Wall clock time and date at job start Tue Mar 31 2020 03:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46500 * 109.47036 * 2 1 4 4 C 1.46504 * 119.99972 * 269.99549 * 3 2 1 5 5 C 1.50702 * 109.47023 * 270.00186 * 4 3 2 6 6 H 1.08003 * 119.99854 * 0.02562 * 5 4 3 7 7 C 1.37871 * 119.99720 * 179.97438 * 5 4 3 8 8 N 1.31519 * 120.00368 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 120.00206 * 179.97438 * 7 5 4 10 10 H 1.48508 * 109.47043 * 59.99854 * 9 7 5 11 11 H 1.48497 * 109.47553 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47060 * 300.00495 * 9 7 5 13 13 C 1.34777 * 119.99949 * 89.99774 * 3 2 1 14 14 O 1.21281 * 119.99804 * 179.97438 * 13 3 2 15 15 C 1.50704 * 120.00307 * 0.02562 * 13 3 2 16 16 N 1.46900 * 109.47230 * 180.02562 * 15 13 3 17 17 C 1.45557 * 111.00029 * 66.04067 * 16 15 13 18 18 C 1.53066 * 110.84988 * 163.62924 * 17 16 15 19 19 N 1.47255 * 108.56003 * 85.73024 * 18 17 16 20 20 C 1.33632 * 120.10764 * 289.31950 * 19 18 17 21 21 O 1.21277 * 120.05470 * 180.23863 * 20 19 18 22 22 C 1.51495 * 119.89638 * 0.25351 * 20 19 18 23 23 C 1.45584 * 110.99495 * 295.45011 * 16 15 13 24 24 H 1.08999 * 109.23104 * 75.83242 * 23 16 15 25 25 C 1.52998 * 109.23717 * 316.40826 * 23 16 15 26 26 H 1.08996 * 109.47891 * 300.00225 * 1 2 3 27 27 H 1.08997 * 109.47216 * 60.00182 * 1 2 3 28 28 H 1.09001 * 109.47770 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47508 * 239.99425 * 2 1 3 30 30 H 1.09005 * 109.46664 * 119.99512 * 2 1 3 31 31 H 1.08995 * 109.46791 * 30.00305 * 4 3 2 32 32 H 1.08999 * 109.46709 * 150.00527 * 4 3 2 33 33 H 0.96997 * 120.00354 * 179.97438 * 8 7 5 34 34 H 1.08997 * 109.47520 * 59.99372 * 15 13 3 35 35 H 1.09005 * 109.46653 * 299.99767 * 15 13 3 36 36 H 1.09004 * 109.20247 * 43.28032 * 17 16 15 37 37 H 1.08995 * 109.16748 * 283.95618 * 17 16 15 38 38 H 1.08993 * 109.62155 * 205.45343 * 18 17 16 39 39 H 1.08999 * 109.62348 * 326.01126 * 18 17 16 40 40 H 0.97007 * 119.94708 * 109.29485 * 19 18 17 41 41 H 1.08997 * 109.68499 * 310.28809 * 22 20 19 42 42 H 1.08996 * 109.67864 * 189.72738 * 22 20 19 43 43 H 1.08999 * 109.47050 * 60.00272 * 25 23 16 44 44 H 1.09007 * 109.47006 * 179.97438 * 25 23 16 45 45 H 1.08993 * 109.47363 * 300.00199 * 25 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0718 -1.2688 5 6 3.6858 1.8350 -1.7037 6 1 4.3426 1.2301 -1.0960 7 6 4.1492 2.3895 -2.8779 8 7 3.3489 3.1248 -3.6186 9 14 5.9136 2.0966 -3.4167 10 1 6.1419 0.6399 -3.5934 11 1 6.1611 2.7965 -4.7028 12 1 6.8407 2.6209 -2.3819 13 6 2.2428 2.0166 1.1672 14 8 2.6475 3.1599 1.1672 15 6 1.9922 1.3060 2.4724 16 7 2.3096 2.2063 3.5889 17 6 1.3908 3.3346 3.6267 18 6 1.4496 4.0398 4.9840 19 7 2.5453 5.0231 4.9541 20 6 3.8163 4.6104 4.9453 21 8 4.7180 5.4212 4.9251 22 6 4.1290 3.1282 4.9601 23 6 3.7275 2.5365 3.6058 24 1 3.9363 3.2629 2.8205 25 6 4.5435 1.2680 3.3491 26 1 -0.3635 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3635 -1.0276 0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8901 31 1 1.5817 1.6877 -2.0284 32 1 2.0956 3.1410 -1.1384 33 1 3.6750 3.5152 -4.4445 34 1 2.6226 0.4187 2.5300 35 1 0.9443 1.0115 2.5302 36 1 0.3761 2.9765 3.4525 37 1 1.6607 4.0423 2.8430 38 1 0.5050 4.5499 5.1726 39 1 1.6364 3.3074 5.7693 40 1 2.3442 5.9720 4.9406 41 1 3.5641 2.6417 5.7553 42 1 5.1964 2.9799 5.1236 43 1 4.2762 0.8547 2.3766 44 1 5.6061 1.5111 3.3605 45 1 4.3297 0.5348 4.1267 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000371183486.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:34 Heat of formation + Delta-G solvation = -87.144476 kcal Electronic energy + Delta-G solvation = -26004.595808 eV Core-core repulsion = 22442.186201 eV Total energy + Delta-G solvation = -3562.409608 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.76281 -40.58324 -38.48544 -36.83825 -36.01472 -34.94287 -33.57824 -31.61787 -30.75206 -29.13572 -28.72302 -26.87292 -24.74980 -24.01632 -23.91408 -21.60223 -20.93554 -19.72210 -18.65741 -18.34767 -18.17808 -17.52455 -17.18917 -17.02870 -16.41980 -16.06460 -16.00676 -15.29635 -14.97726 -14.83118 -14.58354 -14.50700 -14.09123 -13.59635 -13.56799 -13.52615 -13.24390 -13.15803 -13.08406 -12.81466 -12.69563 -12.62817 -12.57397 -12.33757 -12.14282 -12.06498 -11.91941 -11.77533 -11.56631 -11.05924 -10.90502 -10.68268 -10.14880 -9.40294 -9.11200 -8.26057 -6.40851 1.31145 1.35859 1.42539 1.57045 1.86061 2.29514 2.39376 2.47453 2.74746 3.03317 3.51667 3.75921 3.90553 4.03041 4.14579 4.18212 4.29991 4.37021 4.43960 4.48589 4.53659 4.58118 4.65555 4.69273 4.75095 4.83666 4.89239 4.96911 5.02139 5.07176 5.14865 5.18987 5.21114 5.31764 5.42402 5.55926 5.79209 5.86361 5.96271 6.04101 6.05984 6.30739 6.67669 6.85175 7.20161 7.26167 7.53551 8.80371 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.014745 B = 0.005068 C = 0.004335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.520896 B = 5523.335712 C = 6458.237850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.098 3.902 3 N -0.603 5.603 4 C 0.265 3.735 5 C -0.539 4.539 6 H 0.052 0.948 7 C 0.007 3.993 8 N -0.930 5.930 9 Si 0.963 3.037 10 H -0.256 1.256 11 H -0.279 1.279 12 H -0.282 1.282 13 C 0.463 3.537 14 O -0.594 6.594 15 C 0.045 3.955 16 N -0.511 5.511 17 C 0.027 3.973 18 C 0.116 3.884 19 N -0.721 5.721 20 C 0.507 3.493 21 O -0.612 6.612 22 C -0.118 4.118 23 C 0.090 3.910 24 H 0.015 0.985 25 C -0.145 4.145 26 H 0.065 0.935 27 H 0.032 0.968 28 H 0.096 0.904 29 H 0.066 0.934 30 H 0.106 0.894 31 H 0.017 0.983 32 H -0.011 1.011 33 H 0.266 0.734 34 H 0.130 0.870 35 H 0.134 0.866 36 H 0.106 0.894 37 H 0.019 0.981 38 H 0.126 0.874 39 H 0.110 0.890 40 H 0.400 0.600 41 H 0.134 0.866 42 H 0.101 0.899 43 H 0.044 0.956 44 H 0.058 0.942 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.654 -9.734 19.206 23.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.024 4.024 3 N -0.335 5.335 4 C 0.143 3.857 5 C -0.577 4.577 6 H 0.070 0.930 7 C -0.192 4.192 8 N -0.570 5.570 9 Si 0.787 3.213 10 H -0.180 1.180 11 H -0.204 1.204 12 H -0.208 1.208 13 C 0.251 3.749 14 O -0.476 6.476 15 C -0.085 4.085 16 N -0.234 5.234 17 C -0.101 4.101 18 C -0.007 4.007 19 N -0.371 5.371 20 C 0.295 3.705 21 O -0.495 6.495 22 C -0.158 4.158 23 C -0.019 4.019 24 H 0.033 0.967 25 C -0.202 4.202 26 H 0.084 0.916 27 H 0.051 0.949 28 H 0.115 0.885 29 H 0.085 0.915 30 H 0.124 0.876 31 H 0.035 0.965 32 H 0.007 0.993 33 H 0.075 0.925 34 H 0.147 0.853 35 H 0.152 0.848 36 H 0.125 0.875 37 H 0.038 0.962 38 H 0.144 0.856 39 H 0.128 0.872 40 H 0.236 0.764 41 H 0.152 0.848 42 H 0.119 0.881 43 H 0.063 0.937 44 H 0.077 0.923 45 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -8.064 -9.085 19.437 22.921 hybrid contribution 1.057 1.535 -2.133 2.833 sum -7.007 -7.551 17.303 20.137 Atomic orbital electron populations 1.22144 0.94434 1.03564 1.01643 1.21766 0.95416 0.81268 1.03950 1.48437 1.63611 1.15103 1.06301 1.18588 0.94963 0.91170 0.81006 1.21671 0.97975 1.31768 1.06309 0.92961 1.25844 1.02204 0.94579 0.96574 1.70043 1.37761 1.34335 1.14813 0.85545 0.79208 0.79258 0.77288 1.18001 1.20367 1.20790 1.22813 0.77267 0.87108 0.87697 1.90643 1.48077 1.20961 1.87885 1.22614 1.05867 0.96742 0.83305 1.60198 1.02997 1.19655 1.40532 1.22509 0.97219 0.92594 0.97822 1.22132 0.90147 0.91682 0.96718 1.46162 1.06279 1.11269 1.73354 1.21312 0.82658 0.92812 0.73718 1.90697 1.47528 1.58080 1.53219 1.22077 1.04585 0.89626 0.99555 1.21138 0.88265 0.97642 0.94877 0.96740 1.21985 0.99175 0.96756 1.02282 0.91559 0.94896 0.88541 0.91539 0.87601 0.96468 0.99319 0.92499 0.85282 0.84799 0.87542 0.96223 0.85597 0.87241 0.76401 0.84818 0.88074 0.93681 0.92301 0.87984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.47 10.24 71.98 0.74 -2.74 16 2 C 0.10 2.72 5.93 86.38 0.51 3.23 16 3 N -0.60 -24.29 2.46 -826.16 -2.03 -26.32 16 4 C 0.26 14.32 5.16 85.63 0.44 14.77 16 5 C -0.54 -31.37 9.39 25.60 0.24 -31.13 16 6 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 7 C 0.01 0.40 5.46 84.65 0.46 0.86 16 8 N -0.93 -57.51 13.29 21.45 0.28 -57.22 16 9 Si 0.96 45.98 29.54 68.60 2.03 48.00 16 10 H -0.26 -11.30 7.11 99.48 0.71 -10.59 16 11 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 12 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16 13 C 0.46 17.76 6.62 87.66 0.58 18.34 16 14 O -0.59 -29.58 11.81 -3.03 -0.04 -29.61 16 15 C 0.05 1.07 3.76 85.56 0.32 1.39 16 16 N -0.51 -11.71 4.23 -881.90 -3.73 -15.43 16 17 C 0.03 0.61 4.82 86.58 0.42 1.03 16 18 C 0.12 1.77 6.51 86.26 0.56 2.33 16 19 N -0.72 -16.86 5.31 -461.92 -2.45 -19.31 16 20 C 0.51 15.56 7.10 88.09 0.63 16.19 16 21 O -0.61 -25.08 17.93 -3.02 -0.05 -25.13 16 22 C -0.12 -2.82 5.05 30.15 0.15 -2.66 16 23 C 0.09 2.54 1.83 45.21 0.08 2.62 16 24 H 0.01 0.61 5.88 -2.39 -0.01 0.59 16 25 C -0.14 -3.49 8.17 71.98 0.59 -2.90 16 26 H 0.07 1.24 7.22 -2.39 -0.02 1.22 16 27 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 28 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.07 2.05 8.07 -2.39 -0.02 2.03 16 30 H 0.11 2.07 6.44 -2.38 -0.02 2.06 16 31 H 0.02 0.96 8.07 -2.39 -0.02 0.94 16 32 H -0.01 -0.72 7.42 -2.39 -0.02 -0.74 16 33 H 0.27 15.51 8.31 -92.71 -0.77 14.74 16 34 H 0.13 2.53 5.12 -2.39 -0.01 2.52 16 35 H 0.13 2.23 6.97 -2.38 -0.02 2.21 16 36 H 0.11 1.84 7.81 -2.38 -0.02 1.82 16 37 H 0.02 0.67 6.17 -2.39 -0.01 0.65 16 38 H 0.13 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.11 1.21 7.02 -2.39 -0.02 1.20 16 40 H 0.40 8.88 8.92 -92.70 -0.83 8.05 16 41 H 0.13 2.14 7.07 -2.39 -0.02 2.13 16 42 H 0.10 2.38 7.88 -2.39 -0.02 2.36 16 43 H 0.04 1.24 5.81 -2.39 -0.01 1.23 16 44 H 0.06 1.46 8.09 -2.38 -0.02 1.44 16 45 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -86.89 348.56 -0.09 -86.98 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: 0.17 Total: 16.72 kcal Atomic # 6 Polarization: 15.61 SS G_CDS: 5.72 Total: 21.33 kcal Atomic # 7 Polarization: -110.36 SS G_CDS: -7.92 Total: -118.29 kcal Atomic # 8 Polarization: -54.66 SS G_CDS: -0.09 Total: -54.75 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.00 kcal Total: -86.89 -0.09 -86.98 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000371183486.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.163 kcal (2) G-P(sol) polarization free energy of solvation -86.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds