * 109.47011 * 293.54669 * 21 19 18 23 23 N 1.34773 * 120.00055 * 179.97438 * 22 21 19 24 24 O 1.21288 * 120.00123 * 0.02562 * 22 21 19 25 25 C 1.48539 * 110.99441 * 300.75215 * 16 15 13 26 26 H 1.08991 * 109.47191 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.46851 * 300.00368 * 1 2 3 28 28 H 1.09004 * 109.47001 * 59.99637 * 1 2 3 29 29 H 1.08999 * 109.46683 * 239.99979 * 2 1 3 30 30 H 1.09000 * 109.46779 * 119.99916 * 2 1 3 31 31 H 1.08997 * 109.46635 * 29.99912 * 4 3 2 32 32 H 1.08998 * 109.46944 * 150.00016 * 4 3 2 33 33 H 0.96999 * 119.99850 * 179.97438 * 8 7 5 34 34 H 1.09000 * 109.47681 * 53.96166 * 15 13 3 35 35 H 1.09006 * 109.47294 * 293.95412 * 15 13 3 36 36 H 1.09002 * 109.92060 * 26.48857 * 17 16 15 37 37 H 1.09001 * 110.08004 * 265.28425 * 17 16 15 38 38 H 1.08994 * 110.31326 * 117.68692 * 18 17 16 39 39 H 1.09006 * 110.31122 * 239.75889 * 18 17 16 40 40 H 1.08996 * 109.46870 * 53.54737 * 21 19 18 41 41 H 1.09001 * 109.47238 * 173.54906 * 21 19 18 42 42 H 0.97005 * 120.00037 * 0.02562 * 23 22 21 43 43 H 0.96997 * 120.00249 * 180.02562 * 23 22 21 44 44 H 1.09001 * 110.66753 * 318.71153 * 25 16 15 45 45 H 1.08995 * 110.66354 * 81.84854 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 3.6859 1.8350 -1.7037 6 1 4.3427 1.2301 -1.0961 7 6 4.1492 2.3896 -2.8779 8 7 3.3493 3.1257 -3.6179 9 14 5.9133 2.0955 -3.4175 10 1 6.1402 0.6387 -3.5949 11 1 6.1609 2.7957 -4.7034 12 1 6.8412 2.6187 -2.3828 13 6 2.2431 2.0166 1.1672 14 8 2.6469 3.1601 1.1672 15 6 1.9924 1.3059 2.4723 16 7 2.4456 2.1512 3.5850 17 6 2.2891 1.4526 4.8792 18 6 3.4559 1.9009 5.7786 19 6 4.2939 2.8639 4.9066 20 1 4.0217 3.9005 5.1058 21 6 5.7898 2.6413 5.1383 22 6 6.1448 3.0413 6.5472 23 7 7.4166 2.9300 6.9791 24 8 5.2858 3.4625 7.2928 25 6 3.8936 2.4593 3.4638 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.5818 1.6877 -2.0283 32 1 2.0957 3.1410 -1.1383 33 1 3.6754 3.5162 -4.4438 34 1 2.5411 0.3642 2.4845 35 1 0.9260 1.1066 2.5785 36 1 2.3311 0.3742 4.7265 37 1 1.3395 1.7256 5.3394 38 1 3.0772 2.4202 6.6589 39 1 4.0561 1.0410 6.0764 40 1 6.0279 1.5882 4.9887 41 1 6.3606 3.2465 4.4341 42 1 8.1036 2.5929 6.3830 43 1 7.6451 3.1871 7.8861 44 1 4.4492 1.5775 3.1448 45 1 4.0542 3.2872 2.7732 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000367990893.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:19 Heat of formation + Delta-G solvation = -72.878521 kcal Electronic energy + Delta-G solvation = -24783.145712 eV Core-core repulsion = 21221.354722 eV Total energy + Delta-G solvation = -3561.790989 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.07998 -39.28466 -37.86894 -35.20814 -33.87557 -33.29670 -32.69743 -30.14662 -29.86027 -28.02102 -26.93438 -25.28953 -23.01196 -22.41907 -21.34285 -20.90056 -19.85828 -18.26183 -17.52144 -16.86217 -16.66269 -16.34023 -15.77007 -15.65171 -15.11742 -14.74910 -14.71308 -14.09804 -13.88958 -13.56172 -13.31372 -13.29070 -12.85645 -12.49037 -12.35585 -11.99945 -11.95921 -11.85156 -11.55507 -11.26225 -11.08975 -11.02907 -10.90814 -10.80536 -10.63707 -10.51024 -10.48935 -10.11044 -10.01639 -9.90726 -9.63405 -8.79565 -8.42858 -8.15576 -7.61298 -6.03433 -4.08310 2.47951 3.30226 3.31246 3.35100 3.36417 3.49458 3.77818 4.26650 4.44495 4.55883 4.72935 4.84999 4.97124 5.12573 5.20591 5.28535 5.30638 5.34717 5.45097 5.51428 5.56926 5.59041 5.68901 5.75023 5.81218 5.85196 5.97801 6.05485 6.16411 6.24831 6.39299 6.48200 6.50408 6.53522 7.00036 7.05056 7.10535 7.20984 7.48572 7.59317 7.93446 8.06984 8.25281 8.47851 8.91776 9.17182 9.56722 11.04552 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.013825 B = 0.004022 C = 0.003287 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2024.781812 B = 6960.200603 C = 8515.170528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.107 3.893 3 N -0.600 5.600 4 C 0.248 3.752 5 C -0.526 4.526 6 H 0.055 0.945 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.277 1.277 13 C 0.506 3.494 14 O -0.524 6.524 15 C 0.029 3.971 16 N -0.497 5.497 17 C 0.034 3.966 18 C -0.117 4.117 19 C -0.076 4.076 20 H 0.091 0.909 21 C -0.136 4.136 22 C 0.517 3.483 23 N -0.862 5.862 24 O -0.539 6.539 25 C 0.040 3.960 26 H 0.058 0.942 27 H 0.051 0.949 28 H 0.061 0.939 29 H 0.081 0.919 30 H 0.062 0.938 31 H 0.031 0.969 32 H 0.043 0.957 33 H 0.264 0.736 34 H 0.055 0.945 35 H 0.097 0.903 36 H 0.040 0.960 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.058 0.942 40 H 0.093 0.907 41 H 0.099 0.901 42 H 0.401 0.599 43 H 0.398 0.602 44 H 0.039 0.961 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.062 -7.642 17.277 19.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.018 4.018 3 N -0.333 5.333 4 C 0.129 3.871 5 C -0.565 4.565 6 H 0.073 0.927 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.291 3.709 14 O -0.400 6.400 15 C -0.103 4.103 16 N -0.221 5.221 17 C -0.094 4.094 18 C -0.155 4.155 19 C -0.095 4.095 20 H 0.110 0.890 21 C -0.176 4.176 22 C 0.303 3.697 23 N -0.425 5.425 24 O -0.415 6.415 25 C -0.087 4.087 26 H 0.077 0.923 27 H 0.070 0.930 28 H 0.080 0.920 29 H 0.100 0.900 30 H 0.080 0.920 31 H 0.049 0.951 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.115 0.885 36 H 0.059 0.941 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.077 0.923 40 H 0.112 0.888 41 H 0.118 0.882 42 H 0.229 0.771 43 H 0.229 0.771 44 H 0.057 0.943 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 2.236 -6.198 17.376 18.583 hybrid contribution 1.920 -1.209 -0.390 2.302 sum 4.156 -7.407 16.986 18.991 Atomic orbital electron populations 1.22224 0.96796 1.01330 1.02410 1.21404 0.93546 0.84366 1.02459 1.48263 1.64140 1.13160 1.07711 1.19233 0.96089 0.93674 0.78113 1.21389 0.96981 1.31874 1.06217 0.92667 1.24928 0.97741 0.94972 0.96411 1.69921 1.35686 1.33372 1.14353 0.86583 0.84922 0.78180 0.77846 1.20319 1.21175 1.20248 1.20106 0.78912 0.87104 0.84732 1.90635 1.44915 1.17676 1.86811 1.22306 1.02118 0.94737 0.91123 1.64534 1.17786 1.39524 1.00285 1.22933 0.99658 0.96282 0.90548 1.22392 0.96083 0.98469 0.98574 1.21870 0.91450 1.01375 0.94851 0.89031 1.21729 0.98772 1.03540 0.93572 1.20790 0.82081 0.76771 0.90092 1.43949 1.10410 1.69964 1.18206 1.90743 1.48064 1.45185 1.57497 1.23459 0.87229 1.01597 0.96414 0.92262 0.93014 0.92010 0.90043 0.92004 0.95143 0.93884 0.92674 0.92702 0.88499 0.94141 0.90403 0.90316 0.92289 0.88842 0.88245 0.77076 0.77126 0.94288 0.87454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 10.24 37.16 0.38 -1.89 16 2 C 0.11 1.70 5.96 -4.04 -0.02 1.67 16 3 N -0.60 -12.60 2.46 -175.06 -0.43 -13.03 16 4 C 0.25 6.46 5.16 -5.19 -0.03 6.44 16 5 C -0.53 -14.75 9.39 -34.44 -0.32 -15.08 16 6 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.51 13.29 55.43 0.74 -25.78 16 9 Si 0.90 21.58 29.54 -169.99 -5.02 16.55 16 10 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 13 C 0.51 10.54 7.31 -10.98 -0.08 10.46 16 14 O -0.52 -13.14 13.87 5.56 0.08 -13.06 16 15 C 0.03 0.45 4.03 -4.97 -0.02 0.43 16 16 N -0.50 -7.82 5.11 -231.78 -1.18 -9.00 16 17 C 0.03 0.42 6.70 -2.76 -0.02 0.40 16 18 C -0.12 -1.40 5.47 -25.38 -0.14 -1.54 16 19 C -0.08 -0.98 2.66 -88.67 -0.24 -1.21 16 20 H 0.09 1.34 8.05 -51.92 -0.42 0.92 16 21 C -0.14 -1.32 5.11 -27.88 -0.14 -1.47 16 22 C 0.52 5.39 7.89 -10.99 -0.09 5.31 16 23 N -0.86 -5.54 8.87 31.22 0.28 -5.27 16 24 O -0.54 -7.80 15.73 5.55 0.09 -7.72 16 25 C 0.04 0.63 5.04 -1.81 -0.01 0.62 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.67 7.41 -51.93 -0.38 0.28 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 30 H 0.06 0.82 6.28 -51.93 -0.33 0.49 16 31 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 32 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 33 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 34 H 0.06 0.77 6.92 -51.93 -0.36 0.41 16 35 H 0.10 1.34 7.41 -51.93 -0.38 0.96 16 36 H 0.04 0.45 7.68 -51.93 -0.40 0.05 16 37 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 38 H 0.08 1.01 7.73 -51.93 -0.40 0.61 16 39 H 0.06 0.63 7.80 -51.93 -0.41 0.23 16 40 H 0.09 0.75 8.08 -51.93 -0.42 0.33 16 41 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.40 1.46 8.83 -40.82 -0.36 1.10 16 43 H 0.40 2.21 8.93 -40.82 -0.36 1.85 16 44 H 0.04 0.58 7.92 -51.93 -0.41 0.17 16 45 H 0.11 2.03 6.43 -51.93 -0.33 1.69 16 LS Contribution 362.30 15.07 5.46 5.46 Total: -1.00 -35.39 362.30 -8.25 -43.64 By element: Atomic # 1 Polarization: 9.84 SS G_CDS: -7.43 Total: 2.42 kcal Atomic # 6 Polarization: 6.60 SS G_CDS: -0.82 Total: 5.78 kcal Atomic # 7 Polarization: -52.48 SS G_CDS: -0.60 Total: -53.08 kcal Atomic # 8 Polarization: -20.94 SS G_CDS: 0.16 Total: -20.78 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -35.39 -8.25 -43.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000367990893.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.239 kcal (2) G-P(sol) polarization free energy of solvation -35.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.248 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds