Wall clock time and date at job start Tue Mar 31 2020 03:30:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46504 * 109.46883 * 2 1 4 4 C 1.46701 * 119.81120 * 269.72111 * 3 2 1 5 5 C 1.53574 * 108.77327 * 108.76454 * 4 3 2 6 6 C 1.52453 * 110.10344 * 88.81301 * 5 4 3 7 7 N 1.46068 * 111.51276 * 297.25381 * 6 5 4 8 8 C 1.34777 * 119.81527 * 242.91465 * 7 6 5 9 9 O 1.21280 * 119.99609 * 0.02562 * 8 7 6 10 10 C 1.50696 * 120.00072 * 180.02562 * 8 7 6 11 11 H 1.08996 * 109.47549 * 319.99788 * 10 8 7 12 12 N 1.46907 * 109.46948 * 200.00208 * 10 8 7 13 13 C 1.52994 * 109.47215 * 80.00462 * 10 8 7 14 14 C 1.53000 * 109.47581 * 184.99858 * 13 10 8 15 15 C 1.50690 * 109.47464 * 179.97438 * 14 13 10 16 16 H 1.07998 * 120.00212 * 359.97438 * 15 14 13 17 17 C 1.37881 * 120.00302 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00459 * 179.97438 * 17 15 14 19 19 Si 1.86803 * 119.99799 * 0.02562 * 17 15 14 20 20 H 1.48496 * 109.47042 * 89.99511 * 19 17 15 21 21 H 1.48499 * 109.46983 * 209.99835 * 19 17 15 22 22 H 1.48505 * 109.46713 * 329.99724 * 19 17 15 23 23 C 1.46672 * 120.37551 * 62.93864 * 7 6 5 24 24 C 1.34241 * 119.81699 * 90.00133 * 3 2 1 25 25 O 1.21283 * 120.34932 * 357.08645 * 24 3 2 26 26 H 1.09001 * 109.46998 * 59.99945 * 1 2 3 27 27 H 1.09000 * 109.47050 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46801 * 300.00349 * 1 2 3 29 29 H 1.09001 * 109.47002 * 119.99497 * 2 1 3 30 30 H 1.08993 * 109.46955 * 239.99934 * 2 1 3 31 31 H 1.09000 * 109.53774 * 228.60370 * 4 3 2 32 32 H 1.08996 * 109.54167 * 348.85596 * 4 3 2 33 33 H 1.08996 * 109.45161 * 328.57864 * 5 4 3 34 34 H 1.09003 * 109.33033 * 208.96605 * 5 4 3 35 35 H 1.08997 * 109.07604 * 176.73435 * 6 5 4 36 36 H 1.09001 * 109.01885 * 57.73870 * 6 5 4 37 37 H 1.00900 * 110.99826 * 176.05208 * 12 10 8 38 38 H 1.00904 * 110.99828 * 300.00033 * 12 10 8 39 39 H 1.09004 * 109.46998 * 304.99908 * 13 10 8 40 40 H 1.09000 * 109.47616 * 64.99248 * 13 10 8 41 41 H 1.09000 * 109.46543 * 299.99835 * 14 13 10 42 42 H 1.09000 * 109.47143 * 59.99101 * 14 13 10 43 43 H 0.97002 * 120.00094 * 180.02562 * 18 17 15 44 44 H 1.08999 * 109.59614 * 158.24938 * 23 7 6 45 45 H 1.08996 * 109.73197 * 37.85284 * 23 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2673 2.0668 -1.2729 5 6 1.1873 3.1397 -1.4759 6 6 1.6293 4.4544 -0.8433 7 7 1.7972 4.3238 0.6018 8 6 1.0196 5.0439 1.4345 9 8 0.1832 5.7974 0.9833 10 6 1.1896 4.9129 2.9261 11 1 1.3618 3.8674 3.1818 12 7 -0.0257 5.3881 3.6010 13 6 2.3858 5.7524 3.3789 14 6 2.6351 5.5223 4.8708 15 6 3.8137 6.3487 5.3165 16 1 4.3333 6.9752 4.6067 17 6 4.2288 6.3052 6.6306 18 7 5.2576 7.0261 7.0196 19 14 3.3305 5.2211 7.8583 20 1 3.9530 3.8730 7.8766 21 1 3.4202 5.8262 9.2115 22 1 1.9040 5.1023 7.4628 23 6 2.8074 3.4139 1.1519 24 6 2.2408 2.0106 1.1647 25 8 1.9900 1.4606 2.2161 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.8933 -0.5138 -0.8899 31 1 3.2505 2.5366 -1.2477 32 1 2.2272 1.3458 -2.0892 33 1 0.2572 2.8106 -1.0126 34 1 1.0236 3.2894 -2.5431 35 1 0.8786 5.2179 -1.0470 36 1 2.5774 4.7604 -1.2857 37 1 0.0377 5.2510 4.5987 38 1 -0.2072 6.3557 3.3799 39 1 3.2703 5.4593 2.8132 40 1 2.1761 6.8077 3.2041 41 1 1.7506 5.8154 5.4363 42 1 2.8448 4.4670 5.0455 43 1 5.5498 6.9951 7.9440 44 1 3.0571 3.7166 2.1688 45 1 3.7035 3.4408 0.5320 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424178449.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:30:06 Heat of formation + Delta-G solvation = -96.467473 kcal Electronic energy + Delta-G solvation = -25692.382806 eV Core-core repulsion = 22129.568923 eV Total energy + Delta-G solvation = -3562.813883 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.00658 -40.51702 -37.93538 -37.15826 -36.61853 -34.85804 -33.27564 -32.14221 -31.98656 -28.86248 -28.59863 -27.05645 -25.28693 -24.13887 -22.96659 -21.90971 -20.79745 -19.89409 -19.25403 -18.74523 -18.19287 -17.59088 -17.10321 -16.44166 -16.23986 -15.99339 -15.83414 -15.57725 -15.08765 -14.82358 -14.73661 -14.63657 -14.57932 -14.46938 -14.02825 -13.67965 -13.53353 -13.44336 -13.10555 -13.08780 -12.79198 -12.72344 -12.39882 -12.14755 -11.98599 -11.88791 -11.82922 -11.73276 -11.42920 -11.19346 -10.82746 -10.78691 -9.87940 -9.77293 -9.68207 -8.31654 -6.36082 1.17825 1.35866 1.36820 1.43045 1.47848 1.98538 2.06909 2.33848 3.03879 3.31812 3.41795 3.63775 3.81126 3.90612 3.93830 4.02225 4.09151 4.13676 4.30775 4.34634 4.37385 4.44131 4.51934 4.53680 4.65742 4.74104 4.76304 4.86313 4.90661 4.92059 4.98581 5.22221 5.28090 5.30986 5.39045 5.42535 5.58545 5.59836 5.89902 6.11974 6.23380 6.30177 6.41524 6.71159 6.98701 7.05590 7.28737 8.84651 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.018334 B = 0.004319 C = 0.003987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.851094 B = 6481.336123 C = 7021.906532 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.105 3.895 3 N -0.603 5.603 4 C 0.103 3.897 5 C -0.148 4.148 6 C 0.097 3.903 7 N -0.598 5.598 8 C 0.529 3.471 9 O -0.557 6.557 10 C 0.074 3.926 11 H 0.099 0.901 12 N -0.831 5.831 13 C -0.117 4.117 14 C -0.007 4.007 15 C -0.530 4.530 16 H 0.035 0.965 17 C 0.010 3.990 18 N -0.948 5.948 19 Si 0.944 3.056 20 H -0.269 1.269 21 H -0.284 1.284 22 H -0.245 1.245 23 C 0.084 3.916 24 C 0.496 3.504 25 O -0.578 6.578 26 H 0.066 0.934 27 H 0.080 0.920 28 H 0.020 0.980 29 H 0.061 0.939 30 H 0.117 0.883 31 H 0.098 0.902 32 H 0.124 0.876 33 H 0.048 0.952 34 H 0.123 0.877 35 H 0.078 0.922 36 H 0.105 0.895 37 H 0.353 0.647 38 H 0.348 0.652 39 H 0.070 0.930 40 H 0.051 0.949 41 H 0.023 0.977 42 H 0.020 0.980 43 H 0.267 0.733 44 H 0.105 0.895 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.377 -14.482 -22.534 27.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.017 4.017 3 N -0.335 5.335 4 C -0.018 4.018 5 C -0.187 4.187 6 C -0.024 4.024 7 N -0.333 5.333 8 C 0.318 3.682 9 O -0.435 6.435 10 C -0.041 4.041 11 H 0.117 0.883 12 N -0.363 5.363 13 C -0.157 4.157 14 C -0.044 4.044 15 C -0.568 4.568 16 H 0.053 0.947 17 C -0.187 4.187 18 N -0.588 5.588 19 Si 0.768 3.232 20 H -0.194 1.194 21 H -0.210 1.210 22 H -0.169 1.169 23 C -0.042 4.042 24 C 0.283 3.717 25 O -0.457 6.457 26 H 0.085 0.915 27 H 0.099 0.901 28 H 0.040 0.960 29 H 0.080 0.920 30 H 0.135 0.865 31 H 0.116 0.884 32 H 0.142 0.858 33 H 0.067 0.933 34 H 0.141 0.859 35 H 0.097 0.903 36 H 0.123 0.877 37 H 0.168 0.832 38 H 0.161 0.839 39 H 0.089 0.911 40 H 0.070 0.930 41 H 0.041 0.959 42 H 0.038 0.962 43 H 0.076 0.924 44 H 0.123 0.877 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -7.245 -14.893 -22.553 27.981 hybrid contribution 0.559 0.651 1.692 1.897 sum -6.687 -14.242 -20.861 26.129 Atomic orbital electron populations 1.22080 0.96117 1.02748 1.01015 1.21637 0.94345 0.81747 1.03927 1.48187 1.64135 1.14725 1.06497 1.22242 0.99162 0.95860 0.84527 1.22410 0.98701 0.94298 1.03330 1.21691 1.04062 0.99201 0.77481 1.47638 1.36197 1.41858 1.07600 1.20716 0.79453 0.78970 0.89100 1.90612 1.35366 1.39116 1.78401 1.21480 0.90819 1.01154 0.90669 0.88315 1.58727 1.35549 1.27258 1.14734 1.22054 0.96898 0.98878 0.97854 1.19489 0.95617 0.96192 0.93109 1.21362 1.14089 1.26165 0.95189 0.94684 1.25926 0.95510 0.96746 1.00549 1.70050 1.27842 1.42775 1.18146 0.85749 0.80703 0.78955 0.77842 1.19389 1.20991 1.16890 1.22224 0.92872 0.85139 1.03993 1.21435 0.77842 0.88759 0.83702 1.90732 1.53080 1.69046 1.32801 0.91486 0.90077 0.96040 0.92047 0.86530 0.88374 0.85804 0.93312 0.85921 0.90310 0.87744 0.83186 0.83890 0.91144 0.92996 0.95904 0.96165 0.92447 0.87672 0.83823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.62 10.24 71.98 0.74 -1.88 16 2 C 0.11 1.58 6.10 86.38 0.53 2.10 16 3 N -0.60 -10.14 2.47 -820.11 -2.02 -12.16 16 4 C 0.10 0.82 5.90 86.53 0.51 1.33 16 5 C -0.15 -1.62 5.94 30.61 0.18 -1.43 16 6 C 0.10 1.60 5.92 86.28 0.51 2.11 16 7 N -0.60 -14.56 2.68 -826.69 -2.22 -16.78 16 8 C 0.53 17.47 6.92 87.66 0.61 18.08 16 9 O -0.56 -21.17 15.54 -3.03 -0.05 -21.22 16 10 C 0.07 2.60 2.35 44.16 0.10 2.70 16 11 H 0.10 3.62 6.81 -2.39 -0.02 3.61 16 12 N -0.83 -28.99 8.94 -171.81 -1.54 -30.53 16 13 C -0.12 -4.56 4.41 30.59 0.14 -4.42 16 14 C -0.01 -0.30 3.81 29.84 0.11 -0.19 16 15 C -0.53 -30.24 9.66 25.60 0.25 -30.00 16 16 H 0.03 2.19 7.99 -2.91 -0.02 2.17 16 17 C 0.01 0.58 5.47 84.66 0.46 1.05 16 18 N -0.95 -59.26 13.96 21.45 0.30 -58.96 16 19 Si 0.94 44.56 27.47 68.60 1.88 46.44 16 20 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 21 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 22 H -0.25 -10.73 6.54 99.48 0.65 -10.08 16 23 C 0.08 1.89 4.95 85.80 0.42 2.31 16 24 C 0.50 12.60 7.23 87.94 0.64 13.24 16 25 O -0.58 -20.34 16.50 -3.04 -0.05 -20.39 16 26 H 0.07 0.91 8.08 -2.39 -0.02 0.89 16 27 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.02 0.51 8.14 -2.39 -0.02 0.49 16 29 H 0.06 1.22 7.46 -2.39 -0.02 1.20 16 30 H 0.12 0.82 7.84 -2.39 -0.02 0.80 16 31 H 0.10 0.47 6.71 -2.39 -0.02 0.45 16 32 H 0.12 0.20 7.75 -2.39 -0.02 0.19 16 33 H 0.05 0.84 7.97 -2.39 -0.02 0.82 16 34 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.08 1.67 6.85 -2.39 -0.02 1.66 16 36 H 0.10 1.09 8.08 -2.39 -0.02 1.07 16 37 H 0.35 11.95 7.55 -89.69 -0.68 11.27 16 38 H 0.35 12.03 8.58 -89.69 -0.77 11.26 16 39 H 0.07 2.60 6.61 -2.39 -0.02 2.59 16 40 H 0.05 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.02 1.03 5.93 -2.39 -0.01 1.01 16 42 H 0.02 0.92 7.57 -2.39 -0.02 0.90 16 43 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 44 H 0.11 2.92 4.65 -2.39 -0.01 2.91 16 45 H 0.14 2.01 7.17 -2.39 -0.02 1.99 16 Total: -1.00 -80.07 351.68 1.02 -79.05 By element: Atomic # 1 Polarization: 30.03 SS G_CDS: -0.49 Total: 29.54 kcal Atomic # 6 Polarization: -0.19 SS G_CDS: 5.20 Total: 5.00 kcal Atomic # 7 Polarization: -112.95 SS G_CDS: -5.47 Total: -118.42 kcal Atomic # 8 Polarization: -41.51 SS G_CDS: -0.10 Total: -41.61 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 1.88 Total: 46.44 kcal Total: -80.07 1.02 -79.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424178449.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.416 kcal (2) G-P(sol) polarization free energy of solvation -80.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds