Wall clock time and date at job start Tue Mar 31 2020 03:52:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46498 * 109.47427 * 2 1 4 4 C 1.34774 * 120.00210 * 179.97438 * 3 2 1 5 5 O 1.21537 * 119.99798 * 359.97438 * 4 3 2 6 6 N 1.34773 * 119.99941 * 179.97438 * 4 3 2 7 7 C 1.34784 * 119.99935 * 179.97438 * 6 4 3 8 8 O 1.21238 * 119.99804 * 359.72824 * 7 6 4 9 9 C 1.50694 * 119.99988 * 179.72721 * 7 6 4 10 10 H 1.08998 * 109.47224 * 299.99701 * 9 7 6 11 11 C 1.53000 * 109.47174 * 60.00061 * 9 7 6 12 12 N 1.46903 * 109.47066 * 180.02562 * 9 7 6 13 13 C 1.46845 * 111.00026 * 299.20822 * 12 9 7 14 14 C 1.53032 * 109.52588 * 174.15972 * 13 12 9 15 15 C 1.53119 * 109.27797 * 59.17930 * 14 13 12 16 16 C 1.50701 * 109.52346 * 182.44273 * 15 14 13 17 17 H 1.08002 * 119.99889 * 119.68542 * 16 15 14 18 18 C 1.37882 * 120.00050 * 299.68222 * 16 15 14 19 19 N 1.31515 * 119.99601 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 119.99781 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47116 * 60.00424 * 20 18 16 22 22 H 1.48507 * 109.46810 * 180.02562 * 20 18 16 23 23 H 1.48496 * 109.47494 * 299.99913 * 20 18 16 24 24 C 1.53124 * 109.16257 * 302.34700 * 15 14 13 25 25 C 1.46848 * 110.99762 * 175.00005 * 12 9 7 26 26 H 1.09003 * 109.47140 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46916 * 300.00359 * 1 2 3 28 28 H 1.09001 * 109.46892 * 60.00377 * 1 2 3 29 29 H 1.08998 * 109.47065 * 239.99359 * 2 1 3 30 30 H 1.09006 * 109.46890 * 120.00101 * 2 1 3 31 31 H 0.97004 * 119.99753 * 359.97438 * 3 2 1 32 32 H 0.97000 * 120.00669 * 359.72690 * 6 4 3 33 33 H 1.09000 * 109.47156 * 60.00213 * 11 9 7 34 34 H 1.08998 * 109.47223 * 179.97438 * 11 9 7 35 35 H 1.08995 * 109.47095 * 299.99934 * 11 9 7 36 36 H 1.09000 * 109.46510 * 294.18030 * 13 12 9 37 37 H 1.09009 * 109.45921 * 54.14476 * 13 12 9 38 38 H 1.09008 * 109.50418 * 299.24020 * 14 13 12 39 39 H 1.08994 * 109.50733 * 179.12306 * 14 13 12 40 40 H 1.08999 * 109.52313 * 62.25095 * 15 14 13 41 41 H 0.96996 * 119.99606 * 179.97438 * 19 18 16 42 42 H 1.09001 * 109.50194 * 297.71564 * 24 15 14 43 43 H 1.09001 * 109.50144 * 177.59112 * 24 15 14 44 44 H 1.08999 * 109.46155 * 305.85017 * 25 12 9 45 45 H 1.08996 * 109.46579 * 65.82494 * 25 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3435 1.6274 0.0005 5 8 4.1332 0.7036 0.0015 6 7 3.7927 2.8981 0.0000 7 6 5.1179 3.1443 0.0010 8 8 5.9057 2.2228 0.0074 9 6 5.6202 4.5651 -0.0058 10 1 5.2586 5.0741 -0.8992 11 6 5.1080 5.2931 1.2386 12 7 7.0893 4.5650 -0.0037 13 6 7.6138 3.9023 1.1971 14 6 9.1368 3.7916 1.0961 15 6 9.7377 5.1933 0.9603 16 6 11.2324 5.0872 0.8002 17 1 11.7088 5.4708 -0.0899 18 6 11.9919 4.5005 1.7902 19 7 11.4117 4.0330 2.8740 20 14 13.8447 4.3696 1.5920 21 1 14.4250 5.7294 1.4533 22 1 14.4243 3.7030 2.7858 23 1 14.1577 3.5716 0.3794 24 6 9.1388 5.8799 -0.2704 25 6 7.6157 5.9301 -0.1297 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.3881 2.1185 -0.0004 32 1 3.1625 3.6354 -0.0048 33 1 5.4698 4.7841 2.1321 34 1 5.4717 6.3206 1.2340 35 1 4.0181 5.2931 1.2367 36 1 7.3498 4.4862 2.0788 37 1 7.1818 2.9049 1.2795 38 1 9.4013 3.1960 0.2222 39 1 9.5273 3.3137 1.9945 40 1 9.5064 5.7767 1.8515 41 1 11.9459 3.6199 3.5703 42 1 9.4032 5.3172 -1.1657 43 1 9.5307 6.8941 -0.3481 44 1 7.1851 6.4055 -1.0110 45 1 7.3517 6.5046 0.7582 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397338097.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:52:20 Heat of formation + Delta-G solvation = -58.216641 kcal Electronic energy + Delta-G solvation = -24910.554774 eV Core-core repulsion = 21349.399572 eV Total energy + Delta-G solvation = -3561.155203 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.26296 -39.25985 -37.56661 -35.45556 -34.71365 -34.23456 -31.92666 -30.71749 -29.71168 -29.14968 -25.86449 -24.99479 -23.42689 -22.14401 -22.05853 -21.00107 -20.26239 -18.92516 -18.28203 -16.97472 -16.33277 -16.23643 -15.74236 -15.40854 -15.15668 -14.68593 -14.43928 -14.28527 -13.96495 -13.80149 -13.50246 -12.88317 -12.83370 -12.60681 -12.23410 -12.22533 -12.04563 -11.94216 -11.72898 -11.58996 -11.27317 -10.85382 -10.79196 -10.67363 -10.47236 -10.07613 -10.04961 -9.84858 -9.50594 -9.37762 -9.21446 -8.88585 -8.52237 -8.18657 -7.72222 -5.87855 -3.93010 2.17609 2.21193 3.26080 3.39540 3.43968 3.46833 3.69584 4.35567 4.53225 4.55734 4.57852 4.70818 4.93691 4.99904 5.05705 5.40600 5.42301 5.44829 5.53052 5.57459 5.58420 5.76110 5.89403 5.97958 6.01871 6.10242 6.21992 6.31171 6.38292 6.43893 6.70889 6.83801 6.94324 7.14224 7.23879 7.36305 7.54074 7.66858 7.74561 7.91639 8.15198 8.16697 8.27699 8.29211 8.58415 9.10242 9.70785 11.18353 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.028712 B = 0.003095 C = 0.002902 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.978804 B = 9044.192511 C = 9645.300138 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.129 3.871 3 N -0.743 5.743 4 C 0.691 3.309 5 O -0.528 6.528 6 N -0.694 5.694 7 C 0.516 3.484 8 O -0.434 6.434 9 C 0.068 3.932 10 H 0.107 0.893 11 C -0.186 4.186 12 N -0.514 5.514 13 C 0.044 3.956 14 C -0.100 4.100 15 C 0.048 3.952 16 C -0.510 4.510 17 H 0.053 0.947 18 C 0.060 3.940 19 N -0.892 5.892 20 Si 0.890 3.110 21 H -0.279 1.279 22 H -0.288 1.288 23 H -0.277 1.277 24 C -0.106 4.106 25 C 0.061 3.939 26 H 0.076 0.924 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.069 0.931 31 H 0.396 0.604 32 H 0.405 0.595 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.059 0.941 36 H 0.020 0.980 37 H 0.080 0.920 38 H 0.044 0.956 39 H 0.091 0.909 40 H 0.019 0.981 41 H 0.259 0.741 42 H 0.057 0.943 43 H 0.051 0.949 44 H 0.058 0.942 45 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.390 0.537 -4.727 25.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.005 3.995 3 N -0.401 5.401 4 C 0.391 3.609 5 O -0.399 6.399 6 N -0.361 5.361 7 C 0.301 3.699 8 O -0.298 6.298 9 C -0.045 4.045 10 H 0.125 0.875 11 C -0.245 4.245 12 N -0.238 5.238 13 C -0.083 4.083 14 C -0.138 4.138 15 C 0.029 3.971 16 C -0.549 4.549 17 H 0.072 0.928 18 C -0.140 4.140 19 N -0.531 5.531 20 Si 0.718 3.282 21 H -0.204 1.204 22 H -0.214 1.214 23 H -0.203 1.203 24 C -0.144 4.144 25 C -0.067 4.067 26 H 0.094 0.906 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.230 0.770 32 H 0.240 0.760 33 H 0.088 0.912 34 H 0.094 0.906 35 H 0.078 0.922 36 H 0.039 0.961 37 H 0.098 0.902 38 H 0.063 0.937 39 H 0.109 0.891 40 H 0.037 0.963 41 H 0.069 0.931 42 H 0.076 0.924 43 H 0.069 0.931 44 H 0.076 0.924 45 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges -23.870 -1.307 -4.953 24.414 hybrid contribution -0.102 1.180 0.647 1.350 sum -23.972 -0.127 -4.306 24.356 Atomic orbital electron populations 1.22010 0.94247 1.03406 1.02504 1.21224 0.93931 0.81493 1.02816 1.45320 1.05045 1.09500 1.80271 1.16193 0.82988 0.83252 0.78456 1.91095 1.54295 1.42419 1.52135 1.44297 1.09996 1.08275 1.73516 1.20946 0.80357 0.92500 0.76093 1.90824 1.53423 1.45876 1.39707 1.21650 0.92439 0.90769 0.99685 0.87529 1.22457 1.00879 1.02176 0.99013 1.62040 1.01545 1.18471 1.41762 1.22598 0.99540 0.98265 0.87877 1.21610 0.88995 1.00408 1.02829 1.18702 0.94353 0.92210 0.91833 1.21165 0.91846 1.38170 1.03686 0.92845 1.24970 0.98253 0.95502 0.95313 1.69873 1.35166 1.40047 1.07981 0.86699 0.85985 0.78104 0.77420 1.20443 1.21421 1.20313 1.21684 0.91135 1.00010 1.01578 1.22181 0.98014 0.87569 0.98888 0.90551 0.91928 0.91936 0.91322 0.91308 0.76973 0.76020 0.91243 0.90629 0.92240 0.96135 0.90200 0.93736 0.89055 0.96260 0.93094 0.92374 0.93056 0.92368 0.95267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.64 10.03 37.16 0.37 -0.27 16 2 C 0.13 0.96 6.39 -4.04 -0.03 0.94 16 3 N -0.74 -5.89 5.56 -65.24 -0.36 -6.25 16 4 C 0.69 9.00 8.50 -86.92 -0.74 8.26 16 5 O -0.53 -10.09 14.74 -18.47 -0.27 -10.36 16 6 N -0.69 -7.52 5.13 -15.78 -0.08 -7.60 16 7 C 0.52 7.94 6.77 -10.98 -0.07 7.86 16 8 O -0.43 -9.25 12.31 -18.21 -0.22 -9.48 16 9 C 0.07 0.91 2.77 -68.87 -0.19 0.72 16 10 H 0.11 1.13 8.08 -51.93 -0.42 0.71 16 11 C -0.19 -2.03 8.40 37.16 0.31 -1.72 16 12 N -0.51 -9.42 4.43 -228.08 -1.01 -10.43 16 13 C 0.04 0.94 4.48 -3.84 -0.02 0.92 16 14 C -0.10 -2.56 5.12 -26.65 -0.14 -2.70 16 15 C 0.05 1.22 2.16 -91.65 -0.20 1.02 16 16 C -0.51 -14.49 8.56 -34.44 -0.29 -14.78 16 17 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 18 C 0.06 1.73 5.31 -17.82 -0.09 1.64 16 19 N -0.89 -26.38 11.37 55.43 0.63 -25.75 16 20 Si 0.89 22.07 29.54 -169.99 -5.02 17.05 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 24 C -0.11 -2.26 5.32 -26.64 -0.14 -2.40 16 25 C 0.06 1.06 5.02 -3.83 -0.02 1.04 16 26 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 27 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.40 1.61 8.49 -40.82 -0.35 1.27 16 32 H 0.41 2.28 8.13 -40.82 -0.33 1.95 16 33 H 0.07 0.92 6.53 -51.93 -0.34 0.58 16 34 H 0.07 0.82 6.65 -51.93 -0.35 0.47 16 35 H 0.06 0.42 7.56 -51.93 -0.39 0.03 16 36 H 0.02 0.43 6.62 -51.93 -0.34 0.09 16 37 H 0.08 1.82 5.32 -51.92 -0.28 1.54 16 38 H 0.04 1.20 8.14 -51.92 -0.42 0.78 16 39 H 0.09 2.59 6.17 -51.93 -0.32 2.27 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 42 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 43 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 44 H 0.06 0.85 8.08 -51.93 -0.42 0.43 16 45 H 0.03 0.49 6.73 -51.93 -0.35 0.14 16 LS Contribution 350.93 15.07 5.29 5.29 Total: -1.00 -37.33 350.93 -9.53 -46.87 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -7.23 Total: 0.14 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: -1.25 Total: 0.53 kcal Atomic # 7 Polarization: -49.21 SS G_CDS: -0.82 Total: -50.03 kcal Atomic # 8 Polarization: -19.34 SS G_CDS: -0.50 Total: -19.84 kcal Atomic # 14 Polarization: 22.07 SS G_CDS: -5.02 Total: 17.05 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -37.33 -9.53 -46.87 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397338097.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.351 kcal (2) G-P(sol) polarization free energy of solvation -37.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds