Wall clock time and date at job start Tue Mar 31 2020 03:52:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.47095 * 2 1 4 4 C 1.34775 * 120.00358 * 179.97438 * 3 2 1 5 5 O 1.21540 * 119.99951 * 359.97438 * 4 3 2 6 6 N 1.34772 * 120.00299 * 179.97438 * 4 3 2 7 7 C 1.34775 * 120.00299 * 179.97438 * 6 4 3 8 8 O 1.21231 * 119.99825 * 0.02562 * 7 6 4 9 9 C 1.50704 * 120.00057 * 179.97438 * 7 6 4 10 10 H 1.08997 * 109.47017 * 50.30193 * 9 7 6 11 11 C 1.53002 * 109.47008 * 290.30517 * 9 7 6 12 12 N 1.46897 * 109.46728 * 170.30367 * 9 7 6 13 13 C 1.46849 * 110.99729 * 193.38217 * 12 9 7 14 14 C 1.53035 * 109.52353 * 174.16378 * 13 12 9 15 15 C 1.53120 * 109.31386 * 59.15932 * 14 13 12 16 16 C 1.53123 * 109.15516 * 302.40583 * 15 14 13 17 17 H 1.09004 * 109.50318 * 297.63459 * 16 15 14 18 18 C 1.50709 * 109.50338 * 177.55401 * 16 15 14 19 19 H 1.07997 * 120.00169 * 245.66216 * 18 16 15 20 20 C 1.37877 * 119.99822 * 65.66558 * 18 16 15 21 21 N 1.31515 * 120.00001 * 5.94902 * 20 18 16 22 22 Si 1.86790 * 120.00094 * 185.95040 * 20 18 16 23 23 H 1.48503 * 109.47295 * 94.80194 * 22 20 18 24 24 H 1.48499 * 109.47443 * 214.80391 * 22 20 18 25 25 H 1.48506 * 109.47130 * 334.80533 * 22 20 18 26 26 C 1.46846 * 111.00038 * 69.17357 * 12 9 7 27 27 H 1.08997 * 109.47225 * 60.00641 * 1 2 3 28 28 H 1.09000 * 109.46915 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47157 * 299.99917 * 1 2 3 30 30 H 1.08995 * 109.47732 * 240.00056 * 2 1 3 31 31 H 1.09007 * 109.47274 * 119.99299 * 2 1 3 32 32 H 0.97009 * 119.99621 * 0.02562 * 3 2 1 33 33 H 0.97009 * 119.99680 * 0.02562 * 6 4 3 34 34 H 1.08997 * 109.46967 * 299.99706 * 11 9 7 35 35 H 1.08993 * 109.47206 * 60.00236 * 11 9 7 36 36 H 1.08998 * 109.46716 * 180.02562 * 11 9 7 37 37 H 1.09003 * 109.46386 * 54.14445 * 13 12 9 38 38 H 1.09002 * 109.45588 * 294.17000 * 13 12 9 39 39 H 1.09003 * 109.50350 * 179.12219 * 14 13 12 40 40 H 1.09004 * 109.50250 * 299.19835 * 14 13 12 41 41 H 1.09001 * 109.52052 * 62.26500 * 15 14 13 42 42 H 1.08994 * 109.52400 * 182.46432 * 15 14 13 43 43 H 0.96996 * 120.00017 * 180.02562 * 21 20 18 44 44 H 1.08994 * 109.46473 * 305.85434 * 26 12 9 45 45 H 1.09003 * 109.46337 * 65.82032 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 3.3434 1.6276 0.0005 5 8 4.1332 0.7039 0.0015 6 7 3.7926 2.8983 0.0000 7 6 5.1176 3.1446 0.0010 8 8 5.9054 2.2232 0.0020 9 6 5.6199 4.5655 -0.0001 10 1 5.1213 5.1277 0.7894 11 6 5.3192 5.2116 -1.3541 12 7 7.0700 4.5724 0.2346 13 6 7.5448 5.9245 0.5550 14 6 9.0263 5.8698 0.9345 15 6 9.8276 5.2910 -0.2348 16 6 9.2809 3.9031 -0.5804 17 1 9.4127 3.2373 0.2725 18 6 10.0247 3.3510 -1.7693 19 1 9.5061 3.1879 -2.7025 20 6 11.3671 3.0542 -1.6655 21 7 11.9716 3.1412 -0.5008 22 14 12.3271 2.5285 -3.1791 23 1 12.9938 3.7124 -3.7784 24 1 13.3523 1.5264 -2.7917 25 1 11.3985 1.9286 -4.1707 26 6 7.7920 4.0148 -0.9161 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 1.8934 -0.5137 0.8901 32 1 1.3879 2.1186 0.0004 33 1 3.1621 3.6356 -0.0004 34 1 5.8178 4.6493 -2.1436 35 1 4.2433 5.2065 -1.5282 36 1 5.6829 6.2391 -1.3550 37 1 6.9700 6.3227 1.3912 38 1 7.4162 6.5699 -0.3141 39 1 9.3823 6.8757 1.1571 40 1 9.1539 5.2361 1.8122 41 1 9.7321 5.9456 -1.1012 42 1 10.8772 5.2097 0.0477 43 1 12.9161 2.9327 -0.4278 44 1 7.3968 3.0259 -1.1484 45 1 7.6622 4.6692 -1.7782 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000397861987.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:52:27 Heat of formation + Delta-G solvation = -91.687475 kcal Electronic energy + Delta-G solvation = -25069.901231 eV Core-core repulsion = 21507.294624 eV Total energy + Delta-G solvation = -3562.606607 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.31749 -40.48984 -38.96977 -36.36019 -35.96377 -35.63484 -34.04804 -31.66178 -31.43206 -30.34664 -26.95592 -26.58709 -24.96181 -23.59950 -23.13429 -22.28138 -21.42759 -20.20614 -19.71823 -18.43958 -18.10277 -17.25162 -16.90762 -16.59516 -16.30407 -15.96714 -15.72427 -15.51843 -15.26967 -14.97464 -14.80869 -14.55956 -14.30566 -13.93894 -13.40936 -13.33238 -13.25454 -13.02199 -12.81291 -12.74287 -12.68121 -12.54384 -12.41863 -12.37904 -11.93764 -11.85787 -11.61057 -11.36425 -11.21778 -10.97696 -10.73080 -10.43064 -10.36535 -10.16454 -9.06712 -8.12440 -6.23023 1.08406 1.30247 1.35877 1.37782 1.48634 2.24321 2.40918 2.85007 3.15770 3.17001 3.70081 3.99969 4.08598 4.11496 4.23194 4.29010 4.32327 4.42604 4.53242 4.62279 4.68997 4.72172 4.85752 4.88095 4.90626 5.01341 5.07869 5.09849 5.12723 5.24306 5.26919 5.31338 5.37537 5.43032 5.46144 5.59841 5.62131 5.94067 6.13245 6.17829 6.33549 6.46593 6.65689 6.90710 7.20925 7.38005 7.43469 8.96150 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.018189 B = 0.003716 C = 0.003272 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1539.026572 B = 7532.298868 C = 8555.239993 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.123 3.877 3 N -0.715 5.715 4 C 0.684 3.316 5 O -0.597 6.597 6 N -0.669 5.669 7 C 0.514 3.486 8 O -0.506 6.506 9 C 0.072 3.928 10 H 0.155 0.845 11 C -0.177 4.177 12 N -0.545 5.545 13 C 0.069 3.931 14 C -0.113 4.113 15 C -0.098 4.098 16 C 0.053 3.947 17 H -0.017 1.017 18 C -0.536 4.536 19 H 0.045 0.955 20 C 0.012 3.988 21 N -0.919 5.919 22 Si 0.954 3.046 23 H -0.267 1.267 24 H -0.283 1.283 25 H -0.272 1.272 26 C 0.085 3.915 27 H 0.075 0.925 28 H 0.084 0.916 29 H 0.076 0.924 30 H 0.051 0.949 31 H 0.052 0.948 32 H 0.420 0.580 33 H 0.434 0.566 34 H 0.037 0.963 35 H 0.104 0.896 36 H 0.088 0.912 37 H 0.104 0.896 38 H 0.047 0.953 39 H 0.081 0.919 40 H 0.041 0.959 41 H 0.035 0.965 42 H 0.038 0.962 43 H 0.260 0.740 44 H 0.044 0.956 45 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.912 7.676 1.764 29.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.001 4.001 3 N -0.374 5.374 4 C 0.384 3.616 5 O -0.473 6.473 6 N -0.338 5.338 7 C 0.300 3.700 8 O -0.375 6.375 9 C -0.040 4.040 10 H 0.172 0.828 11 C -0.235 4.235 12 N -0.269 5.269 13 C -0.058 4.058 14 C -0.150 4.150 15 C -0.136 4.136 16 C 0.034 3.966 17 H 0.002 0.998 18 C -0.575 4.575 19 H 0.063 0.937 20 C -0.187 4.187 21 N -0.558 5.558 22 Si 0.780 3.220 23 H -0.192 1.192 24 H -0.209 1.209 25 H -0.197 1.197 26 C -0.042 4.042 27 H 0.094 0.906 28 H 0.103 0.897 29 H 0.095 0.905 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.259 0.741 33 H 0.274 0.726 34 H 0.056 0.944 35 H 0.123 0.877 36 H 0.107 0.893 37 H 0.123 0.877 38 H 0.065 0.935 39 H 0.099 0.901 40 H 0.060 0.940 41 H 0.054 0.946 42 H 0.057 0.943 43 H 0.069 0.931 44 H 0.062 0.938 45 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -26.453 5.944 2.260 27.207 hybrid contribution 0.567 0.127 -1.334 1.455 sum -25.886 6.071 0.926 26.605 Atomic orbital electron populations 1.21943 0.90699 1.04413 1.03773 1.21350 0.96600 0.80856 1.01278 1.45141 1.03462 1.10714 1.78104 1.16551 0.83965 0.83099 0.77942 1.91077 1.56459 1.44635 1.55099 1.43888 1.09206 1.08601 1.72095 1.21628 0.81060 0.92942 0.74332 1.90873 1.55656 1.48023 1.42946 1.21816 0.90361 0.90155 1.01620 0.82795 1.22392 1.04458 1.01847 0.94832 1.61718 1.02039 1.23318 1.39845 1.22121 0.95491 0.87317 1.00882 1.21602 0.95296 1.00363 0.97788 1.21399 0.99327 0.96634 0.96262 1.18555 0.90440 0.93287 0.94336 0.99830 1.21514 0.95062 1.43005 0.97914 0.93679 1.25762 0.98848 0.95427 0.98656 1.70107 1.10870 1.50058 1.24760 0.85604 0.78337 0.78290 0.79812 1.19246 1.20890 1.19676 1.21974 0.94914 0.97415 0.89940 0.90619 0.89743 0.90538 0.93090 0.92966 0.74148 0.72573 0.94429 0.87706 0.89337 0.87738 0.93495 0.90079 0.93964 0.94593 0.94337 0.93077 0.93756 0.95517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 10.03 71.98 0.72 -0.21 16 2 C 0.12 1.91 6.39 86.38 0.55 2.46 16 3 N -0.71 -11.03 5.56 -478.59 -2.66 -13.69 16 4 C 0.68 18.76 8.50 179.06 1.52 20.29 16 5 O -0.60 -25.44 14.74 18.92 0.28 -25.16 16 6 N -0.67 -14.24 5.24 -440.53 -2.31 -16.55 16 7 C 0.51 16.57 6.86 87.66 0.60 17.17 16 8 O -0.51 -24.57 12.60 19.88 0.25 -24.32 16 9 C 0.07 1.82 2.70 44.17 0.12 1.94 16 10 H 0.15 2.31 7.92 -2.39 -0.02 2.29 16 11 C -0.18 -3.46 8.37 71.98 0.60 -2.86 16 12 N -0.54 -19.99 4.36 -875.51 -3.82 -23.81 16 13 C 0.07 2.06 5.19 86.32 0.45 2.50 16 14 C -0.11 -4.27 6.09 30.65 0.19 -4.08 16 15 C -0.10 -4.84 5.09 30.68 0.16 -4.69 16 16 C 0.05 2.98 2.13 -11.48 -0.02 2.95 16 17 H -0.02 -1.11 8.11 -2.38 -0.02 -1.13 16 18 C -0.54 -32.91 8.49 25.60 0.22 -32.69 16 19 H 0.04 2.74 7.76 -2.91 -0.02 2.72 16 20 C 0.01 0.70 5.27 84.65 0.45 1.15 16 21 N -0.92 -58.05 12.03 21.45 0.26 -57.80 16 22 Si 0.95 47.31 29.54 68.60 2.03 49.34 16 23 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 24 H -0.28 -13.77 7.11 99.48 0.71 -13.07 16 25 H -0.27 -13.26 7.11 99.48 0.71 -12.55 16 26 C 0.08 4.00 3.49 86.33 0.30 4.30 16 27 H 0.07 0.31 8.14 -2.39 -0.02 0.29 16 28 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.08 0.30 8.14 -2.38 -0.02 0.28 16 30 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 32 H 0.42 2.34 8.49 -92.70 -0.79 1.56 16 33 H 0.43 3.42 8.71 -92.70 -0.81 2.62 16 34 H 0.04 1.02 6.44 -2.39 -0.02 1.01 16 35 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.09 1.51 6.95 -2.39 -0.02 1.49 16 37 H 0.10 2.28 7.98 -2.39 -0.02 2.26 16 38 H 0.05 1.26 7.00 -2.39 -0.02 1.25 16 39 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 40 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.04 1.69 8.14 -2.39 -0.02 1.68 16 42 H 0.04 2.15 6.85 -2.39 -0.02 2.13 16 43 H 0.26 15.51 8.31 -92.71 -0.77 14.74 16 44 H 0.04 2.39 5.77 -2.39 -0.01 2.38 16 45 H 0.03 1.19 6.57 -2.39 -0.02 1.17 16 Total: -1.00 -96.04 354.12 -0.71 -96.76 By element: Atomic # 1 Polarization: 7.58 SS G_CDS: -0.59 Total: 6.98 kcal Atomic # 6 Polarization: 2.38 SS G_CDS: 5.85 Total: 8.24 kcal Atomic # 7 Polarization: -103.31 SS G_CDS: -8.53 Total: -111.84 kcal Atomic # 8 Polarization: -50.01 SS G_CDS: 0.53 Total: -49.48 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 2.03 Total: 49.34 kcal Total: -96.04 -0.71 -96.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000397861987.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.071 kcal (2) G-P(sol) polarization free energy of solvation -96.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -96.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds