Wall clock time and date at job start Tue Mar 31 2020 03:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.47095 * 2 1 4 4 C 1.34775 * 120.00358 * 179.97438 * 3 2 1 5 5 O 1.21540 * 119.99951 * 359.97438 * 4 3 2 6 6 N 1.34772 * 120.00299 * 179.97438 * 4 3 2 7 7 C 1.34775 * 120.00299 * 179.97438 * 6 4 3 8 8 O 1.21231 * 119.99825 * 0.02562 * 7 6 4 9 9 C 1.50704 * 120.00057 * 179.97438 * 7 6 4 10 10 H 1.08997 * 109.47017 * 50.30193 * 9 7 6 11 11 C 1.53002 * 109.47008 * 290.30517 * 9 7 6 12 12 N 1.46897 * 109.46728 * 170.30367 * 9 7 6 13 13 C 1.46849 * 110.99729 * 193.38217 * 12 9 7 14 14 C 1.53035 * 109.52353 * 174.16378 * 13 12 9 15 15 C 1.53120 * 109.31386 * 59.15932 * 14 13 12 16 16 C 1.53123 * 109.15516 * 302.40583 * 15 14 13 17 17 H 1.09004 * 109.50318 * 297.63459 * 16 15 14 18 18 C 1.50709 * 109.50338 * 177.55401 * 16 15 14 19 19 H 1.07997 * 120.00169 * 245.66216 * 18 16 15 20 20 C 1.37877 * 119.99822 * 65.66558 * 18 16 15 21 21 N 1.31515 * 120.00001 * 5.94902 * 20 18 16 22 22 Si 1.86790 * 120.00094 * 185.95040 * 20 18 16 23 23 H 1.48503 * 109.47295 * 94.80194 * 22 20 18 24 24 H 1.48499 * 109.47443 * 214.80391 * 22 20 18 25 25 H 1.48506 * 109.47130 * 334.80533 * 22 20 18 26 26 C 1.46846 * 111.00038 * 69.17357 * 12 9 7 27 27 H 1.08997 * 109.47225 * 60.00641 * 1 2 3 28 28 H 1.09000 * 109.46915 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47157 * 299.99917 * 1 2 3 30 30 H 1.08995 * 109.47732 * 240.00056 * 2 1 3 31 31 H 1.09007 * 109.47274 * 119.99299 * 2 1 3 32 32 H 0.97009 * 119.99621 * 0.02562 * 3 2 1 33 33 H 0.97009 * 119.99680 * 0.02562 * 6 4 3 34 34 H 1.08997 * 109.46967 * 299.99706 * 11 9 7 35 35 H 1.08993 * 109.47206 * 60.00236 * 11 9 7 36 36 H 1.08998 * 109.46716 * 180.02562 * 11 9 7 37 37 H 1.09003 * 109.46386 * 54.14445 * 13 12 9 38 38 H 1.09002 * 109.45588 * 294.17000 * 13 12 9 39 39 H 1.09003 * 109.50350 * 179.12219 * 14 13 12 40 40 H 1.09004 * 109.50250 * 299.19835 * 14 13 12 41 41 H 1.09001 * 109.52052 * 62.26500 * 15 14 13 42 42 H 1.08994 * 109.52400 * 182.46432 * 15 14 13 43 43 H 0.96996 * 120.00017 * 180.02562 * 21 20 18 44 44 H 1.08994 * 109.46473 * 305.85434 * 26 12 9 45 45 H 1.09003 * 109.46337 * 65.82032 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 3.3434 1.6276 0.0005 5 8 4.1332 0.7039 0.0015 6 7 3.7926 2.8983 0.0000 7 6 5.1176 3.1446 0.0010 8 8 5.9054 2.2232 0.0020 9 6 5.6199 4.5655 -0.0001 10 1 5.1213 5.1277 0.7894 11 6 5.3192 5.2116 -1.3541 12 7 7.0700 4.5724 0.2346 13 6 7.5448 5.9245 0.5550 14 6 9.0263 5.8698 0.9345 15 6 9.8276 5.2910 -0.2348 16 6 9.2809 3.9031 -0.5804 17 1 9.4127 3.2373 0.2725 18 6 10.0247 3.3510 -1.7693 19 1 9.5061 3.1879 -2.7025 20 6 11.3671 3.0542 -1.6655 21 7 11.9716 3.1412 -0.5008 22 14 12.3271 2.5285 -3.1791 23 1 12.9938 3.7124 -3.7784 24 1 13.3523 1.5264 -2.7917 25 1 11.3985 1.9286 -4.1707 26 6 7.7920 4.0148 -0.9161 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5137 0.8901 32 1 1.3879 2.1186 0.0004 33 1 3.1621 3.6356 -0.0004 34 1 5.8178 4.6493 -2.1436 35 1 4.2433 5.2065 -1.5282 36 1 5.6829 6.2391 -1.3550 37 1 6.9700 6.3227 1.3912 38 1 7.4162 6.5699 -0.3141 39 1 9.3823 6.8757 1.1571 40 1 9.1539 5.2361 1.8122 41 1 9.7321 5.9456 -1.1012 42 1 10.8772 5.2097 0.0477 43 1 12.9161 2.9327 -0.4278 44 1 7.3968 3.0259 -1.1484 45 1 7.6622 4.6692 -1.7782 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000397861987.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:52:28 Heat of formation + Delta-G solvation = -60.720638 kcal Electronic energy + Delta-G solvation = -25068.558408 eV Core-core repulsion = 21507.294624 eV Total energy + Delta-G solvation = -3561.263784 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.13619 -39.17250 -37.54279 -35.37739 -34.55863 -34.06587 -32.21340 -30.67210 -29.78245 -29.05407 -25.49428 -24.85553 -23.82307 -22.51428 -21.49129 -21.00700 -20.19762 -18.86651 -18.29596 -16.92024 -16.33569 -16.18889 -15.67553 -15.14808 -15.05407 -14.66618 -14.35011 -14.11734 -14.06047 -13.74585 -13.38106 -12.86662 -12.82607 -12.53994 -12.33607 -12.17554 -12.09654 -11.87635 -11.67269 -11.59684 -11.37090 -10.86370 -10.76092 -10.59849 -10.51799 -10.08609 -9.96102 -9.81477 -9.48143 -9.30409 -9.25768 -8.82193 -8.57604 -8.19356 -7.64489 -5.87412 -3.89356 2.29368 2.30468 3.36405 3.38931 3.45859 3.49946 3.77032 4.39568 4.58863 4.62529 4.67547 4.75811 4.98465 5.06778 5.09498 5.44330 5.46173 5.51199 5.58470 5.58834 5.63450 5.70562 5.82260 5.99601 6.10152 6.13948 6.17712 6.26538 6.45675 6.50689 6.66380 6.71385 6.77622 7.13274 7.26961 7.35697 7.48294 7.65294 7.80139 7.87220 8.15941 8.27223 8.29295 8.39041 8.60658 9.15207 9.73173 11.21715 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.018189 B = 0.003716 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.026572 B = 7532.298868 C = 8555.239993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.129 3.871 3 N -0.744 5.744 4 C 0.691 3.309 5 O -0.527 6.527 6 N -0.694 5.694 7 C 0.514 3.486 8 O -0.428 6.428 9 C 0.069 3.931 10 H 0.101 0.899 11 C -0.183 4.183 12 N -0.519 5.519 13 C 0.065 3.935 14 C -0.117 4.117 15 C -0.107 4.107 16 C 0.056 3.944 17 H 0.041 0.959 18 C -0.510 4.510 19 H 0.052 0.948 20 C 0.063 3.937 21 N -0.888 5.888 22 Si 0.887 3.113 23 H -0.283 1.283 24 H -0.287 1.287 25 H -0.275 1.275 26 C 0.060 3.940 27 H 0.061 0.939 28 H 0.075 0.925 29 H 0.061 0.939 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.396 0.604 33 H 0.404 0.596 34 H 0.072 0.928 35 H 0.058 0.942 36 H 0.071 0.929 37 H 0.059 0.941 38 H 0.028 0.972 39 H 0.048 0.952 40 H 0.063 0.937 41 H 0.031 0.969 42 H 0.076 0.924 43 H 0.258 0.742 44 H 0.080 0.920 45 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.496 4.746 2.109 25.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.005 3.995 3 N -0.402 5.402 4 C 0.390 3.610 5 O -0.398 6.398 6 N -0.362 5.362 7 C 0.298 3.702 8 O -0.292 6.292 9 C -0.044 4.044 10 H 0.119 0.881 11 C -0.242 4.242 12 N -0.243 5.243 13 C -0.063 4.063 14 C -0.155 4.155 15 C -0.145 4.145 16 C 0.037 3.963 17 H 0.060 0.940 18 C -0.549 4.549 19 H 0.070 0.930 20 C -0.138 4.138 21 N -0.527 5.527 22 Si 0.715 3.285 23 H -0.209 1.209 24 H -0.213 1.213 25 H -0.200 1.200 26 C -0.066 4.066 27 H 0.080 0.920 28 H 0.094 0.906 29 H 0.080 0.920 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.230 0.770 33 H 0.238 0.762 34 H 0.091 0.909 35 H 0.077 0.923 36 H 0.090 0.910 37 H 0.077 0.923 38 H 0.046 0.954 39 H 0.067 0.933 40 H 0.081 0.919 41 H 0.050 0.950 42 H 0.094 0.906 43 H 0.068 0.932 44 H 0.098 0.902 45 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -22.906 2.924 2.604 23.238 hybrid contribution -0.392 1.084 -1.489 1.884 sum -23.298 4.008 1.114 23.667 Atomic orbital electron populations 1.22006 0.94310 1.03362 1.02458 1.21216 0.93862 0.81567 1.02822 1.45321 1.05070 1.09423 1.80425 1.16204 0.82945 0.83313 0.78496 1.91107 1.54237 1.42424 1.51995 1.44302 1.09995 1.08173 1.73696 1.20960 0.80333 0.92538 0.76330 1.90878 1.53371 1.45708 1.39208 1.21578 0.93326 0.91207 0.98266 0.88069 1.22420 1.01678 1.02167 0.97958 1.61974 0.99229 1.21620 1.41453 1.22062 0.97425 0.88314 0.98491 1.21660 0.93307 0.99561 1.00946 1.21622 1.00828 0.97936 0.94114 1.18643 0.87246 0.92988 0.97445 0.94044 1.21118 0.94205 1.42341 0.97259 0.92977 1.24922 0.97881 0.95417 0.95576 1.69963 1.10610 1.49379 1.22737 0.86658 0.79933 0.78238 0.83642 1.20906 1.21307 1.19955 1.22554 0.97415 0.98531 0.88097 0.91961 0.90590 0.91964 0.91328 0.91329 0.77044 0.76171 0.90892 0.92260 0.90985 0.92295 0.95419 0.93350 0.91854 0.95008 0.90586 0.93193 0.90221 0.96297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.72 10.03 37.16 0.37 -0.35 16 2 C 0.13 1.05 6.39 -4.04 -0.03 1.02 16 3 N -0.74 -6.39 5.56 -65.23 -0.36 -6.76 16 4 C 0.69 9.57 8.50 -86.92 -0.74 8.83 16 5 O -0.53 -10.63 14.74 -18.47 -0.27 -10.90 16 6 N -0.69 -8.06 5.24 -15.78 -0.08 -8.14 16 7 C 0.51 8.42 6.86 -10.98 -0.08 8.34 16 8 O -0.43 -9.81 12.60 -18.21 -0.23 -10.04 16 9 C 0.07 0.98 2.70 -68.86 -0.19 0.79 16 10 H 0.10 1.07 7.92 -51.93 -0.41 0.66 16 11 C -0.18 -2.15 8.37 37.16 0.31 -1.84 16 12 N -0.52 -9.76 4.36 -228.08 -0.99 -10.76 16 13 C 0.06 1.08 5.19 -3.83 -0.02 1.06 16 14 C -0.12 -2.27 6.09 -26.65 -0.16 -2.43 16 15 C -0.11 -2.56 5.09 -26.61 -0.14 -2.70 16 16 C 0.06 1.48 2.13 -91.68 -0.20 1.29 16 17 H 0.04 1.27 8.11 -51.93 -0.42 0.85 16 18 C -0.51 -14.86 8.49 -34.44 -0.29 -15.15 16 19 H 0.05 1.51 7.76 -52.49 -0.41 1.10 16 20 C 0.06 1.85 5.27 -17.82 -0.09 1.75 16 21 N -0.89 -26.76 12.03 55.43 0.67 -26.09 16 22 Si 0.89 22.36 29.54 -169.99 -5.02 17.33 16 23 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 25 H -0.27 -6.87 7.11 56.52 0.40 -6.47 16 26 C 0.06 1.36 3.49 -3.83 -0.01 1.35 16 27 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 28 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.40 1.83 8.49 -40.82 -0.35 1.49 16 33 H 0.40 2.48 8.71 -40.82 -0.36 2.13 16 34 H 0.07 1.06 6.44 -51.93 -0.33 0.72 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.81 6.95 -51.93 -0.36 0.44 16 37 H 0.06 0.82 7.98 -51.93 -0.41 0.40 16 38 H 0.03 0.44 7.00 -51.93 -0.36 0.08 16 39 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 41 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.08 2.03 6.85 -51.93 -0.36 1.68 16 43 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 44 H 0.08 2.01 5.77 -51.93 -0.30 1.71 16 45 H 0.02 0.41 6.57 -51.93 -0.34 0.07 16 LS Contribution 354.12 15.07 5.34 5.34 Total: -1.00 -38.36 354.12 -9.57 -47.93 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -7.35 Total: 0.12 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: -1.26 Total: 1.97 kcal Atomic # 7 Polarization: -50.97 SS G_CDS: -0.77 Total: -51.75 kcal Atomic # 8 Polarization: -20.43 SS G_CDS: -0.50 Total: -20.94 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -38.36 -9.57 -47.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397861987.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.790 kcal (2) G-P(sol) polarization free energy of solvation -38.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds