Wall clock time and date at job start Tue Mar 31 2020 03:24:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34773 * 120.00367 * 2 1 4 4 O 1.21535 * 119.99926 * 359.97438 * 3 2 1 5 5 N 1.34781 * 119.99910 * 180.02562 * 3 2 1 6 6 C 1.34783 * 119.99488 * 180.02562 * 5 3 2 7 7 O 1.21228 * 120.00153 * 359.97438 * 6 5 3 8 8 C 1.50697 * 119.99501 * 179.97438 * 6 5 3 9 9 H 1.09000 * 109.47421 * 59.99962 * 8 6 5 10 10 C 1.53004 * 109.47348 * 299.99854 * 8 6 5 11 11 N 1.46901 * 109.46966 * 179.97438 * 8 6 5 12 12 C 1.46854 * 111.00034 * 189.99984 * 11 8 6 13 13 C 1.53029 * 109.52283 * 174.15832 * 12 11 8 14 14 C 1.53126 * 109.27795 * 59.18140 * 13 12 11 15 15 C 1.52998 * 109.52128 * 182.44116 * 14 13 12 16 16 C 1.50699 * 109.47169 * 184.99691 * 15 14 13 17 17 H 1.08001 * 119.99784 * 0.02562 * 16 15 14 18 18 C 1.37876 * 120.00130 * 179.97438 * 16 15 14 19 19 N 1.31508 * 120.00030 * 0.02562 * 18 16 15 20 20 Si 1.86803 * 119.99765 * 180.02562 * 18 16 15 21 21 H 1.48495 * 109.47318 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.46970 * 120.00094 * 20 18 16 23 23 H 1.48507 * 109.47011 * 239.99892 * 20 18 16 24 24 C 1.53124 * 109.15878 * 302.34185 * 14 13 12 25 25 C 1.46843 * 111.00022 * 65.79105 * 11 8 6 26 26 H 1.08999 * 109.46546 * 299.99984 * 1 2 3 27 27 H 1.09005 * 109.47022 * 59.99824 * 1 2 3 28 28 H 1.08994 * 109.47588 * 180.02562 * 1 2 3 29 29 H 0.97001 * 119.99680 * 180.02562 * 2 1 3 30 30 H 0.96996 * 120.00158 * 359.97438 * 5 3 2 31 31 H 1.09000 * 109.46948 * 300.00398 * 10 8 6 32 32 H 1.08994 * 109.47144 * 59.99822 * 10 8 6 33 33 H 1.09001 * 109.47370 * 180.02562 * 10 8 6 34 34 H 1.08999 * 109.45788 * 54.14266 * 12 11 8 35 35 H 1.09003 * 109.45264 * 294.17148 * 12 11 8 36 36 H 1.08994 * 109.50822 * 299.23828 * 13 12 11 37 37 H 1.09001 * 109.50199 * 179.11868 * 13 12 11 38 38 H 1.08998 * 109.52297 * 62.25132 * 14 13 12 39 39 H 1.09000 * 109.47277 * 304.99549 * 15 14 13 40 40 H 1.09002 * 109.47758 * 64.99432 * 15 14 13 41 41 H 0.97000 * 120.00018 * 180.02562 * 19 18 16 42 42 H 1.08997 * 109.50088 * 177.59509 * 24 14 13 43 43 H 1.09004 * 109.50324 * 297.71684 * 24 14 13 44 44 H 1.09001 * 109.45906 * 305.85080 * 25 11 8 45 45 H 1.08997 * 109.46476 * 65.82626 * 25 11 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1671 0.0000 4 8 1.5313 2.2197 -0.0005 5 7 3.4867 1.1670 -0.0005 6 6 4.1606 2.3343 0.0000 7 8 3.5545 3.3842 0.0005 8 6 5.6676 2.3342 0.0000 9 1 6.0310 1.8207 -0.8902 10 6 6.1776 1.6123 1.2490 11 7 6.1573 3.7191 0.0000 12 6 7.6057 3.7652 -0.2381 13 6 8.0552 5.2214 -0.3763 14 6 7.7054 5.9823 0.9057 15 6 8.0973 7.4531 0.7504 16 6 7.8666 8.1747 2.0531 17 1 7.4796 7.6378 2.9066 18 6 8.1506 9.5200 2.1557 19 7 8.6223 10.1736 1.1166 20 14 7.8653 10.4142 3.7708 21 1 7.3339 9.4606 4.7775 22 1 9.1492 10.9812 4.2562 23 1 6.8867 11.5117 3.5628 24 6 6.1985 5.8781 1.1566 25 6 5.8028 4.4027 1.2503 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 1.9499 -0.8401 -0.0004 30 1 3.9717 0.3270 -0.0005 31 1 5.8143 2.1258 2.1391 32 1 5.8142 0.5848 1.2485 33 1 7.2676 1.6127 1.2492 34 1 7.8404 3.2241 -1.1547 35 1 8.1263 3.3024 0.6003 36 1 7.5452 5.6810 -1.2228 37 1 9.1327 5.2560 -0.5373 38 1 8.2457 5.5473 1.7465 39 1 9.1506 7.5217 0.4786 40 1 7.4900 7.9105 -0.0308 41 1 8.8224 11.1199 1.1889 42 1 5.9494 6.3817 2.0906 43 1 5.6592 6.3479 0.3340 44 1 4.7281 4.3247 1.4147 45 1 6.3320 3.9369 2.0816 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000399278447.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:24:30 Heat of formation + Delta-G solvation = -94.664145 kcal Electronic energy + Delta-G solvation = -24778.053623 eV Core-core repulsion = 21215.317939 eV Total energy + Delta-G solvation = -3562.735685 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.34923 -40.58786 -39.09304 -36.50298 -35.87076 -35.45836 -34.49457 -31.82274 -31.57089 -29.00039 -28.03738 -26.34347 -25.16565 -24.10677 -22.98085 -21.95937 -21.39294 -20.30113 -19.94575 -18.46078 -18.12369 -17.25048 -16.96427 -16.52250 -16.44743 -15.95415 -15.66452 -15.44709 -15.36227 -15.09987 -14.97650 -14.44750 -14.13352 -13.99688 -13.64561 -13.52466 -13.28350 -13.07747 -13.05399 -12.88235 -12.74523 -12.46164 -12.37495 -12.19414 -12.05004 -11.78197 -11.64305 -11.30651 -11.20320 -10.99160 -10.71399 -10.57623 -10.46109 -10.19204 -9.16789 -8.18222 -6.27471 1.04558 1.32080 1.36663 1.38188 1.50761 2.22553 2.40598 2.81257 3.06582 3.14771 3.65761 3.92301 4.02186 4.07046 4.17188 4.21980 4.40963 4.42855 4.49876 4.62801 4.67498 4.70150 4.76582 4.82469 4.86645 4.92310 5.00370 5.10931 5.13700 5.16308 5.23613 5.31558 5.40425 5.44199 5.45076 5.54135 5.58246 5.81541 5.89513 6.10652 6.21457 6.30304 6.62762 6.88853 7.16101 7.36913 7.40554 8.94021 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.023664 B = 0.003063 C = 0.002848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1182.930753 B = 9139.320224 C = 9828.018958 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.720 5.720 3 C 0.683 3.317 4 O -0.596 6.596 5 N -0.670 5.670 6 C 0.517 3.483 7 O -0.506 6.506 8 C 0.073 3.927 9 H 0.152 0.848 10 C -0.181 4.181 11 N -0.540 5.540 12 C 0.069 3.931 13 C -0.109 4.109 14 C -0.072 4.072 15 C 0.033 3.967 16 C -0.528 4.528 17 H 0.058 0.942 18 C -0.004 4.004 19 N -0.935 5.935 20 Si 0.960 3.040 21 H -0.263 1.263 22 H -0.275 1.275 23 H -0.282 1.282 24 C -0.092 4.092 25 C 0.067 3.933 26 H 0.045 0.955 27 H 0.045 0.955 28 H 0.124 0.876 29 H 0.423 0.577 30 H 0.434 0.566 31 H 0.047 0.953 32 H 0.104 0.896 33 H 0.087 0.913 34 H 0.103 0.897 35 H 0.053 0.947 36 H 0.046 0.954 37 H 0.072 0.928 38 H 0.056 0.944 39 H -0.008 1.008 40 H -0.019 1.019 41 H 0.262 0.738 42 H 0.048 0.952 43 H 0.033 0.967 44 H 0.063 0.937 45 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.992 -32.390 -2.235 33.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.378 5.378 3 C 0.383 3.617 4 O -0.472 6.472 5 N -0.339 5.339 6 C 0.303 3.697 7 O -0.375 6.375 8 C -0.039 4.039 9 H 0.169 0.831 10 C -0.240 4.240 11 N -0.265 5.265 12 C -0.057 4.057 13 C -0.147 4.147 14 C -0.090 4.090 15 C -0.004 4.004 16 C -0.566 4.566 17 H 0.076 0.924 18 C -0.201 4.201 19 N -0.576 5.576 20 Si 0.785 3.215 21 H -0.187 1.187 22 H -0.201 1.201 23 H -0.208 1.208 24 C -0.130 4.130 25 C -0.061 4.061 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.143 0.857 29 H 0.261 0.739 30 H 0.274 0.726 31 H 0.066 0.934 32 H 0.123 0.877 33 H 0.106 0.894 34 H 0.121 0.879 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.090 0.910 38 H 0.074 0.926 39 H 0.010 0.990 40 H -0.001 1.001 41 H 0.071 0.929 42 H 0.067 0.933 43 H 0.052 0.948 44 H 0.081 0.919 45 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -9.099 -30.386 -2.674 31.832 hybrid contribution 0.497 0.363 1.197 1.346 sum -8.602 -30.023 -1.477 31.266 Atomic orbital electron populations 1.21642 0.76916 1.04738 1.01267 1.44902 1.08508 1.06388 1.77974 1.16573 0.82020 0.85152 0.77959 1.91070 1.68376 1.32594 1.55127 1.43902 1.05993 1.12027 1.71994 1.21512 0.91323 0.82510 0.74337 1.90841 1.70807 1.32673 1.43150 1.21816 0.88067 0.90682 1.03302 0.83112 1.22457 1.03683 1.01995 0.95865 1.61680 1.15356 1.13515 1.35921 1.22116 0.85292 0.96151 1.02165 1.21623 1.00494 0.95511 0.97100 1.21079 0.94970 0.95744 0.97234 1.19017 0.94204 0.92116 0.95080 1.21686 1.42038 0.94633 0.98273 0.92375 1.25970 0.95178 0.98828 1.00148 1.70110 1.46203 1.09538 1.31791 0.85466 0.77936 0.78437 0.79637 1.18670 1.20050 1.20785 1.21371 0.96144 0.95382 1.00130 1.22043 1.00088 0.93760 0.90202 0.93648 0.93567 0.85741 0.73931 0.72597 0.93402 0.87720 0.89394 0.87879 0.92859 0.93486 0.90987 0.92552 0.98994 1.00088 0.92947 0.93337 0.94820 0.91901 0.93656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.97 10.70 127.77 1.37 2.33 16 2 N -0.72 -7.49 5.72 -500.25 -2.86 -10.35 16 3 C 0.68 14.98 8.50 179.05 1.52 16.50 16 4 O -0.60 -21.78 14.74 18.94 0.28 -21.50 16 5 N -0.67 -10.40 5.13 -440.53 -2.26 -12.66 16 6 C 0.52 12.82 6.77 87.66 0.59 13.42 16 7 O -0.51 -19.90 12.72 19.89 0.25 -19.64 16 8 C 0.07 1.32 2.73 44.17 0.12 1.44 16 9 H 0.15 1.55 7.99 -2.39 -0.02 1.53 16 10 C -0.18 -2.12 8.35 71.98 0.60 -1.52 16 11 N -0.54 -15.22 4.34 -875.51 -3.80 -19.02 16 12 C 0.07 1.71 5.13 86.32 0.44 2.15 16 13 C -0.11 -3.78 5.38 30.65 0.16 -3.62 16 14 C -0.07 -3.09 2.20 -10.71 -0.02 -3.12 16 15 C 0.03 1.83 4.45 29.85 0.13 1.96 16 16 C -0.53 -31.41 8.44 25.60 0.22 -31.20 16 17 H 0.06 3.34 7.08 -2.91 -0.02 3.32 16 18 C 0.00 -0.26 5.46 84.66 0.46 0.21 16 19 N -0.94 -59.59 13.29 21.45 0.28 -59.30 16 20 Si 0.96 46.60 29.54 68.60 2.03 48.63 16 21 H -0.26 -12.18 7.11 99.48 0.71 -11.48 16 22 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 23 H -0.28 -13.49 7.11 99.48 0.71 -12.78 16 24 C -0.09 -3.99 5.15 30.65 0.16 -3.83 16 25 C 0.07 2.28 4.36 86.33 0.38 2.66 16 26 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.05 0.62 8.14 -2.38 -0.02 0.60 16 28 H 0.12 0.08 8.14 -2.39 -0.02 0.06 16 29 H 0.42 0.25 8.84 -92.71 -0.82 -0.57 16 30 H 0.43 1.31 8.13 -92.71 -0.75 0.55 16 31 H 0.05 0.81 6.46 -2.39 -0.02 0.80 16 32 H 0.10 0.35 7.56 -2.39 -0.02 0.33 16 33 H 0.09 0.90 6.81 -2.39 -0.02 0.89 16 34 H 0.10 1.87 8.01 -2.39 -0.02 1.85 16 35 H 0.05 1.13 6.87 -2.39 -0.02 1.12 16 36 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 37 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 39 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 40 H -0.02 -1.20 8.14 -2.39 -0.02 -1.22 16 41 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 42 H 0.05 2.25 7.05 -2.39 -0.02 2.24 16 43 H 0.03 1.62 8.14 -2.38 -0.02 1.60 16 44 H 0.06 2.42 5.78 -2.39 -0.01 2.41 16 45 H 0.05 1.38 6.58 -2.39 -0.02 1.36 16 Total: -1.00 -94.10 353.20 -0.52 -94.61 By element: Atomic # 1 Polarization: 2.44 SS G_CDS: -0.57 Total: 1.87 kcal Atomic # 6 Polarization: -8.76 SS G_CDS: 6.13 Total: -2.63 kcal Atomic # 7 Polarization: -92.70 SS G_CDS: -8.64 Total: -101.34 kcal Atomic # 8 Polarization: -41.68 SS G_CDS: 0.53 Total: -41.15 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Total: -94.10 -0.52 -94.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000399278447.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.052 kcal (2) G-P(sol) polarization free energy of solvation -94.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds