Wall clock time and date at job start Tue Mar 31 2020 03:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46497 * 109.47526 * 2 1 4 4 C 1.34770 * 120.00415 * 179.97438 * 3 2 1 5 5 O 1.21545 * 119.99771 * 0.02562 * 4 3 2 6 6 N 1.34781 * 120.00269 * 180.02562 * 4 3 2 7 7 C 1.34778 * 119.99911 * 180.02562 * 6 4 3 8 8 O 1.21230 * 120.00123 * 0.02562 * 7 6 4 9 9 C 1.50697 * 119.99637 * 180.02562 * 7 6 4 10 10 H 1.09002 * 109.47120 * 299.99695 * 9 7 6 11 11 C 1.52997 * 109.47466 * 59.99942 * 9 7 6 12 12 N 1.46902 * 109.47181 * 180.02562 * 9 7 6 13 13 C 1.46847 * 110.99731 * 299.20827 * 12 9 7 14 14 C 1.53039 * 109.52635 * 174.15657 * 13 12 9 15 15 C 1.53121 * 109.27321 * 59.17782 * 14 13 12 16 16 C 1.53113 * 109.16518 * 302.34684 * 15 14 13 17 17 H 1.08999 * 109.53918 * 297.69692 * 16 15 14 18 18 C 1.50701 * 109.50839 * 177.59571 * 16 15 14 19 19 H 1.07997 * 119.99788 * 240.20359 * 18 16 15 20 20 C 1.37873 * 119.99716 * 60.19309 * 18 16 15 21 21 N 1.31514 * 120.00224 * 0.02562 * 20 18 16 22 22 Si 1.86802 * 119.99861 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.46844 * 90.00546 * 22 20 18 24 24 H 1.48502 * 109.47062 * 210.00380 * 22 20 18 25 25 H 1.48497 * 109.47252 * 330.00349 * 22 20 18 26 26 C 1.46846 * 111.00430 * 174.99688 * 12 9 7 27 27 H 1.09000 * 109.46986 * 299.99881 * 1 2 3 28 28 H 1.09002 * 109.47070 * 59.99710 * 1 2 3 29 29 H 1.08996 * 109.47407 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46986 * 240.00119 * 2 1 3 31 31 H 1.09002 * 109.47070 * 120.00290 * 2 1 3 32 32 H 0.97006 * 119.99824 * 0.02562 * 3 2 1 33 33 H 0.97000 * 119.99643 * 0.02562 * 6 4 3 34 34 H 1.09002 * 109.47153 * 59.99773 * 11 9 7 35 35 H 1.09001 * 109.46832 * 299.99964 * 11 9 7 36 36 H 1.09004 * 109.47261 * 179.97438 * 11 9 7 37 37 H 1.08999 * 109.46258 * 294.17720 * 13 12 9 38 38 H 1.09003 * 109.46366 * 54.14195 * 13 12 9 39 39 H 1.08999 * 109.50438 * 299.24454 * 14 13 12 40 40 H 1.08999 * 109.53647 * 179.13586 * 14 13 12 41 41 H 1.08998 * 109.52392 * 182.44066 * 15 14 13 42 42 H 1.09005 * 109.52341 * 62.25434 * 15 14 13 43 43 H 0.97002 * 119.99978 * 179.97438 * 21 20 18 44 44 H 1.08998 * 109.46258 * 305.85455 * 26 12 9 45 45 H 1.08999 * 109.45687 * 65.81880 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 3.3435 1.6274 0.0005 5 8 4.1333 0.7036 0.0005 6 7 3.7928 2.8981 0.0010 7 6 5.1179 3.1443 0.0010 8 8 5.9056 2.2228 0.0001 9 6 5.6202 4.5651 0.0022 10 1 5.2568 5.0797 -0.8873 11 6 5.1104 5.2853 1.2521 12 7 7.0892 4.5651 0.0014 13 6 7.6161 3.8949 1.1970 14 6 9.1389 3.7847 1.0924 15 6 9.7396 5.1874 0.9642 16 6 9.1383 5.8816 -0.2609 17 1 9.4009 5.3252 -1.1607 18 6 9.6799 7.2844 -0.3608 19 1 9.0057 8.1273 -0.3251 20 6 11.0361 7.4916 -0.4975 21 7 11.8570 6.4650 -0.5412 22 14 11.7075 9.2304 -0.6205 23 1 12.0187 9.7382 0.7398 24 1 12.9444 9.2264 -1.4424 25 1 10.6933 10.1088 -1.2568 26 6 7.6155 5.9309 -0.1171 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.3881 2.1185 0.0004 33 1 3.1624 3.6354 0.0014 34 1 5.4739 4.7707 2.1416 35 1 4.0204 5.2853 1.2522 36 1 5.4742 6.3129 1.2532 37 1 7.3538 4.4733 2.0829 38 1 7.1843 2.8970 1.2740 39 1 9.4017 3.1948 0.2143 40 1 9.5317 3.3010 1.9867 41 1 10.8204 5.1114 0.8459 42 1 9.5100 5.7652 1.8595 43 1 12.8112 6.6108 -0.6377 44 1 7.1832 6.4119 -0.9945 45 1 7.3531 6.4997 0.7749 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397861981.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:52:22 Heat of formation + Delta-G solvation = -59.437532 kcal Electronic energy + Delta-G solvation = -24889.193457 eV Core-core repulsion = 21327.985313 eV Total energy + Delta-G solvation = -3561.208144 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.27926 -39.26107 -37.56643 -35.47556 -34.71147 -34.13036 -32.18238 -30.73964 -29.86299 -29.00606 -25.51608 -24.90358 -23.87009 -22.48846 -21.54556 -21.13143 -20.26990 -18.92266 -18.28643 -16.98252 -16.42186 -16.29590 -15.74499 -15.24337 -15.17714 -14.65152 -14.45272 -14.23769 -14.09757 -13.67242 -13.59185 -12.90923 -12.82771 -12.54815 -12.37126 -12.24884 -12.00572 -11.95360 -11.73137 -11.67628 -11.27237 -10.92082 -10.88631 -10.65210 -10.55430 -10.16738 -9.88019 -9.75580 -9.56927 -9.39801 -9.34680 -8.87921 -8.64107 -8.25341 -7.64246 -5.93399 -4.00239 2.15133 2.20236 3.23992 3.32508 3.39507 3.41593 3.69316 4.35796 4.52498 4.54857 4.58409 4.68964 4.91979 5.04030 5.11730 5.36409 5.38615 5.48907 5.50987 5.56775 5.65665 5.87125 5.91129 5.99257 6.07293 6.08685 6.23547 6.35362 6.43240 6.44932 6.59921 6.81579 6.89829 7.00430 7.30431 7.33557 7.45404 7.68279 7.76942 7.82428 8.12394 8.13266 8.23627 8.26827 8.50931 9.03932 9.63763 11.12446 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.041513 B = 0.002906 C = 0.002808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 674.333471 B = 9631.822253 C = 9968.784620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.130 3.870 3 N -0.743 5.743 4 C 0.692 3.308 5 O -0.530 6.530 6 N -0.693 5.693 7 C 0.519 3.481 8 O -0.440 6.440 9 C 0.067 3.933 10 H 0.110 0.890 11 C -0.185 4.185 12 N -0.516 5.516 13 C 0.049 3.951 14 C -0.114 4.114 15 C -0.110 4.110 16 C 0.055 3.945 17 H 0.035 0.965 18 C -0.515 4.515 19 H 0.053 0.947 20 C 0.063 3.937 21 N -0.886 5.886 22 Si 0.890 3.110 23 H -0.282 1.282 24 H -0.287 1.287 25 H -0.275 1.275 26 C 0.068 3.932 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.397 0.603 33 H 0.406 0.594 34 H 0.065 0.935 35 H 0.058 0.942 36 H 0.078 0.922 37 H 0.021 0.979 38 H 0.082 0.918 39 H 0.061 0.939 40 H 0.045 0.955 41 H 0.090 0.910 42 H 0.028 0.972 43 H 0.260 0.740 44 H 0.060 0.940 45 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.008 -6.345 2.913 25.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.006 3.994 3 N -0.401 5.401 4 C 0.392 3.608 5 O -0.402 6.402 6 N -0.361 5.361 7 C 0.304 3.696 8 O -0.305 6.305 9 C -0.045 4.045 10 H 0.128 0.872 11 C -0.245 4.245 12 N -0.240 5.240 13 C -0.078 4.078 14 C -0.152 4.152 15 C -0.149 4.149 16 C 0.036 3.964 17 H 0.053 0.947 18 C -0.554 4.554 19 H 0.071 0.929 20 C -0.139 4.139 21 N -0.525 5.525 22 Si 0.718 3.282 23 H -0.208 1.208 24 H -0.213 1.213 25 H -0.200 1.200 26 C -0.058 4.058 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.231 0.769 33 H 0.241 0.759 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.097 0.903 37 H 0.039 0.961 38 H 0.100 0.900 39 H 0.080 0.920 40 H 0.064 0.936 41 H 0.108 0.892 42 H 0.047 0.953 43 H 0.070 0.930 44 H 0.078 0.922 45 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -22.354 -8.130 2.474 23.914 hybrid contribution -0.673 2.254 0.655 2.442 sum -23.027 -5.876 3.130 23.970 Atomic orbital electron populations 1.22011 0.94231 1.03407 1.02544 1.21221 0.93955 0.81493 1.02768 1.45326 1.05068 1.09521 1.80202 1.16199 0.82981 0.83259 0.78391 1.91083 1.54332 1.42451 1.52307 1.44317 1.10066 1.08290 1.73380 1.21038 0.80299 0.92567 0.75719 1.90782 1.53520 1.45986 1.40220 1.21673 0.92492 0.90493 0.99887 0.87220 1.22455 1.00848 1.02549 0.98605 1.62011 1.01445 1.20235 1.40326 1.22348 0.97293 0.98792 0.89357 1.21627 0.93144 1.00045 1.00394 1.21662 1.03306 0.91779 0.98107 1.18666 0.86873 0.95743 0.95096 0.94656 1.21116 0.92068 0.91935 1.50234 0.92857 1.24942 0.97119 0.96612 0.95214 1.69904 1.03164 1.29354 1.50065 0.86634 0.78508 0.85137 0.77898 1.20834 1.21281 1.20014 1.22388 0.99624 0.85037 0.98766 0.91934 0.91891 0.90551 0.91314 0.91362 0.76921 0.75914 0.91640 0.92285 0.90299 0.96108 0.89993 0.91980 0.93632 0.89190 0.95270 0.93047 0.92187 0.95711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.61 10.03 37.16 0.37 -0.24 16 2 C 0.13 0.92 6.39 -4.04 -0.03 0.90 16 3 N -0.74 -5.72 5.56 -65.24 -0.36 -6.08 16 4 C 0.69 8.77 8.50 -86.92 -0.74 8.03 16 5 O -0.53 -9.81 14.74 -18.48 -0.27 -10.08 16 6 N -0.69 -7.44 5.13 -15.78 -0.08 -7.52 16 7 C 0.52 7.87 6.77 -10.99 -0.07 7.79 16 8 O -0.44 -9.03 12.31 -18.20 -0.22 -9.25 16 9 C 0.07 0.95 2.77 -68.87 -0.19 0.76 16 10 H 0.11 1.32 8.08 -51.93 -0.42 0.90 16 11 C -0.19 -2.09 8.40 37.16 0.31 -1.78 16 12 N -0.52 -9.80 4.43 -228.08 -1.01 -10.81 16 13 C 0.05 0.96 4.48 -3.83 -0.02 0.95 16 14 C -0.11 -2.46 6.09 -26.65 -0.16 -2.63 16 15 C -0.11 -2.70 5.03 -26.61 -0.13 -2.83 16 16 C 0.06 1.39 2.26 -91.69 -0.21 1.18 16 17 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 18 C -0.51 -14.03 8.56 -34.44 -0.29 -14.32 16 19 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 20 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 21 N -0.89 -25.64 11.36 55.43 0.63 -25.01 16 22 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 26 C 0.07 1.41 4.25 -3.83 -0.02 1.39 16 27 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 28 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 29 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.40 1.58 8.49 -40.82 -0.35 1.23 16 33 H 0.41 2.33 8.13 -40.82 -0.33 2.00 16 34 H 0.06 0.82 6.53 -51.93 -0.34 0.48 16 35 H 0.06 0.44 7.56 -51.93 -0.39 0.04 16 36 H 0.08 0.94 6.65 -51.93 -0.35 0.60 16 37 H 0.02 0.39 6.62 -51.93 -0.34 0.04 16 38 H 0.08 1.66 5.32 -51.93 -0.28 1.38 16 39 H 0.06 1.43 8.14 -51.93 -0.42 1.00 16 40 H 0.04 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.09 2.46 6.17 -51.93 -0.32 2.14 16 42 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 44 H 0.06 1.19 8.08 -51.93 -0.42 0.77 16 45 H 0.02 0.50 6.73 -51.93 -0.35 0.15 16 LS Contribution 350.92 15.07 5.29 5.29 Total: -1.00 -36.04 350.92 -9.56 -45.60 By element: Atomic # 1 Polarization: 8.02 SS G_CDS: -7.23 Total: 0.79 kcal Atomic # 6 Polarization: 2.12 SS G_CDS: -1.27 Total: 0.85 kcal Atomic # 7 Polarization: -48.59 SS G_CDS: -0.83 Total: -49.42 kcal Atomic # 8 Polarization: -18.84 SS G_CDS: -0.50 Total: -19.33 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -36.04 -9.56 -45.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397861981.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.841 kcal (2) G-P(sol) polarization free energy of solvation -36.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds