Wall clock time and date at job start Tue Mar 31 2020 03:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46501 * 109.46896 * 2 1 4 4 C 1.34778 * 119.99621 * 179.97438 * 3 2 1 5 5 O 1.21535 * 120.00299 * 0.02562 * 4 3 2 6 6 N 1.34773 * 119.99813 * 180.02562 * 4 3 2 7 7 C 1.34782 * 120.00336 * 180.02562 * 6 4 3 8 8 O 1.21230 * 119.99503 * 0.02562 * 7 6 4 9 9 C 1.50700 * 120.00369 * 179.97438 * 7 6 4 10 10 H 1.09003 * 109.46795 * 31.84732 * 9 7 6 11 11 C 1.52992 * 109.47290 * 271.84892 * 9 7 6 12 12 N 1.46898 * 109.46883 * 151.84620 * 9 7 6 13 13 C 1.46845 * 111.00091 * 306.49057 * 12 9 7 14 14 C 1.53033 * 109.52300 * 185.83888 * 13 12 9 15 15 C 1.53120 * 109.28163 * 300.82487 * 14 13 12 16 16 C 1.50699 * 109.52216 * 177.55650 * 15 14 13 17 17 H 1.07996 * 120.00394 * 0.02562 * 16 15 14 18 18 C 1.37885 * 119.99762 * 180.02562 * 16 15 14 19 19 N 1.31515 * 119.99685 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 119.99769 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47270 * 60.00182 * 20 18 16 22 22 H 1.48507 * 109.46694 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47196 * 299.99646 * 20 18 16 24 24 C 1.53123 * 109.15955 * 57.65280 * 15 14 13 25 25 C 1.46839 * 110.99944 * 70.70607 * 12 9 7 26 26 H 1.09000 * 109.47041 * 179.97438 * 1 2 3 27 27 H 1.08991 * 109.46965 * 299.99454 * 1 2 3 28 28 H 1.08999 * 109.46833 * 59.99620 * 1 2 3 29 29 H 1.09001 * 109.46958 * 240.00572 * 2 1 3 30 30 H 1.08998 * 109.47264 * 120.00070 * 2 1 3 31 31 H 0.96995 * 120.00096 * 0.02562 * 3 2 1 32 32 H 0.97004 * 120.00443 * 0.02562 * 6 4 3 33 33 H 1.08998 * 109.47516 * 299.99812 * 11 9 7 34 34 H 1.09004 * 109.47149 * 59.99700 * 11 9 7 35 35 H 1.09000 * 109.47702 * 179.97438 * 11 9 7 36 36 H 1.09007 * 109.45959 * 65.82836 * 13 12 9 37 37 H 1.08998 * 109.45624 * 305.85662 * 13 12 9 38 38 H 1.08999 * 109.50563 * 180.88303 * 14 13 12 39 39 H 1.09004 * 109.50020 * 60.76741 * 14 13 12 40 40 H 1.09000 * 109.52047 * 297.74643 * 15 14 13 41 41 H 0.96997 * 119.99594 * 179.97438 * 19 18 16 42 42 H 1.09000 * 109.50112 * 62.28887 * 24 15 14 43 43 H 1.08991 * 109.50191 * 182.40660 * 24 15 14 44 44 H 1.08995 * 109.46159 * 294.17428 * 25 12 9 45 45 H 1.09003 * 109.46728 * 54.14326 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3434 1.6275 0.0005 5 8 4.1332 0.7037 0.0005 6 7 3.7927 2.8981 0.0010 7 6 5.1178 3.1445 0.0010 8 8 5.9055 2.2231 0.0001 9 6 5.6201 4.5653 0.0010 10 1 4.9181 5.1988 0.5433 11 6 5.7462 5.0617 -1.4406 12 7 6.9346 4.6199 0.6545 13 6 6.8849 4.0082 1.9886 14 6 8.2271 4.2119 2.6949 15 6 9.3399 3.5715 1.8605 16 6 10.6714 3.8208 2.5207 17 1 10.7204 4.3796 3.4436 18 6 11.8272 3.3354 1.9465 19 7 11.7674 2.6545 0.8229 20 14 13.4776 3.6437 2.7653 21 1 13.4747 3.0471 4.1252 22 1 14.5559 3.0223 1.9550 23 1 13.7143 5.1062 2.8668 24 6 9.3387 4.1920 0.4606 25 6 7.9642 3.9889 -0.1809 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 1.3880 2.1185 0.0004 32 1 3.1624 3.6355 0.0014 33 1 6.4482 4.4282 -1.9829 34 1 4.7708 5.0211 -1.9255 35 1 6.1091 6.0895 -1.4407 36 1 6.6837 2.9413 1.8917 37 1 6.0923 4.4756 2.5730 38 1 8.1952 3.7442 3.6790 39 1 8.4224 5.2787 2.8046 40 1 9.1656 2.4983 1.7834 41 1 12.5805 2.3133 0.4188 42 1 9.5515 5.2585 0.5351 43 1 10.1008 3.7102 -0.1516 44 1 7.7580 2.9222 -0.2677 45 1 7.9556 4.4421 -1.1722 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397338095.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:52:19 Heat of formation + Delta-G solvation = -59.625728 kcal Electronic energy + Delta-G solvation = -25175.717833 eV Core-core repulsion = 21614.501528 eV Total energy + Delta-G solvation = -3561.216305 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.31747 -39.36042 -37.28143 -35.43491 -34.63023 -34.21494 -32.03596 -30.70236 -29.80387 -29.27966 -25.74405 -24.98690 -23.26368 -22.09852 -21.86725 -20.95351 -20.26248 -18.99347 -18.43895 -17.09638 -16.35365 -16.22193 -15.72322 -15.60077 -15.04411 -14.63240 -14.37451 -14.22759 -14.11126 -13.78886 -13.09134 -12.87226 -12.68522 -12.48802 -12.30644 -12.21674 -12.09521 -11.88921 -11.87054 -11.32550 -11.04338 -10.84391 -10.80856 -10.65224 -10.40408 -10.20927 -9.98434 -9.85106 -9.71639 -9.35708 -9.30675 -8.85540 -8.56823 -8.17155 -7.64349 -5.84823 -3.90522 2.14289 2.27251 3.26457 3.40178 3.44454 3.47030 3.75468 4.25619 4.54391 4.58352 4.66056 4.71946 4.94831 5.00221 5.12807 5.42222 5.44268 5.50566 5.54301 5.59074 5.72566 5.81521 6.01856 6.03251 6.11165 6.12091 6.21076 6.40772 6.42082 6.55502 6.72086 6.81374 7.01063 7.15340 7.22559 7.36006 7.51375 7.65928 7.71787 7.91726 8.13602 8.19988 8.29539 8.30671 8.60498 9.13206 9.72891 11.21204 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.026345 B = 0.003306 C = 0.003146 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.562380 B = 8468.047918 C = 8896.880766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.129 3.871 3 N -0.743 5.743 4 C 0.688 3.312 5 O -0.528 6.528 6 N -0.694 5.694 7 C 0.482 3.518 8 O -0.448 6.448 9 C 0.068 3.932 10 H 0.100 0.900 11 C -0.144 4.144 12 N -0.502 5.502 13 C 0.045 3.955 14 C -0.102 4.102 15 C 0.048 3.952 16 C -0.511 4.511 17 H 0.053 0.947 18 C 0.060 3.940 19 N -0.890 5.890 20 Si 0.889 3.111 21 H -0.279 1.279 22 H -0.289 1.289 23 H -0.278 1.278 24 C -0.101 4.101 25 C 0.033 3.967 26 H 0.076 0.924 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.068 0.932 31 H 0.396 0.604 32 H 0.405 0.595 33 H 0.070 0.930 34 H 0.058 0.942 35 H 0.081 0.919 36 H 0.042 0.958 37 H 0.053 0.947 38 H 0.049 0.951 39 H 0.055 0.945 40 H 0.023 0.977 41 H 0.259 0.741 42 H 0.039 0.961 43 H 0.092 0.908 44 H 0.060 0.940 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.008 3.130 -4.497 25.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.005 3.995 3 N -0.402 5.402 4 C 0.387 3.613 5 O -0.399 6.399 6 N -0.362 5.362 7 C 0.266 3.734 8 O -0.314 6.314 9 C -0.045 4.045 10 H 0.118 0.882 11 C -0.202 4.202 12 N -0.226 5.226 13 C -0.082 4.082 14 C -0.140 4.140 15 C 0.029 3.971 16 C -0.549 4.549 17 H 0.071 0.929 18 C -0.141 4.141 19 N -0.529 5.529 20 Si 0.718 3.282 21 H -0.205 1.205 22 H -0.214 1.214 23 H -0.204 1.204 24 C -0.139 4.139 25 C -0.093 4.093 26 H 0.094 0.906 27 H 0.081 0.919 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.230 0.770 32 H 0.240 0.760 33 H 0.089 0.911 34 H 0.077 0.923 35 H 0.100 0.900 36 H 0.061 0.939 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.074 0.926 40 H 0.041 0.959 41 H 0.069 0.931 42 H 0.058 0.942 43 H 0.111 0.889 44 H 0.078 0.922 45 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -23.438 2.055 -4.563 23.966 hybrid contribution -0.175 0.052 0.374 0.416 sum -23.613 2.107 -4.190 24.074 Atomic orbital electron populations 1.22006 0.94243 1.03397 1.02488 1.21221 0.93936 0.81566 1.02783 1.45350 1.05108 1.09458 1.80270 1.16332 0.82966 0.83507 0.78450 1.91097 1.54306 1.42490 1.52047 1.44650 1.10306 1.08145 1.73050 1.22977 0.80560 0.94307 0.75507 1.90848 1.53316 1.46361 1.40842 1.22085 0.94412 0.89586 0.98445 0.88191 1.21887 1.02189 1.03202 0.92908 1.62618 1.01324 1.55319 1.03309 1.22331 0.99560 0.97411 0.88918 1.21632 0.93438 1.00907 0.98016 1.18674 0.91949 0.95130 0.91315 1.21169 0.91403 1.34237 1.08080 0.92901 1.24980 0.98901 0.95163 0.95027 1.69887 1.27931 1.36712 1.18358 0.86708 0.83811 0.78321 0.79402 1.20451 1.21425 1.20375 1.21638 0.92823 0.99773 0.99703 1.22696 0.93007 0.98455 0.95176 0.90559 0.91919 0.91957 0.91376 0.91336 0.77003 0.76044 0.91071 0.92252 0.90011 0.93947 0.92864 0.93226 0.92583 0.95900 0.93100 0.94177 0.88948 0.92223 0.92348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.70 10.03 37.16 0.37 -0.33 16 2 C 0.13 1.03 6.39 -4.04 -0.03 1.00 16 3 N -0.74 -6.25 5.56 -65.23 -0.36 -6.62 16 4 C 0.69 9.33 8.50 -86.92 -0.74 8.59 16 5 O -0.53 -10.47 14.74 -18.47 -0.27 -10.74 16 6 N -0.69 -7.79 5.24 -15.78 -0.08 -7.87 16 7 C 0.48 7.48 5.96 -10.98 -0.07 7.41 16 8 O -0.45 -9.65 10.85 -18.20 -0.20 -9.85 16 9 C 0.07 0.91 2.95 -68.87 -0.20 0.71 16 10 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 11 C -0.14 -1.62 8.57 37.15 0.32 -1.30 16 12 N -0.50 -9.08 4.73 -228.09 -1.08 -10.15 16 13 C 0.05 0.88 4.89 -3.84 -0.02 0.86 16 14 C -0.10 -2.29 5.32 -26.65 -0.14 -2.43 16 15 C 0.05 1.28 2.16 -91.65 -0.20 1.08 16 16 C -0.51 -14.70 8.56 -34.44 -0.29 -15.00 16 17 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 18 C 0.06 1.74 5.31 -17.82 -0.09 1.65 16 19 N -0.89 -26.69 11.37 55.43 0.63 -26.06 16 20 Si 0.89 22.14 29.54 -169.99 -5.02 17.11 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 C -0.10 -2.53 5.12 -26.65 -0.14 -2.67 16 25 C 0.03 0.70 4.62 -3.84 -0.02 0.68 16 26 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.40 1.78 8.49 -40.82 -0.35 1.43 16 32 H 0.41 2.37 8.71 -40.82 -0.36 2.02 16 33 H 0.07 0.95 6.19 -51.93 -0.32 0.63 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.04 0.94 6.10 -51.93 -0.32 0.62 16 37 H 0.05 0.88 8.12 -51.93 -0.42 0.45 16 38 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.06 1.24 8.14 -51.93 -0.42 0.81 16 40 H 0.02 0.69 8.14 -51.93 -0.42 0.27 16 41 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 42 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.09 2.58 6.17 -51.93 -0.32 2.26 16 44 H 0.06 1.44 5.67 -51.93 -0.29 1.14 16 45 H 0.06 1.11 5.82 -51.93 -0.30 0.80 16 LS Contribution 350.76 15.07 5.29 5.29 Total: -1.00 -37.80 350.76 -9.64 -47.44 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -7.29 Total: 1.20 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: -1.24 Total: 0.26 kcal Atomic # 7 Polarization: -49.81 SS G_CDS: -0.89 Total: -50.70 kcal Atomic # 8 Polarization: -20.12 SS G_CDS: -0.47 Total: -20.59 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -37.80 -9.64 -47.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397338095.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.188 kcal (2) G-P(sol) polarization free energy of solvation -37.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds