Wall clock time and date at job start Tue Mar 31 2020 03:52:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46495 * 109.47182 * 2 1 4 4 C 1.34776 * 120.00161 * 180.02562 * 3 2 1 5 5 O 1.21541 * 119.99832 * 0.02562 * 4 3 2 6 6 N 1.34771 * 120.00359 * 179.97438 * 4 3 2 7 7 C 1.34776 * 120.00359 * 179.97438 * 6 4 3 8 8 O 1.21234 * 120.00020 * 0.02562 * 7 6 4 9 9 C 1.50698 * 120.00202 * 180.02562 * 7 6 4 10 10 H 1.08993 * 109.47343 * 314.69489 * 9 7 6 11 11 C 1.53010 * 109.46981 * 74.69399 * 9 7 6 12 12 N 1.46895 * 109.47073 * 194.68935 * 9 7 6 13 13 C 1.46856 * 110.99966 * 163.55907 * 12 9 7 14 14 C 1.53035 * 109.52660 * 185.84240 * 13 12 9 15 15 C 1.53124 * 109.27834 * 300.82291 * 14 13 12 16 16 C 1.53119 * 109.15738 * 57.65236 * 15 14 13 17 17 H 1.09006 * 109.53842 * 62.30746 * 16 15 14 18 18 C 1.50707 * 109.50107 * 182.40299 * 16 15 14 19 19 H 1.08000 * 119.99934 * 119.53318 * 18 16 15 20 20 C 1.37878 * 120.00026 * 299.80414 * 18 16 15 21 21 N 1.31516 * 119.99875 * 0.02562 * 20 18 16 22 22 Si 1.86794 * 119.99801 * 179.97438 * 20 18 16 23 23 H 1.48504 * 109.47453 * 60.00273 * 22 20 18 24 24 H 1.48497 * 109.47034 * 179.97438 * 22 20 18 25 25 H 1.48502 * 109.47416 * 300.00010 * 22 20 18 26 26 C 1.46846 * 111.00609 * 287.77148 * 12 9 7 27 27 H 1.08994 * 109.46718 * 60.00148 * 1 2 3 28 28 H 1.09003 * 109.47011 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.46763 * 299.99829 * 1 2 3 30 30 H 1.09001 * 109.47263 * 239.99550 * 2 1 3 31 31 H 1.09003 * 109.46782 * 119.99776 * 2 1 3 32 32 H 0.97007 * 119.99989 * 359.97438 * 3 2 1 33 33 H 0.97002 * 119.99865 * 0.02562 * 6 4 3 34 34 H 1.08993 * 109.47008 * 59.99885 * 11 9 7 35 35 H 1.09003 * 109.47108 * 180.02562 * 11 9 7 36 36 H 1.08995 * 109.46864 * 299.99892 * 11 9 7 37 37 H 1.08997 * 109.46446 * 305.86302 * 13 12 9 38 38 H 1.09004 * 109.46046 * 65.82764 * 13 12 9 39 39 H 1.08999 * 109.50035 * 60.76197 * 14 13 12 40 40 H 1.08993 * 109.50572 * 180.88355 * 14 13 12 41 41 H 1.09000 * 109.52526 * 297.75072 * 15 14 13 42 42 H 1.09001 * 109.52394 * 177.55376 * 15 14 13 43 43 H 0.97001 * 119.99580 * 179.97438 * 21 20 18 44 44 H 1.09001 * 109.45977 * 54.14571 * 26 12 9 45 45 H 1.08998 * 109.45229 * 294.17224 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 3.3434 1.6275 -0.0005 5 8 4.1333 0.7036 -0.0015 6 7 3.7927 2.8981 -0.0010 7 6 5.1178 3.1444 -0.0010 8 8 5.9056 2.2229 -0.0010 9 6 5.6202 4.5652 -0.0010 10 1 5.0599 5.1486 -0.7315 11 6 5.4311 5.1729 1.3904 12 7 7.0464 4.5802 -0.3522 13 6 7.4782 5.9286 -0.7423 14 6 8.9248 5.8788 -1.2390 15 6 9.8238 5.3373 -0.1240 16 6 9.3235 3.9528 0.2971 17 1 9.3938 3.2673 -0.5476 18 6 10.1670 3.4375 1.4347 19 1 9.7100 3.2123 2.3869 20 6 11.5232 3.2589 1.2615 21 7 12.0807 3.5387 0.1037 22 14 12.5688 2.6210 2.6718 23 1 12.0801 1.2804 3.0834 24 1 13.9834 2.5180 2.2320 25 1 12.4740 3.5567 3.8210 26 6 7.8653 4.0584 0.7493 27 1 -0.3632 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3632 0.5138 0.8900 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.3880 2.1185 -0.0004 33 1 3.1624 3.6354 -0.0007 34 1 5.9914 4.5894 2.1209 35 1 5.7941 6.2008 1.3903 36 1 4.3729 5.1617 1.6510 37 1 6.8334 6.3003 -1.5385 38 1 7.4125 6.5941 0.1185 39 1 8.9887 5.2242 -2.1082 40 1 9.2501 6.8822 -1.5136 41 1 9.7903 6.0123 0.7312 42 1 10.8484 5.2592 -0.4878 43 1 13.0349 3.4134 -0.0180 44 1 7.5017 3.0717 1.0363 45 1 7.7978 4.7328 1.6029 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397861983.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:52:24 Heat of formation + Delta-G solvation = -90.678122 kcal Electronic energy + Delta-G solvation = -25051.724232 eV Core-core repulsion = 21489.161394 eV Total energy + Delta-G solvation = -3562.562838 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.30883 -40.48571 -38.97833 -36.36161 -35.96628 -35.64491 -34.01918 -31.66752 -31.42022 -30.33430 -26.98171 -26.59812 -24.93750 -23.57684 -23.13528 -22.26718 -21.43079 -20.19652 -19.70600 -18.43353 -18.12236 -17.23998 -16.90871 -16.59768 -16.31102 -15.94220 -15.74270 -15.52041 -15.27264 -14.95323 -14.80571 -14.54818 -14.32737 -13.91911 -13.39439 -13.32334 -13.24071 -13.02129 -12.82440 -12.72289 -12.68063 -12.52994 -12.42201 -12.38184 -11.93513 -11.78444 -11.61918 -11.36947 -11.22787 -10.98615 -10.77397 -10.40002 -10.35433 -10.16516 -9.07642 -8.09101 -6.23207 1.08203 1.30218 1.36303 1.40119 1.47172 2.24043 2.41032 2.84884 3.16893 3.17176 3.70311 3.99014 4.08214 4.11480 4.23277 4.29213 4.33844 4.44050 4.53304 4.63238 4.68637 4.71870 4.85866 4.88506 4.91294 5.02827 5.07924 5.10414 5.14119 5.23487 5.26890 5.31384 5.37595 5.42990 5.50817 5.59819 5.63417 5.95714 6.17322 6.22800 6.33565 6.46296 6.65514 6.89368 7.20733 7.37924 7.43778 8.95669 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.018940 B = 0.003644 C = 0.003235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.965357 B = 7681.403242 C = 8653.642276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.123 3.877 3 N -0.715 5.715 4 C 0.684 3.316 5 O -0.597 6.597 6 N -0.669 5.669 7 C 0.515 3.485 8 O -0.507 6.507 9 C 0.072 3.928 10 H 0.155 0.845 11 C -0.176 4.176 12 N -0.545 5.545 13 C 0.068 3.932 14 C -0.113 4.113 15 C -0.103 4.103 16 C 0.054 3.946 17 H -0.021 1.021 18 C -0.538 4.538 19 H 0.044 0.956 20 C 0.012 3.988 21 N -0.916 5.916 22 Si 0.955 3.045 23 H -0.279 1.279 24 H -0.279 1.279 25 H -0.265 1.265 26 C 0.086 3.914 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.075 0.925 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.420 0.580 33 H 0.434 0.566 34 H 0.036 0.964 35 H 0.087 0.913 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.045 0.955 39 H 0.042 0.958 40 H 0.079 0.921 41 H 0.029 0.971 42 H 0.054 0.946 43 H 0.261 0.739 44 H 0.044 0.956 45 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.072 6.684 -0.814 28.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.001 4.001 3 N -0.374 5.374 4 C 0.385 3.615 5 O -0.473 6.473 6 N -0.338 5.338 7 C 0.302 3.698 8 O -0.376 6.376 9 C -0.040 4.040 10 H 0.172 0.828 11 C -0.234 4.234 12 N -0.269 5.269 13 C -0.058 4.058 14 C -0.151 4.151 15 C -0.141 4.141 16 C 0.035 3.965 17 H -0.003 1.003 18 C -0.577 4.577 19 H 0.063 0.937 20 C -0.186 4.186 21 N -0.555 5.555 22 Si 0.780 3.220 23 H -0.204 1.204 24 H -0.204 1.204 25 H -0.190 1.190 26 C -0.041 4.041 27 H 0.094 0.906 28 H 0.103 0.897 29 H 0.094 0.906 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.259 0.741 33 H 0.274 0.726 34 H 0.056 0.944 35 H 0.105 0.895 36 H 0.122 0.878 37 H 0.122 0.878 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.097 0.903 41 H 0.048 0.952 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.062 0.938 45 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -26.638 4.972 -1.317 27.130 hybrid contribution 0.613 0.137 1.283 1.429 sum -26.025 5.110 -0.034 26.522 Atomic orbital electron populations 1.21943 0.90712 1.04413 1.03768 1.21350 0.96592 0.80855 1.01286 1.45140 1.03468 1.10718 1.78097 1.16550 0.83963 0.83095 0.77935 1.91075 1.56461 1.44621 1.55109 1.43891 1.09203 1.08617 1.72081 1.21621 0.81049 0.92902 0.74238 1.90866 1.55691 1.48025 1.43031 1.21803 0.91148 0.90360 1.00645 0.82813 1.22374 1.04550 1.01949 0.94544 1.61694 1.01173 1.24554 1.39481 1.22129 0.96219 0.87313 1.00169 1.21606 0.95098 1.00382 0.97968 1.21445 1.00113 0.96221 0.96330 1.18552 0.90533 0.93445 0.93993 1.00274 1.21494 0.93688 1.44004 0.98488 0.93740 1.25746 0.99115 0.95590 0.98184 1.70042 1.11472 1.49322 1.24667 0.85671 0.77665 0.78864 0.79811 1.20435 1.20394 1.18985 1.21963 0.93950 0.97513 0.90697 0.90562 0.89739 0.90612 0.92985 0.93047 0.74150 0.72563 0.94443 0.89465 0.87809 0.87771 0.93668 0.93954 0.90265 0.95194 0.92734 0.93032 0.93784 0.95482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 10.03 71.98 0.72 -0.19 16 2 C 0.12 1.89 6.39 86.38 0.55 2.44 16 3 N -0.71 -10.91 5.56 -478.59 -2.66 -13.57 16 4 C 0.68 18.63 8.50 179.06 1.52 20.15 16 5 O -0.60 -25.26 14.74 18.92 0.28 -24.98 16 6 N -0.67 -14.15 5.24 -440.54 -2.31 -16.46 16 7 C 0.52 16.56 6.91 87.66 0.61 17.16 16 8 O -0.51 -24.48 12.71 19.87 0.25 -24.23 16 9 C 0.07 1.83 2.70 44.17 0.12 1.95 16 10 H 0.15 2.27 7.86 -2.39 -0.02 2.25 16 11 C -0.18 -3.59 8.30 71.99 0.60 -2.99 16 12 N -0.54 -20.05 4.35 -875.51 -3.81 -23.85 16 13 C 0.07 2.08 5.22 86.32 0.45 2.53 16 14 C -0.11 -4.33 6.09 30.65 0.19 -4.14 16 15 C -0.10 -5.15 5.03 30.68 0.15 -5.00 16 16 C 0.05 3.03 2.26 -11.49 -0.03 3.00 16 17 H -0.02 -1.39 8.14 -2.38 -0.02 -1.41 16 18 C -0.54 -32.99 8.56 25.60 0.22 -32.77 16 19 H 0.04 2.70 7.74 -2.91 -0.02 2.68 16 20 C 0.01 0.73 5.30 84.65 0.45 1.18 16 21 N -0.92 -57.00 11.36 21.45 0.24 -56.75 16 22 Si 0.95 47.17 29.54 68.60 2.03 49.20 16 23 H -0.28 -13.75 7.11 99.48 0.71 -13.05 16 24 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 25 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 26 C 0.09 4.06 3.39 86.32 0.29 4.35 16 27 H 0.08 0.29 8.14 -2.39 -0.02 0.27 16 28 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.07 0.29 8.14 -2.39 -0.02 0.28 16 30 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.42 2.29 8.49 -92.70 -0.79 1.51 16 33 H 0.43 3.38 8.71 -92.71 -0.81 2.57 16 34 H 0.04 1.05 6.44 -2.39 -0.02 1.04 16 35 H 0.09 1.57 7.09 -2.39 -0.02 1.55 16 36 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.10 2.30 7.95 -2.39 -0.02 2.28 16 38 H 0.05 1.25 7.13 -2.38 -0.02 1.23 16 39 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 41 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.05 3.10 6.16 -2.39 -0.01 3.09 16 43 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 44 H 0.04 2.36 5.90 -2.39 -0.01 2.35 16 45 H 0.03 1.21 6.59 -2.39 -0.02 1.20 16 Total: -1.00 -94.90 353.31 -0.72 -95.62 By element: Atomic # 1 Polarization: 7.92 SS G_CDS: -0.59 Total: 7.32 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: 5.85 Total: 7.69 kcal Atomic # 7 Polarization: -102.10 SS G_CDS: -8.53 Total: -110.63 kcal Atomic # 8 Polarization: -49.74 SS G_CDS: 0.53 Total: -49.21 kcal Atomic # 14 Polarization: 47.17 SS G_CDS: 2.03 Total: 49.20 kcal Total: -94.90 -0.72 -95.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397861983.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.944 kcal (2) G-P(sol) polarization free energy of solvation -94.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds