Wall clock time and date at job start Tue Mar 31 2020 03:24:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34773 * 120.00367 * 2 1 4 4 O 1.21535 * 119.99926 * 359.97438 * 3 2 1 5 5 N 1.34781 * 119.99910 * 180.02562 * 3 2 1 6 6 C 1.34783 * 119.99488 * 180.02562 * 5 3 2 7 7 O 1.21228 * 120.00153 * 359.97438 * 6 5 3 8 8 C 1.50697 * 119.99501 * 179.97438 * 6 5 3 9 9 H 1.09000 * 109.47421 * 59.99962 * 8 6 5 10 10 C 1.53004 * 109.47348 * 299.99854 * 8 6 5 11 11 N 1.46901 * 109.46966 * 179.97438 * 8 6 5 12 12 C 1.46854 * 111.00034 * 189.99984 * 11 8 6 13 13 C 1.53029 * 109.52283 * 174.15832 * 12 11 8 14 14 C 1.53126 * 109.27795 * 59.18140 * 13 12 11 15 15 C 1.52998 * 109.52128 * 182.44116 * 14 13 12 16 16 C 1.50699 * 109.47169 * 184.99691 * 15 14 13 17 17 H 1.08001 * 119.99784 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00130 * 179.97438 * 16 15 14 19 19 N 1.31508 * 120.00030 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99765 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47318 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46970 * 120.00094 * 20 18 16 23 23 H 1.48507 * 109.47011 * 239.99892 * 20 18 16 24 24 C 1.53124 * 109.15878 * 302.34185 * 14 13 12 25 25 C 1.46843 * 111.00022 * 65.79105 * 11 8 6 26 26 H 1.08999 * 109.46546 * 299.99984 * 1 2 3 27 27 H 1.09005 * 109.47022 * 59.99824 * 1 2 3 28 28 H 1.08994 * 109.47588 * 180.02562 * 1 2 3 29 29 H 0.97001 * 119.99680 * 180.02562 * 2 1 3 30 30 H 0.96996 * 120.00158 * 359.97438 * 5 3 2 31 31 H 1.09000 * 109.46948 * 300.00398 * 10 8 6 32 32 H 1.08994 * 109.47144 * 59.99822 * 10 8 6 33 33 H 1.09001 * 109.47370 * 180.02562 * 10 8 6 34 34 H 1.08999 * 109.45788 * 54.14266 * 12 11 8 35 35 H 1.09003 * 109.45264 * 294.17148 * 12 11 8 36 36 H 1.08994 * 109.50822 * 299.23828 * 13 12 11 37 37 H 1.09001 * 109.50199 * 179.11868 * 13 12 11 38 38 H 1.08998 * 109.52297 * 62.25132 * 14 13 12 39 39 H 1.09000 * 109.47277 * 304.99549 * 15 14 13 40 40 H 1.09002 * 109.47758 * 64.99432 * 15 14 13 41 41 H 0.97000 * 120.00018 * 180.02562 * 19 18 16 42 42 H 1.08997 * 109.50088 * 177.59509 * 24 14 13 43 43 H 1.09004 * 109.50324 * 297.71684 * 24 14 13 44 44 H 1.09001 * 109.45906 * 305.85080 * 25 11 8 45 45 H 1.08997 * 109.46476 * 65.82626 * 25 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5313 2.2197 -0.0005 5 7 3.4867 1.1670 -0.0005 6 6 4.1606 2.3343 0.0000 7 8 3.5545 3.3842 0.0005 8 6 5.6676 2.3342 0.0000 9 1 6.0310 1.8207 -0.8902 10 6 6.1776 1.6123 1.2490 11 7 6.1573 3.7191 0.0000 12 6 7.6057 3.7652 -0.2381 13 6 8.0552 5.2214 -0.3763 14 6 7.7054 5.9823 0.9057 15 6 8.0973 7.4531 0.7504 16 6 7.8666 8.1747 2.0531 17 1 7.4796 7.6378 2.9066 18 6 8.1506 9.5200 2.1557 19 7 8.6223 10.1736 1.1166 20 14 7.8653 10.4142 3.7708 21 1 7.3339 9.4606 4.7775 22 1 9.1492 10.9812 4.2562 23 1 6.8867 11.5117 3.5628 24 6 6.1985 5.8781 1.1566 25 6 5.8028 4.4027 1.2503 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.9499 -0.8401 -0.0004 30 1 3.9717 0.3270 -0.0005 31 1 5.8143 2.1258 2.1391 32 1 5.8142 0.5848 1.2485 33 1 7.2676 1.6127 1.2492 34 1 7.8404 3.2241 -1.1547 35 1 8.1263 3.3024 0.6003 36 1 7.5452 5.6810 -1.2228 37 1 9.1327 5.2560 -0.5373 38 1 8.2457 5.5473 1.7465 39 1 9.1506 7.5217 0.4786 40 1 7.4900 7.9105 -0.0308 41 1 8.8224 11.1199 1.1889 42 1 5.9494 6.3817 2.0906 43 1 5.6592 6.3479 0.3340 44 1 4.7281 4.3247 1.4147 45 1 6.3320 3.9369 2.0816 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000399278447.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:31 Heat of formation + Delta-G solvation = -63.688738 kcal Electronic energy + Delta-G solvation = -24776.710429 eV Core-core repulsion = 21215.317939 eV Total energy + Delta-G solvation = -3561.392491 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.41575 -39.49494 -37.89662 -35.13975 -34.77953 -34.60452 -32.51974 -30.45289 -30.20086 -27.48892 -27.22259 -25.19303 -23.61016 -22.69554 -21.81137 -20.73297 -20.24513 -19.26387 -18.66204 -17.23743 -16.34983 -16.17088 -15.87247 -15.57909 -15.06611 -14.78682 -14.47988 -14.32298 -14.25091 -13.99591 -13.39976 -13.24355 -12.87819 -12.66662 -12.56557 -12.35360 -12.26591 -11.86506 -11.67277 -11.55389 -11.06772 -10.99123 -10.72213 -10.57274 -10.45656 -10.28150 -10.16215 -9.91206 -9.63704 -9.54061 -9.38653 -8.92181 -8.79834 -8.25659 -8.07966 -5.90523 -3.91366 2.00521 2.08407 3.10122 3.37021 3.44512 3.48528 3.56540 4.02094 4.35804 4.53959 4.73995 4.75422 4.81530 5.14489 5.20322 5.29797 5.39085 5.39808 5.45082 5.52879 5.58564 5.77658 5.81826 5.86318 5.93276 5.95343 6.09364 6.21443 6.22834 6.36875 6.50457 6.66067 6.74760 7.05440 7.15497 7.22989 7.30896 7.33860 7.41138 7.78270 7.95659 7.96703 8.10915 8.14380 8.54243 9.15396 9.71803 11.20971 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.023664 B = 0.003063 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.930753 B = 9139.320224 C = 9828.018958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.104 3.896 2 N -0.746 5.746 3 C 0.690 3.310 4 O -0.527 6.527 5 N -0.694 5.694 6 C 0.517 3.483 7 O -0.436 6.436 8 C 0.068 3.932 9 H 0.110 0.890 10 C -0.187 4.187 11 N -0.514 5.514 12 C 0.060 3.940 13 C -0.112 4.112 14 C -0.081 4.081 15 C 0.028 3.972 16 C -0.511 4.511 17 H 0.055 0.945 18 C 0.055 3.945 19 N -0.896 5.896 20 Si 0.888 3.112 21 H -0.273 1.273 22 H -0.286 1.286 23 H -0.285 1.285 24 C -0.097 4.097 25 C 0.048 3.952 26 H 0.061 0.939 27 H 0.061 0.939 28 H 0.078 0.922 29 H 0.398 0.602 30 H 0.406 0.594 31 H 0.069 0.931 32 H 0.062 0.938 33 H 0.075 0.925 34 H 0.066 0.934 35 H 0.033 0.967 36 H 0.067 0.933 37 H 0.062 0.938 38 H 0.050 0.950 39 H 0.014 0.986 40 H 0.017 0.983 41 H 0.258 0.742 42 H 0.072 0.928 43 H 0.064 0.936 44 H 0.081 0.919 45 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.694 -28.162 -2.989 29.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.403 5.403 3 C 0.390 3.610 4 O -0.398 6.398 5 N -0.361 5.361 6 C 0.301 3.699 7 O -0.300 6.300 8 C -0.045 4.045 9 H 0.128 0.872 10 C -0.246 4.246 11 N -0.239 5.239 12 C -0.067 4.067 13 C -0.149 4.149 14 C -0.100 4.100 15 C -0.009 4.009 16 C -0.550 4.550 17 H 0.073 0.927 18 C -0.146 4.146 19 N -0.536 5.536 20 Si 0.716 3.284 21 H -0.198 1.198 22 H -0.212 1.212 23 H -0.211 1.211 24 C -0.135 4.135 25 C -0.079 4.079 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.097 0.903 29 H 0.232 0.768 30 H 0.241 0.759 31 H 0.088 0.912 32 H 0.081 0.919 33 H 0.094 0.906 34 H 0.085 0.915 35 H 0.051 0.949 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.069 0.931 39 H 0.032 0.968 40 H 0.035 0.965 41 H 0.068 0.932 42 H 0.090 0.910 43 H 0.083 0.917 44 H 0.099 0.901 45 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -9.834 -26.010 -3.428 28.017 hybrid contribution 0.763 -0.890 1.495 1.900 sum -9.071 -26.900 -1.933 28.454 Atomic orbital electron populations 1.21472 0.77572 1.02269 1.02764 1.45055 1.08144 1.06877 1.80227 1.16205 0.81436 0.84868 0.78477 1.91101 1.66948 1.29720 1.52037 1.44266 1.06677 1.11662 1.73498 1.20893 0.90188 0.82638 0.76151 1.90848 1.69382 1.29985 1.39785 1.21631 0.90091 0.92712 1.00018 0.87196 1.22465 1.03050 1.00327 0.98722 1.61884 1.14445 1.10381 1.37166 1.22164 0.85989 0.98986 0.99553 1.21690 0.99958 0.93060 1.00234 1.21249 0.94917 0.98969 0.94870 1.19118 0.96353 0.88466 0.97002 1.21297 1.42314 0.93947 0.97428 0.92682 1.25018 0.95524 0.97794 0.96230 1.69974 1.45180 1.09069 1.29415 0.86603 0.77709 0.79849 0.84243 1.19808 1.21185 1.21085 1.21511 0.96688 0.92539 1.02723 1.22415 1.01080 0.96242 0.88155 0.92033 0.92016 0.90329 0.76836 0.75936 0.91182 0.91925 0.90610 0.91521 0.94908 0.91457 0.91982 0.93119 0.96812 0.96459 0.93210 0.90969 0.91688 0.90097 0.95394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.59 10.70 59.85 0.64 1.24 16 2 N -0.75 -4.80 5.72 -72.08 -0.41 -5.21 16 3 C 0.69 7.92 8.50 -86.92 -0.74 7.18 16 4 O -0.53 -9.28 14.74 -18.47 -0.27 -9.55 16 5 N -0.69 -6.23 5.13 -15.78 -0.08 -6.31 16 6 C 0.52 6.76 6.77 -10.98 -0.07 6.69 16 7 O -0.44 -8.28 12.72 -18.20 -0.23 -8.51 16 8 C 0.07 0.73 2.73 -68.86 -0.19 0.55 16 9 H 0.11 0.89 7.99 -51.93 -0.41 0.47 16 10 C -0.19 -1.53 8.35 37.16 0.31 -1.22 16 11 N -0.51 -7.68 4.34 -228.08 -0.99 -8.67 16 12 C 0.06 0.84 5.13 -3.83 -0.02 0.82 16 13 C -0.11 -1.95 5.38 -26.65 -0.14 -2.09 16 14 C -0.08 -1.71 2.20 -90.49 -0.20 -1.91 16 15 C 0.03 0.73 4.45 -27.88 -0.12 0.60 16 16 C -0.51 -14.69 8.44 -34.44 -0.29 -14.98 16 17 H 0.05 1.54 7.08 -52.49 -0.37 1.17 16 18 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 19 N -0.90 -27.65 13.29 55.43 0.74 -26.91 16 20 Si 0.89 22.30 29.54 -169.99 -5.02 17.28 16 21 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 22 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 23 H -0.28 -7.12 7.11 56.52 0.40 -6.72 16 24 C -0.10 -1.99 5.15 -26.65 -0.14 -2.13 16 25 C 0.05 0.82 4.36 -3.83 -0.02 0.80 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.40 0.94 8.84 -40.82 -0.36 0.58 16 30 H 0.41 1.54 8.13 -40.82 -0.33 1.21 16 31 H 0.07 0.71 6.46 -51.93 -0.34 0.37 16 32 H 0.06 0.30 7.56 -51.93 -0.39 -0.09 16 33 H 0.07 0.61 6.81 -51.93 -0.35 0.26 16 34 H 0.07 0.77 8.01 -51.93 -0.42 0.36 16 35 H 0.03 0.43 6.87 -51.93 -0.36 0.07 16 36 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 41 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 42 H 0.07 1.58 7.05 -51.93 -0.37 1.21 16 43 H 0.06 1.45 8.14 -51.93 -0.42 1.02 16 44 H 0.08 1.49 5.78 -51.93 -0.30 1.19 16 45 H 0.03 0.44 6.58 -51.93 -0.34 0.10 16 LS Contribution 353.20 15.07 5.32 5.32 Total: -1.00 -38.94 353.20 -9.31 -48.26 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: -7.28 Total: -2.74 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: -1.08 Total: -2.94 kcal Atomic # 7 Polarization: -46.36 SS G_CDS: -0.75 Total: -47.11 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: -0.50 Total: -18.07 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -38.94 -9.31 -48.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399278447.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.434 kcal (2) G-P(sol) polarization free energy of solvation -38.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds