Wall clock time and date at job start Tue Mar 31 2020 03:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46495 * 109.47182 * 2 1 4 4 C 1.34776 * 120.00161 * 180.02562 * 3 2 1 5 5 O 1.21541 * 119.99832 * 0.02562 * 4 3 2 6 6 N 1.34771 * 120.00359 * 179.97438 * 4 3 2 7 7 C 1.34776 * 120.00359 * 179.97438 * 6 4 3 8 8 O 1.21234 * 120.00020 * 0.02562 * 7 6 4 9 9 C 1.50698 * 120.00202 * 180.02562 * 7 6 4 10 10 H 1.08993 * 109.47343 * 314.69489 * 9 7 6 11 11 C 1.53010 * 109.46981 * 74.69399 * 9 7 6 12 12 N 1.46895 * 109.47073 * 194.68935 * 9 7 6 13 13 C 1.46856 * 110.99966 * 163.55907 * 12 9 7 14 14 C 1.53035 * 109.52660 * 185.84240 * 13 12 9 15 15 C 1.53124 * 109.27834 * 300.82291 * 14 13 12 16 16 C 1.53119 * 109.15738 * 57.65236 * 15 14 13 17 17 H 1.09006 * 109.53842 * 62.30746 * 16 15 14 18 18 C 1.50707 * 109.50107 * 182.40299 * 16 15 14 19 19 H 1.08000 * 119.99934 * 119.53318 * 18 16 15 20 20 C 1.37878 * 120.00026 * 299.80414 * 18 16 15 21 21 N 1.31516 * 119.99875 * 0.02562 * 20 18 16 22 22 Si 1.86794 * 119.99801 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47453 * 60.00273 * 22 20 18 24 24 H 1.48497 * 109.47034 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47416 * 300.00010 * 22 20 18 26 26 C 1.46846 * 111.00609 * 287.77148 * 12 9 7 27 27 H 1.08994 * 109.46718 * 60.00148 * 1 2 3 28 28 H 1.09003 * 109.47011 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.46763 * 299.99829 * 1 2 3 30 30 H 1.09001 * 109.47263 * 239.99550 * 2 1 3 31 31 H 1.09003 * 109.46782 * 119.99776 * 2 1 3 32 32 H 0.97007 * 119.99989 * 359.97438 * 3 2 1 33 33 H 0.97002 * 119.99865 * 0.02562 * 6 4 3 34 34 H 1.08993 * 109.47008 * 59.99885 * 11 9 7 35 35 H 1.09003 * 109.47108 * 180.02562 * 11 9 7 36 36 H 1.08995 * 109.46864 * 299.99892 * 11 9 7 37 37 H 1.08997 * 109.46446 * 305.86302 * 13 12 9 38 38 H 1.09004 * 109.46046 * 65.82764 * 13 12 9 39 39 H 1.08999 * 109.50035 * 60.76197 * 14 13 12 40 40 H 1.08993 * 109.50572 * 180.88355 * 14 13 12 41 41 H 1.09000 * 109.52526 * 297.75072 * 15 14 13 42 42 H 1.09001 * 109.52394 * 177.55376 * 15 14 13 43 43 H 0.97001 * 119.99580 * 179.97438 * 21 20 18 44 44 H 1.09001 * 109.45977 * 54.14571 * 26 12 9 45 45 H 1.08998 * 109.45229 * 294.17224 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3434 1.6275 -0.0005 5 8 4.1333 0.7036 -0.0015 6 7 3.7927 2.8981 -0.0010 7 6 5.1178 3.1444 -0.0010 8 8 5.9056 2.2229 -0.0010 9 6 5.6202 4.5652 -0.0010 10 1 5.0599 5.1486 -0.7315 11 6 5.4311 5.1729 1.3904 12 7 7.0464 4.5802 -0.3522 13 6 7.4782 5.9286 -0.7423 14 6 8.9248 5.8788 -1.2390 15 6 9.8238 5.3373 -0.1240 16 6 9.3235 3.9528 0.2971 17 1 9.3938 3.2673 -0.5476 18 6 10.1670 3.4375 1.4347 19 1 9.7100 3.2123 2.3869 20 6 11.5232 3.2589 1.2615 21 7 12.0807 3.5387 0.1037 22 14 12.5688 2.6210 2.6718 23 1 12.0801 1.2804 3.0834 24 1 13.9834 2.5180 2.2320 25 1 12.4740 3.5567 3.8210 26 6 7.8653 4.0584 0.7493 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5138 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.3880 2.1185 -0.0004 33 1 3.1624 3.6354 -0.0007 34 1 5.9914 4.5894 2.1209 35 1 5.7941 6.2008 1.3903 36 1 4.3729 5.1617 1.6510 37 1 6.8334 6.3003 -1.5385 38 1 7.4125 6.5941 0.1185 39 1 8.9887 5.2242 -2.1082 40 1 9.2501 6.8822 -1.5136 41 1 9.7903 6.0123 0.7312 42 1 10.8484 5.2592 -0.4878 43 1 13.0349 3.4134 -0.0180 44 1 7.5017 3.0717 1.0363 45 1 7.7978 4.7328 1.6029 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397861983.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:52:24 Heat of formation + Delta-G solvation = -60.140411 kcal Electronic energy + Delta-G solvation = -25050.400018 eV Core-core repulsion = 21489.161394 eV Total energy + Delta-G solvation = -3561.238623 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.13179 -39.16475 -37.54871 -35.38392 -34.54408 -34.08760 -32.20163 -30.67266 -29.77888 -29.01890 -25.51243 -24.87006 -23.80223 -22.49410 -21.47316 -21.00055 -20.20352 -18.85352 -18.27275 -16.94359 -16.33618 -16.19391 -15.68232 -15.13767 -15.03167 -14.67929 -14.34231 -14.12764 -14.07046 -13.72830 -13.35211 -12.85391 -12.82447 -12.52267 -12.32820 -12.18087 -12.12336 -11.87363 -11.66026 -11.56013 -11.36338 -10.82653 -10.77824 -10.59266 -10.50942 -10.05604 -9.95562 -9.75551 -9.46343 -9.32294 -9.30585 -8.84988 -8.54538 -8.18813 -7.64138 -5.85707 -3.90528 2.28808 2.30272 3.35844 3.40880 3.44795 3.48408 3.76729 4.40643 4.58517 4.62007 4.68187 4.75296 4.97966 5.06707 5.09861 5.44226 5.45631 5.52756 5.57903 5.60466 5.62980 5.71581 5.84617 6.02057 6.09896 6.15611 6.17223 6.28713 6.46855 6.51153 6.67421 6.74564 6.82274 7.15165 7.29571 7.39671 7.50481 7.66927 7.81684 7.88061 8.22710 8.28130 8.30692 8.38447 8.60836 9.13031 9.72634 11.20716 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.018940 B = 0.003644 C = 0.003235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.965357 B = 7681.403242 C = 8653.642276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.129 3.871 3 N -0.744 5.744 4 C 0.691 3.309 5 O -0.527 6.527 6 N -0.694 5.694 7 C 0.515 3.485 8 O -0.430 6.430 9 C 0.069 3.931 10 H 0.100 0.900 11 C -0.182 4.182 12 N -0.519 5.519 13 C 0.064 3.936 14 C -0.117 4.117 15 C -0.112 4.112 16 C 0.057 3.943 17 H 0.035 0.965 18 C -0.510 4.510 19 H 0.052 0.948 20 C 0.062 3.938 21 N -0.890 5.890 22 Si 0.890 3.110 23 H -0.277 1.277 24 H -0.288 1.288 25 H -0.279 1.279 26 C 0.061 3.939 27 H 0.061 0.939 28 H 0.075 0.925 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.396 0.604 33 H 0.404 0.596 34 H 0.073 0.927 35 H 0.071 0.929 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.027 0.973 39 H 0.061 0.939 40 H 0.048 0.952 41 H 0.029 0.971 42 H 0.091 0.909 43 H 0.259 0.741 44 H 0.078 0.922 45 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.672 3.934 -1.159 25.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.005 3.995 3 N -0.402 5.402 4 C 0.391 3.609 5 O -0.398 6.398 6 N -0.362 5.362 7 C 0.300 3.700 8 O -0.294 6.294 9 C -0.044 4.044 10 H 0.118 0.882 11 C -0.241 4.241 12 N -0.243 5.243 13 C -0.063 4.063 14 C -0.155 4.155 15 C -0.150 4.150 16 C 0.038 3.962 17 H 0.053 0.947 18 C -0.548 4.548 19 H 0.070 0.930 20 C -0.139 4.139 21 N -0.529 5.529 22 Si 0.718 3.282 23 H -0.203 1.203 24 H -0.214 1.214 25 H -0.205 1.205 26 C -0.065 4.065 27 H 0.080 0.920 28 H 0.094 0.906 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.230 0.770 33 H 0.238 0.762 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.045 0.955 39 H 0.080 0.920 40 H 0.066 0.934 41 H 0.048 0.952 42 H 0.109 0.891 43 H 0.069 0.931 44 H 0.096 0.904 45 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -23.107 2.134 -1.660 23.265 hybrid contribution -0.347 1.036 1.436 1.804 sum -23.454 3.170 -0.224 23.669 Atomic orbital electron populations 1.22006 0.94306 1.03362 1.02463 1.21216 0.93869 0.81571 1.02815 1.45320 1.05075 1.09425 1.80415 1.16207 0.82941 0.83319 0.78481 1.91105 1.54251 1.42428 1.52026 1.44308 1.10006 1.08170 1.73679 1.20983 0.80307 0.92547 0.76194 1.90871 1.53416 1.45743 1.39346 1.21568 0.93881 0.91285 0.97646 0.88246 1.22406 1.02033 1.02308 0.97322 1.61951 0.98804 1.22888 1.40700 1.22079 0.97799 0.88262 0.98179 1.21673 0.93542 0.99597 1.00667 1.21678 1.01017 0.97516 0.94755 1.18631 0.87539 0.93334 0.96692 0.94679 1.21104 0.92638 1.43173 0.97929 0.93013 1.24919 0.97914 0.95502 0.95543 1.69887 1.11223 1.48889 1.22924 0.86700 0.79291 0.79552 0.82676 1.20286 1.21374 1.20474 1.22538 0.96006 0.98661 0.89304 0.91951 0.90588 0.91968 0.91325 0.91341 0.77036 0.76164 0.90804 0.91002 0.92273 0.92379 0.95459 0.91990 0.93382 0.95208 0.89100 0.93126 0.90392 0.96144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.72 10.03 37.16 0.37 -0.34 16 2 C 0.13 1.04 6.39 -4.04 -0.03 1.01 16 3 N -0.74 -6.36 5.56 -65.24 -0.36 -6.72 16 4 C 0.69 9.54 8.50 -86.92 -0.74 8.80 16 5 O -0.53 -10.59 14.74 -18.48 -0.27 -10.86 16 6 N -0.69 -8.04 5.24 -15.78 -0.08 -8.13 16 7 C 0.52 8.43 6.91 -10.99 -0.08 8.36 16 8 O -0.43 -9.82 12.71 -18.21 -0.23 -10.05 16 9 C 0.07 0.98 2.70 -68.86 -0.19 0.79 16 10 H 0.10 1.05 7.86 -51.93 -0.41 0.64 16 11 C -0.18 -2.19 8.30 37.16 0.31 -1.88 16 12 N -0.52 -9.81 4.35 -228.08 -0.99 -10.80 16 13 C 0.06 1.09 5.22 -3.83 -0.02 1.07 16 14 C -0.12 -2.30 6.09 -26.65 -0.16 -2.46 16 15 C -0.11 -2.71 5.03 -26.61 -0.13 -2.84 16 16 C 0.06 1.52 2.26 -91.69 -0.21 1.31 16 17 H 0.04 1.07 8.14 -51.93 -0.42 0.64 16 18 C -0.51 -14.82 8.56 -34.44 -0.29 -15.11 16 19 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 20 C 0.06 1.80 5.30 -17.82 -0.09 1.71 16 21 N -0.89 -26.52 11.36 55.43 0.63 -25.89 16 22 Si 0.89 22.34 29.54 -169.99 -5.02 17.31 16 23 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 24 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 25 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 26 C 0.06 1.39 3.39 -3.84 -0.01 1.37 16 27 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 28 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 32 H 0.40 1.82 8.49 -40.82 -0.35 1.47 16 33 H 0.40 2.47 8.71 -40.82 -0.36 2.12 16 34 H 0.07 1.09 6.44 -51.93 -0.33 0.76 16 35 H 0.07 0.83 7.09 -51.93 -0.37 0.46 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.81 7.95 -51.93 -0.41 0.40 16 38 H 0.03 0.44 7.13 -51.93 -0.37 0.07 16 39 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 40 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.09 2.47 6.16 -51.93 -0.32 2.15 16 43 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 44 H 0.08 1.95 5.90 -51.93 -0.31 1.64 16 45 H 0.02 0.45 6.59 -51.93 -0.34 0.11 16 LS Contribution 353.31 15.07 5.32 5.32 Total: -1.00 -38.06 353.31 -9.61 -47.67 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -7.33 Total: 0.35 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: -1.27 Total: 1.78 kcal Atomic # 7 Polarization: -50.73 SS G_CDS: -0.81 Total: -51.53 kcal Atomic # 8 Polarization: -20.41 SS G_CDS: -0.50 Total: -20.91 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -38.06 -9.61 -47.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397861983.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.466 kcal (2) G-P(sol) polarization free energy of solvation -38.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds