Wall clock time and date at job start Tue Mar 31 2020 03:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47600 * 2 1 4 4 C 1.50703 * 109.47396 * 239.99647 * 2 1 3 5 5 O 1.21279 * 119.99562 * 245.35234 * 4 2 1 6 6 N 1.34773 * 119.99784 * 65.34922 * 4 2 1 7 7 C 1.47582 * 134.49123 * 185.01315 * 6 4 2 8 8 C 1.53946 * 86.11858 * 155.35722 * 7 6 4 9 9 O 1.42903 * 113.74185 * 269.15773 * 8 7 6 10 10 C 1.50698 * 113.74340 * 137.95000 * 8 7 6 11 11 H 1.08002 * 119.99776 * 16.99722 * 10 8 7 12 12 C 1.37872 * 120.00361 * 196.99067 * 10 8 7 13 13 N 1.31508 * 120.00496 * 193.88696 * 12 10 8 14 14 Si 1.86801 * 119.99634 * 13.88488 * 12 10 8 15 15 H 1.48508 * 109.47047 * 179.97438 * 14 12 10 16 16 H 1.48496 * 109.47188 * 299.99854 * 14 12 10 17 17 H 1.48498 * 109.47305 * 60.00220 * 14 12 10 18 18 C 1.47808 * 134.45890 * 4.87709 * 6 4 2 19 19 N 1.46903 * 109.47148 * 119.99831 * 2 1 3 20 20 C 1.46959 * 110.99970 * 58.79665 * 19 2 1 21 21 C 1.53052 * 109.36496 * 176.81416 * 20 19 2 22 22 N 1.46957 * 109.36420 * 58.40218 * 21 20 19 23 23 C 1.46899 * 111.00123 * 176.81158 * 22 21 20 24 24 C 1.46959 * 110.87952 * 300.67928 * 22 21 20 25 25 C 1.46957 * 110.99823 * 294.99974 * 19 2 1 26 26 H 1.08996 * 109.47007 * 180.10092 * 1 2 3 27 27 H 1.09005 * 109.46990 * 300.10636 * 1 2 3 28 28 H 1.09006 * 109.46740 * 60.10161 * 1 2 3 29 29 H 1.09007 * 113.77120 * 41.05657 * 7 6 4 30 30 H 1.08994 * 113.87025 * 269.67297 * 7 6 4 31 31 H 0.96701 * 113.99919 * 174.43353 * 9 8 7 32 32 H 0.97004 * 119.99571 * 354.90640 * 13 12 10 33 33 H 1.09006 * 113.76932 * 90.37991 * 18 6 4 34 34 H 1.09001 * 113.83815 * 318.91860 * 18 6 4 35 35 H 1.08997 * 109.48757 * 296.78105 * 20 19 2 36 36 H 1.09000 * 109.48762 * 56.84892 * 20 19 2 37 37 H 1.09001 * 109.49088 * 298.43805 * 21 20 19 38 38 H 1.08998 * 109.48783 * 178.36596 * 21 20 19 39 39 H 1.09003 * 109.47150 * 183.79746 * 23 22 21 40 40 H 1.08997 * 109.47143 * 303.79810 * 23 22 21 41 41 H 1.09003 * 109.47009 * 63.80334 * 23 22 21 42 42 H 1.09001 * 109.49129 * 299.35113 * 24 22 21 43 43 H 1.08998 * 109.50649 * 179.29767 * 24 22 21 44 44 H 1.09000 * 109.48991 * 303.15511 * 25 19 2 45 45 H 1.09006 * 109.49112 * 63.19679 * 25 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.6475 -1.7500 -1.1216 6 7 1.7981 -0.1906 -2.4516 7 6 2.0484 -0.6433 -3.8338 8 6 0.8840 0.2800 -4.2358 9 8 -0.3903 -0.3668 -4.2336 10 6 1.1410 1.0677 -5.4945 11 1 1.9304 0.7675 -6.1677 12 6 0.3683 2.1715 -5.7870 13 7 0.3991 2.6950 -6.9929 14 14 -0.7225 2.9233 -4.4700 15 1 -1.4451 4.0919 -5.0336 16 1 -1.7042 1.9116 -4.0034 17 1 0.1152 3.3647 -3.3260 18 6 1.1848 1.0609 -2.9436 19 7 2.0197 -0.6925 1.1995 20 6 1.5251 -2.0755 1.2480 21 6 2.1200 -2.7848 2.4668 22 7 1.7489 -2.0528 3.6858 23 6 2.2385 -2.7452 4.8853 24 6 2.2435 -0.6698 3.6373 25 6 1.6486 0.0395 2.4185 26 1 -0.3633 -1.0276 0.0018 27 1 -0.3633 0.5155 0.8891 28 1 -0.3633 0.5123 -0.8910 29 1 1.8445 -1.7023 -3.9930 30 1 3.0139 -0.3316 -4.2319 31 1 -1.1336 0.2282 -4.4023 32 1 1.0194 2.3515 -7.6550 33 1 1.8964 1.8756 -3.0782 34 1 0.2927 1.3603 -2.3935 35 1 0.4379 -2.0704 1.3250 36 1 1.8232 -2.6003 0.3403 37 1 3.2059 -2.8139 2.3765 38 1 1.7318 -3.8019 2.5210 39 1 1.8928 -2.2190 5.7751 40 1 1.8576 -3.7664 4.8962 41 1 3.3283 -2.7638 4.8747 42 1 3.3308 -0.6748 3.5603 43 1 1.9457 -0.1447 4.5449 44 1 2.0367 1.0567 2.3643 45 1 0.5626 0.0690 2.5087 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408159286.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:03 Heat of formation + Delta-G solvation = -13.194898 kcal Electronic energy + Delta-G solvation = -25651.635398 eV Core-core repulsion = 22092.432485 eV Total energy + Delta-G solvation = -3559.202913 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.34795 -39.18948 -37.61351 -35.62184 -34.26690 -32.65995 -31.38537 -30.96784 -28.67445 -27.47791 -25.84479 -25.22447 -24.24868 -23.72874 -22.53040 -20.09080 -19.46297 -18.52589 -18.00163 -16.71786 -16.38411 -15.84945 -15.34656 -15.24502 -15.13252 -14.93305 -14.77798 -14.32452 -13.97423 -13.61523 -13.53971 -13.38984 -12.79112 -12.68432 -12.58467 -12.40548 -12.19227 -11.99212 -11.84590 -11.76199 -11.58553 -11.18574 -11.10747 -10.88396 -10.79299 -10.70416 -10.46289 -9.99192 -9.50221 -9.24530 -9.03243 -8.55930 -8.50134 -8.25497 -7.97660 -6.76212 -4.50126 3.01741 3.03631 3.12266 3.15434 3.34404 3.77890 3.96021 4.14112 4.63652 4.74167 4.82742 4.89237 5.05428 5.09326 5.14179 5.19827 5.21761 5.24562 5.39336 5.41282 5.43072 5.49636 5.60420 5.62121 5.68166 5.72230 5.82528 5.89754 5.98819 6.00040 6.14584 6.21078 6.24100 6.29611 6.41212 6.68204 6.79099 6.82958 7.04673 7.12272 7.51944 8.05181 8.26430 8.53935 8.61425 8.67135 9.25636 10.60069 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.032539 B = 0.003797 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.287621 B = 7371.740912 C = 7799.075438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.071 3.929 3 H 0.103 0.897 4 C 0.539 3.461 5 O -0.543 6.543 6 N -0.631 5.631 7 C 0.131 3.869 8 C 0.200 3.800 9 O -0.566 6.566 10 C -0.617 4.617 11 H 0.070 0.930 12 C 0.035 3.965 13 N -0.887 5.887 14 Si 1.040 2.960 15 H -0.278 1.278 16 H -0.279 1.279 17 H -0.273 1.273 18 C 0.055 3.945 19 N -0.517 5.517 20 C 0.039 3.961 21 C 0.061 3.939 22 N -0.548 5.548 23 C 0.026 3.974 24 C 0.059 3.941 25 C 0.053 3.947 26 H 0.065 0.935 27 H 0.066 0.934 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.366 0.634 32 H 0.274 0.726 33 H 0.095 0.905 34 H 0.066 0.934 35 H 0.038 0.962 36 H 0.115 0.885 37 H 0.042 0.958 38 H 0.076 0.924 39 H 0.066 0.934 40 H 0.067 0.933 41 H 0.025 0.975 42 H 0.042 0.958 43 H 0.077 0.923 44 H 0.078 0.922 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.480 -3.556 19.174 19.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.041 4.041 3 H 0.120 0.880 4 C 0.328 3.672 5 O -0.422 6.422 6 N -0.365 5.365 7 C 0.009 3.991 8 C 0.159 3.841 9 O -0.374 6.374 10 C -0.654 4.654 11 H 0.088 0.912 12 C -0.173 4.173 13 N -0.519 5.519 14 Si 0.867 3.133 15 H -0.203 1.203 16 H -0.206 1.206 17 H -0.199 1.199 18 C -0.068 4.068 19 N -0.242 5.242 20 C -0.089 4.089 21 C -0.067 4.067 22 N -0.273 5.273 23 C -0.123 4.123 24 C -0.069 4.069 25 C -0.075 4.075 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.108 0.892 31 H 0.216 0.784 32 H 0.085 0.915 33 H 0.113 0.887 34 H 0.084 0.916 35 H 0.056 0.944 36 H 0.133 0.867 37 H 0.061 0.939 38 H 0.095 0.905 39 H 0.085 0.915 40 H 0.085 0.915 41 H 0.043 0.957 42 H 0.060 0.940 43 H 0.096 0.904 44 H 0.097 0.903 45 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.103 -3.527 19.804 20.116 hybrid contribution 0.890 -0.501 -0.337 1.076 sum 0.994 -4.029 19.467 19.904 Atomic orbital electron populations 1.22409 0.95203 1.03372 1.03219 1.21507 0.94422 0.98753 0.89413 0.87953 1.19918 0.79044 0.85325 0.82928 1.90536 1.41585 1.24636 1.85442 1.50127 1.59536 1.22215 1.04633 1.23195 0.98600 0.99946 0.77333 1.20399 0.82378 0.89565 0.91761 1.86378 1.16249 1.40284 1.94488 1.22200 1.22461 1.13485 1.07303 0.91189 1.25827 0.97677 0.94502 0.99282 1.70802 1.33651 1.44900 1.02585 0.84155 0.76446 0.77379 0.75275 1.20343 1.20642 1.19859 1.24763 0.97068 0.88619 0.96305 1.62101 1.59159 1.02502 1.00411 1.22629 0.97279 0.89089 0.99855 1.22162 0.98902 0.96985 0.88672 1.62204 1.59732 1.02569 1.02764 1.22331 0.97756 0.99360 0.92812 1.22130 0.97948 0.89111 0.97701 1.22209 0.98999 0.97224 0.89046 0.91601 0.91548 0.90857 0.90925 0.89163 0.78406 0.91517 0.88708 0.91582 0.94363 0.86705 0.93942 0.90532 0.91538 0.91451 0.95683 0.94004 0.90443 0.90343 0.93575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.51 8.41 37.16 0.31 -2.20 16 2 C 0.07 1.07 2.53 -68.86 -0.17 0.89 16 3 H 0.10 1.43 8.11 -51.93 -0.42 1.01 16 4 C 0.54 10.18 7.12 -10.99 -0.08 10.10 16 5 O -0.54 -11.58 14.43 5.56 0.08 -11.50 16 6 N -0.63 -12.32 3.58 -178.09 -0.64 -12.96 16 7 C 0.13 2.72 8.23 -2.97 -0.02 2.70 16 8 C 0.20 4.41 1.07 -90.85 -0.10 4.31 16 9 O -0.57 -12.64 13.47 -35.23 -0.47 -13.11 16 10 C -0.62 -15.60 9.04 -34.44 -0.31 -15.91 16 11 H 0.07 1.92 8.06 -52.49 -0.42 1.49 16 12 C 0.04 0.90 5.44 -17.82 -0.10 0.80 16 13 N -0.89 -24.73 13.70 55.43 0.76 -23.97 16 14 Si 1.04 21.47 24.59 -169.99 -4.18 17.29 16 15 H -0.28 -5.94 7.11 56.52 0.40 -5.53 16 16 H -0.28 -5.18 5.78 56.52 0.33 -4.85 16 17 H -0.27 -5.08 6.48 56.52 0.37 -4.72 16 18 C 0.06 1.07 5.10 -2.84 -0.01 1.05 16 19 N -0.52 -7.45 4.52 -227.87 -1.03 -8.48 16 20 C 0.04 0.57 4.70 -3.76 -0.02 0.55 16 21 C 0.06 0.76 5.62 -3.77 -0.02 0.74 16 22 N -0.55 -6.18 4.97 -242.75 -1.21 -7.39 16 23 C 0.03 0.23 9.60 60.06 0.58 0.80 16 24 C 0.06 0.63 5.62 -3.76 -0.02 0.61 16 25 C 0.05 0.61 5.25 -3.77 -0.02 0.59 16 26 H 0.07 0.95 6.45 -51.93 -0.33 0.62 16 27 H 0.07 0.77 6.60 -51.93 -0.34 0.43 16 28 H 0.07 1.06 5.88 -51.93 -0.31 0.75 16 29 H 0.07 1.52 8.14 -51.93 -0.42 1.10 16 30 H 0.09 1.80 8.09 -51.93 -0.42 1.38 16 31 H 0.37 7.58 5.99 45.56 0.27 7.85 16 32 H 0.27 7.66 8.73 -40.82 -0.36 7.30 16 33 H 0.09 1.80 8.01 -51.93 -0.42 1.38 16 34 H 0.07 1.17 4.96 -51.93 -0.26 0.91 16 35 H 0.04 0.55 6.46 -51.93 -0.34 0.22 16 36 H 0.12 1.99 5.21 -51.93 -0.27 1.72 16 37 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.08 0.86 8.13 -51.93 -0.42 0.44 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.54 8.13 -51.93 -0.42 0.12 16 41 H 0.02 0.22 8.14 -51.93 -0.42 -0.21 16 42 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.08 0.80 8.12 -51.93 -0.42 0.38 16 45 H 0.05 0.53 6.60 -51.93 -0.34 0.19 16 LS Contribution 338.74 15.07 5.10 5.10 Total: -1.00 -29.22 338.74 -8.23 -37.45 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: -6.66 Total: 12.52 kcal Atomic # 6 Polarization: 5.04 SS G_CDS: 0.01 Total: 5.05 kcal Atomic # 7 Polarization: -50.69 SS G_CDS: -2.12 Total: -52.81 kcal Atomic # 8 Polarization: -24.21 SS G_CDS: -0.39 Total: -24.61 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.18 Total: 17.29 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.22 -8.23 -37.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408159286.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.255 kcal (2) G-P(sol) polarization free energy of solvation -29.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.450 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds