Wall clock time and date at job start Tue Mar 31 2020 03:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47600 * 2 1 4 4 C 1.50703 * 109.47396 * 239.99647 * 2 1 3 5 5 O 1.21279 * 119.99562 * 245.35234 * 4 2 1 6 6 N 1.34773 * 119.99784 * 65.34922 * 4 2 1 7 7 C 1.47582 * 134.49123 * 185.01315 * 6 4 2 8 8 C 1.53946 * 86.11858 * 155.35722 * 7 6 4 9 9 O 1.42903 * 113.74185 * 269.15773 * 8 7 6 10 10 C 1.50698 * 113.74340 * 137.95000 * 8 7 6 11 11 H 1.08002 * 119.99776 * 16.99722 * 10 8 7 12 12 C 1.37872 * 120.00361 * 196.99067 * 10 8 7 13 13 N 1.31508 * 120.00496 * 193.88696 * 12 10 8 14 14 Si 1.86801 * 119.99634 * 13.88488 * 12 10 8 15 15 H 1.48508 * 109.47047 * 179.97438 * 14 12 10 16 16 H 1.48496 * 109.47188 * 299.99854 * 14 12 10 17 17 H 1.48498 * 109.47305 * 60.00220 * 14 12 10 18 18 C 1.47808 * 134.45890 * 4.87709 * 6 4 2 19 19 N 1.46903 * 109.47148 * 119.99831 * 2 1 3 20 20 C 1.46959 * 110.99970 * 58.79665 * 19 2 1 21 21 C 1.53052 * 109.36496 * 176.81416 * 20 19 2 22 22 N 1.46957 * 109.36420 * 58.40218 * 21 20 19 23 23 C 1.46899 * 111.00123 * 176.81158 * 22 21 20 24 24 C 1.46959 * 110.87952 * 300.67928 * 22 21 20 25 25 C 1.46957 * 110.99823 * 294.99974 * 19 2 1 26 26 H 1.08996 * 109.47007 * 180.10092 * 1 2 3 27 27 H 1.09005 * 109.46990 * 300.10636 * 1 2 3 28 28 H 1.09006 * 109.46740 * 60.10161 * 1 2 3 29 29 H 1.09007 * 113.77120 * 41.05657 * 7 6 4 30 30 H 1.08994 * 113.87025 * 269.67297 * 7 6 4 31 31 H 0.96701 * 113.99919 * 174.43353 * 9 8 7 32 32 H 0.97004 * 119.99571 * 354.90640 * 13 12 10 33 33 H 1.09006 * 113.76932 * 90.37991 * 18 6 4 34 34 H 1.09001 * 113.83815 * 318.91860 * 18 6 4 35 35 H 1.08997 * 109.48757 * 296.78105 * 20 19 2 36 36 H 1.09000 * 109.48762 * 56.84892 * 20 19 2 37 37 H 1.09001 * 109.49088 * 298.43805 * 21 20 19 38 38 H 1.08998 * 109.48783 * 178.36596 * 21 20 19 39 39 H 1.09003 * 109.47150 * 183.79746 * 23 22 21 40 40 H 1.08997 * 109.47143 * 303.79810 * 23 22 21 41 41 H 1.09003 * 109.47009 * 63.80334 * 23 22 21 42 42 H 1.09001 * 109.49129 * 299.35113 * 24 22 21 43 43 H 1.08998 * 109.50649 * 179.29767 * 24 22 21 44 44 H 1.09000 * 109.48991 * 303.15511 * 25 19 2 45 45 H 1.09006 * 109.49112 * 63.19679 * 25 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.6475 -1.7500 -1.1216 6 7 1.7981 -0.1906 -2.4516 7 6 2.0484 -0.6433 -3.8338 8 6 0.8840 0.2800 -4.2358 9 8 -0.3903 -0.3668 -4.2336 10 6 1.1410 1.0677 -5.4945 11 1 1.9304 0.7675 -6.1677 12 6 0.3683 2.1715 -5.7870 13 7 0.3991 2.6950 -6.9929 14 14 -0.7225 2.9233 -4.4700 15 1 -1.4451 4.0919 -5.0336 16 1 -1.7042 1.9116 -4.0034 17 1 0.1152 3.3647 -3.3260 18 6 1.1848 1.0609 -2.9436 19 7 2.0197 -0.6925 1.1995 20 6 1.5251 -2.0755 1.2480 21 6 2.1200 -2.7848 2.4668 22 7 1.7489 -2.0528 3.6858 23 6 2.2385 -2.7452 4.8853 24 6 2.2435 -0.6698 3.6373 25 6 1.6486 0.0395 2.4185 26 1 -0.3633 -1.0276 0.0018 27 1 -0.3633 0.5155 0.8891 28 1 -0.3633 0.5123 -0.8910 29 1 1.8445 -1.7023 -3.9930 30 1 3.0139 -0.3316 -4.2319 31 1 -1.1336 0.2282 -4.4023 32 1 1.0194 2.3515 -7.6550 33 1 1.8964 1.8756 -3.0782 34 1 0.2927 1.3603 -2.3935 35 1 0.4379 -2.0704 1.3250 36 1 1.8232 -2.6003 0.3403 37 1 3.2059 -2.8139 2.3765 38 1 1.7318 -3.8019 2.5210 39 1 1.8928 -2.2190 5.7751 40 1 1.8576 -3.7664 4.8962 41 1 3.3283 -2.7638 4.8747 42 1 3.3308 -0.6748 3.5603 43 1 1.9457 -0.1447 4.5449 44 1 2.0367 1.0567 2.3643 45 1 0.5626 0.0690 2.5087 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408159286.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:16:03 Heat of formation + Delta-G solvation = -38.816990 kcal Electronic energy + Delta-G solvation = -25652.746456 eV Core-core repulsion = 22092.432485 eV Total energy + Delta-G solvation = -3560.313971 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.72630 -40.47181 -39.00509 -36.70880 -35.99036 -34.63830 -32.50484 -31.90931 -30.23985 -28.42815 -27.44356 -26.88552 -25.37496 -24.68247 -23.64362 -21.70037 -20.55817 -20.01504 -19.87800 -18.11683 -17.68972 -17.27763 -16.80692 -16.55771 -16.18180 -15.98507 -15.74911 -15.67315 -15.25720 -15.11028 -14.84697 -14.72346 -14.38648 -14.01303 -13.82008 -13.62907 -13.52033 -13.22130 -12.96883 -12.79580 -12.58900 -12.56621 -12.39870 -12.14881 -12.08215 -11.85467 -11.72245 -11.70498 -11.27184 -10.92767 -10.68071 -10.27109 -9.67974 -9.43228 -9.22801 -8.81559 -6.58494 1.42531 1.51753 1.57096 1.63550 1.80719 2.45092 2.83352 2.92176 2.98088 3.23116 3.55168 3.76308 3.81482 3.99644 4.05543 4.09739 4.20888 4.26216 4.27234 4.33555 4.36635 4.54815 4.57952 4.60074 4.60688 4.66263 4.67554 4.72758 4.83250 4.86587 4.92617 4.96840 5.00090 5.01490 5.09960 5.18950 5.63281 5.83701 5.91753 5.92966 6.12265 6.14040 6.40747 6.75384 6.96429 7.12857 7.28597 8.53118 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.032539 B = 0.003797 C = 0.003589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 860.287621 B = 7371.740912 C = 7799.075438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.077 3.923 3 H 0.122 0.878 4 C 0.532 3.468 5 O -0.573 6.573 6 N -0.631 5.631 7 C 0.124 3.876 8 C 0.194 3.806 9 O -0.572 6.572 10 C -0.623 4.623 11 H 0.029 0.971 12 C -0.009 4.009 13 N -0.922 5.922 14 Si 1.069 2.931 15 H -0.290 1.290 16 H -0.243 1.243 17 H -0.232 1.232 18 C 0.069 3.931 19 N -0.532 5.532 20 C 0.045 3.955 21 C 0.067 3.933 22 N -0.554 5.554 23 C 0.026 3.974 24 C 0.059 3.941 25 C 0.053 3.947 26 H 0.052 0.948 27 H 0.094 0.906 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.091 0.909 31 H 0.374 0.626 32 H 0.257 0.743 33 H 0.101 0.899 34 H 0.095 0.905 35 H 0.039 0.961 36 H 0.082 0.918 37 H 0.026 0.974 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.072 0.928 41 H 0.023 0.977 42 H 0.032 0.968 43 H 0.102 0.898 44 H 0.096 0.904 45 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.842 -2.451 22.990 23.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.034 4.034 3 H 0.140 0.860 4 C 0.323 3.677 5 O -0.454 6.454 6 N -0.365 5.365 7 C 0.002 3.998 8 C 0.152 3.848 9 O -0.381 6.381 10 C -0.660 4.660 11 H 0.048 0.952 12 C -0.210 4.210 13 N -0.556 5.556 14 Si 0.888 3.112 15 H -0.216 1.216 16 H -0.167 1.167 17 H -0.155 1.155 18 C -0.053 4.053 19 N -0.257 5.257 20 C -0.083 4.083 21 C -0.062 4.062 22 N -0.279 5.279 23 C -0.122 4.122 24 C -0.069 4.069 25 C -0.074 4.074 26 H 0.071 0.929 27 H 0.112 0.888 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.109 0.891 31 H 0.225 0.775 32 H 0.066 0.934 33 H 0.119 0.881 34 H 0.113 0.887 35 H 0.057 0.943 36 H 0.100 0.900 37 H 0.045 0.955 38 H 0.103 0.897 39 H 0.102 0.898 40 H 0.091 0.909 41 H 0.042 0.958 42 H 0.050 0.950 43 H 0.120 0.880 44 H 0.114 0.886 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.199 -2.447 23.644 23.801 hybrid contribution 1.385 -0.955 -1.591 2.315 sum 0.185 -3.402 22.053 22.314 Atomic orbital electron populations 1.22362 0.93742 1.02940 1.04400 1.21513 0.95373 0.98878 0.87676 0.86022 1.20763 0.78321 0.85034 0.83578 1.90540 1.42870 1.26077 1.85886 1.50097 1.59807 1.22240 1.04341 1.23135 0.98423 0.99302 0.78974 1.20326 0.82571 0.90118 0.91742 1.86364 1.16470 1.40777 1.94491 1.22304 1.21378 1.14091 1.08271 0.95236 1.27393 0.98856 0.94590 1.00170 1.70956 1.34694 1.46190 1.03748 0.83902 0.76139 0.77181 0.73986 1.21597 1.16740 1.15502 1.24595 0.98202 0.88206 0.94285 1.62092 1.59702 1.02580 1.01314 1.22431 0.97237 0.89404 0.99219 1.22047 0.97726 0.97479 0.88901 1.62238 1.59927 1.03006 1.02757 1.22396 0.97739 0.99784 0.92300 1.22205 0.97330 0.88920 0.98435 1.22336 0.99511 0.97789 0.87774 0.92891 0.88760 0.91121 0.91879 0.89129 0.77543 0.93408 0.88057 0.88713 0.94297 0.90031 0.95537 0.89708 0.89847 0.90885 0.95793 0.94998 0.87953 0.88558 0.92955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.15 8.41 71.98 0.61 -3.55 16 2 C 0.08 2.10 2.53 44.17 0.11 2.22 16 3 H 0.12 2.88 8.11 -2.39 -0.02 2.86 16 4 C 0.53 19.41 7.12 87.66 0.62 20.03 16 5 O -0.57 -24.52 14.43 -3.03 -0.04 -24.57 16 6 N -0.63 -23.72 3.58 -839.57 -3.01 -26.73 16 7 C 0.12 5.20 8.23 86.49 0.71 5.92 16 8 C 0.19 8.37 1.07 -10.88 -0.01 8.36 16 9 O -0.57 -24.66 13.47 -148.98 -2.01 -26.66 16 10 C -0.62 -32.08 9.04 25.60 0.23 -31.85 16 11 H 0.03 1.70 8.06 -2.91 -0.02 1.68 16 12 C -0.01 -0.49 5.44 84.65 0.46 -0.03 16 13 N -0.92 -52.85 13.70 21.44 0.29 -52.56 16 14 Si 1.07 40.49 24.59 68.60 1.69 42.18 16 15 H -0.29 -11.61 7.11 99.48 0.71 -10.90 16 16 H -0.24 -7.74 5.78 99.48 0.58 -7.17 16 17 H -0.23 -7.28 6.48 99.48 0.64 -6.63 16 18 C 0.07 2.47 5.10 86.44 0.44 2.91 16 19 N -0.53 -14.10 4.52 -874.84 -3.96 -18.06 16 20 C 0.04 1.26 4.70 86.31 0.41 1.66 16 21 C 0.07 1.60 5.62 86.31 0.49 2.08 16 22 N -0.55 -11.08 4.97 -921.92 -4.58 -15.66 16 23 C 0.03 0.38 9.60 127.69 1.23 1.61 16 24 C 0.06 1.07 5.62 86.31 0.49 1.55 16 25 C 0.05 1.03 5.25 86.31 0.45 1.48 16 26 H 0.05 1.39 6.45 -2.39 -0.02 1.38 16 27 H 0.09 1.72 6.60 -2.38 -0.02 1.70 16 28 H 0.07 1.71 5.88 -2.38 -0.01 1.70 16 29 H 0.06 2.71 8.14 -2.38 -0.02 2.70 16 30 H 0.09 3.72 8.09 -2.39 -0.02 3.70 16 31 H 0.37 14.51 5.99 -74.06 -0.44 14.06 16 32 H 0.26 15.11 8.73 -92.71 -0.81 14.30 16 33 H 0.10 3.52 8.01 -2.38 -0.02 3.50 16 34 H 0.09 2.87 4.96 -2.39 -0.01 2.86 16 35 H 0.04 1.06 6.46 -2.39 -0.02 1.05 16 36 H 0.08 2.85 5.21 -2.39 -0.01 2.84 16 37 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.08 1.83 8.13 -2.39 -0.02 1.81 16 39 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.07 1.00 8.13 -2.39 -0.02 0.98 16 41 H 0.02 0.36 8.14 -2.39 -0.02 0.34 16 42 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 43 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 44 H 0.10 1.53 8.12 -2.39 -0.02 1.51 16 45 H 0.05 0.97 6.60 -2.38 -0.02 0.95 16 Total: -1.00 -65.78 338.74 -5.07 -70.85 By element: Atomic # 1 Polarization: 38.51 SS G_CDS: 0.32 Total: 38.83 kcal Atomic # 6 Polarization: 6.16 SS G_CDS: 6.23 Total: 12.39 kcal Atomic # 7 Polarization: -101.76 SS G_CDS: -11.25 Total: -113.02 kcal Atomic # 8 Polarization: -49.18 SS G_CDS: -2.05 Total: -51.23 kcal Atomic # 14 Polarization: 40.49 SS G_CDS: 1.69 Total: 42.18 kcal Total: -65.78 -5.07 -70.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408159286.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.029 kcal (2) G-P(sol) polarization free energy of solvation -65.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds