Wall clock time and date at job start Tue Mar 31 2020 03:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47111 * 2 1 4 4 C 1.46496 * 120.00175 * 269.99771 * 3 2 1 5 5 C 1.34779 * 119.99965 * 90.00102 * 3 2 1 6 6 O 1.21279 * 120.00005 * 359.97438 * 5 3 2 7 7 C 1.50698 * 120.00173 * 179.97438 * 5 3 2 8 8 H 1.09005 * 109.47382 * 59.99720 * 7 5 3 9 9 C 1.52999 * 109.47117 * 300.00230 * 7 5 3 10 10 N 1.46499 * 109.47403 * 179.97438 * 7 5 3 11 11 C 1.34776 * 119.99637 * 205.00231 * 10 7 5 12 12 O 1.21586 * 120.00517 * 359.97438 * 11 10 7 13 13 N 1.34780 * 119.99547 * 180.02562 * 11 10 7 14 14 C 1.46499 * 119.99970 * 179.72180 * 13 11 10 15 15 C 1.53002 * 109.47202 * 178.57941 * 14 13 11 16 16 C 1.50696 * 115.54957 * 65.14504 * 15 14 13 17 17 H 1.08009 * 119.99704 * 265.48505 * 16 15 14 18 18 C 1.37877 * 120.00393 * 85.47889 * 16 15 14 19 19 N 1.31516 * 119.99701 * 353.66132 * 18 16 15 20 20 Si 1.86799 * 120.00327 * 173.65601 * 18 16 15 21 21 H 1.48500 * 109.46942 * 0.02562 * 20 18 16 22 22 H 1.48500 * 109.47030 * 120.00327 * 20 18 16 23 23 H 1.48499 * 109.47000 * 240.00239 * 20 18 16 24 24 C 1.52995 * 117.49787 * 279.47580 * 15 14 13 25 25 C 1.53000 * 117.49831 * 210.81499 * 15 14 13 26 26 H 1.09003 * 109.47041 * 300.00373 * 1 2 3 27 27 H 1.08999 * 109.47199 * 60.00052 * 1 2 3 28 28 H 1.08994 * 109.47217 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46812 * 240.00106 * 2 1 3 30 30 H 1.09001 * 109.46689 * 120.00040 * 2 1 3 31 31 H 1.08994 * 109.47200 * 270.00279 * 4 3 2 32 32 H 1.09007 * 109.47047 * 30.00227 * 4 3 2 33 33 H 1.08996 * 109.47269 * 149.99818 * 4 3 2 34 34 H 1.09001 * 109.47387 * 59.99831 * 9 7 5 35 35 H 1.09001 * 109.47686 * 179.97438 * 9 7 5 36 36 H 1.09006 * 109.47065 * 299.99796 * 9 7 5 37 37 H 0.96994 * 120.00005 * 24.99612 * 10 7 5 38 38 H 0.97003 * 119.99890 * 359.97438 * 13 11 10 39 39 H 1.08998 * 109.47316 * 298.58092 * 14 13 11 40 40 H 1.09004 * 109.47239 * 58.58336 * 14 13 11 41 41 H 0.97000 * 119.99892 * 185.06284 * 19 18 16 42 42 H 1.08998 * 117.50512 * 359.97438 * 24 15 14 43 43 H 1.09003 * 117.50131 * 145.02012 * 24 15 14 44 44 H 1.09005 * 117.49724 * 214.97808 * 25 15 14 45 45 H 1.08997 * 117.50141 * 359.97438 * 25 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0718 -1.2687 5 6 2.2430 2.0165 1.1672 6 8 2.0404 1.4450 2.2175 7 6 2.7459 3.4371 1.1673 8 1 2.0283 4.0767 0.6532 9 6 4.0938 3.5010 0.4463 10 7 2.9080 3.8978 2.5485 11 6 2.8505 5.2144 2.8308 12 8 2.6646 6.0199 1.9392 13 7 3.0002 5.6382 4.1014 14 6 2.9438 7.0698 4.4075 15 6 3.1058 7.2758 5.9150 16 6 4.4422 6.8767 6.4856 17 1 4.5762 5.8924 6.9095 18 6 5.4940 7.7680 6.4664 19 7 5.3699 8.9181 5.8406 20 14 7.0951 7.3422 7.3293 21 1 6.9792 5.9998 7.9534 22 1 8.2032 7.3341 6.3408 23 1 7.3758 8.3542 8.3793 24 6 1.8711 7.0647 6.7935 25 6 2.4002 8.4792 6.5434 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.2919 1.9005 -1.5833 32 1 1.5817 1.6877 -2.0284 33 1 2.0956 3.1410 -1.1384 34 1 3.9728 3.1585 -0.5814 35 1 4.4574 4.5286 0.4458 36 1 4.8115 2.8615 0.9603 37 1 3.0566 3.2553 3.2597 38 1 3.1489 4.9956 4.8127 39 1 3.7473 7.5857 3.8819 40 1 1.9828 7.4723 4.0871 41 1 6.1321 9.5132 5.7639 42 1 0.9433 6.7795 6.2976 43 1 2.0255 6.6376 7.7844 44 1 2.9025 8.9820 7.3698 45 1 1.8210 9.1244 5.8829 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430963690.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:42:41 Heat of formation + Delta-G solvation = -36.845582 kcal Electronic energy + Delta-G solvation = -24543.306232 eV Core-core repulsion = 20983.077748 eV Total energy + Delta-G solvation = -3560.228484 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.58453 -39.12572 -36.78399 -36.16932 -34.87826 -33.24909 -31.98099 -31.84783 -29.76623 -27.23832 -26.15815 -25.20144 -24.68636 -22.67112 -21.15991 -20.20293 -19.59574 -19.34139 -18.10502 -16.94914 -16.62338 -16.12813 -15.82894 -15.12025 -14.93461 -14.62747 -14.35706 -14.17218 -14.00562 -13.74114 -13.43956 -13.18257 -13.07103 -12.69468 -12.61532 -12.44274 -12.30232 -12.01055 -11.68222 -11.55490 -11.49982 -11.34724 -10.99737 -10.88027 -10.49610 -10.23403 -9.91870 -9.73614 -9.49134 -9.04408 -8.93918 -8.86638 -8.46856 -8.22375 -7.94871 -6.04998 -4.13145 2.38138 2.54708 3.26889 3.29328 3.35864 3.38670 3.79008 4.20941 4.37886 4.68394 4.75648 4.83039 4.87754 5.04359 5.05487 5.09223 5.16399 5.23304 5.32074 5.37660 5.41020 5.56621 5.60186 5.76042 5.87966 6.06945 6.14266 6.19046 6.38529 6.50721 6.63201 6.67660 6.74204 6.88946 7.04377 7.12382 7.36283 7.45564 7.50056 7.64139 7.84786 7.88625 8.37880 8.68841 8.87929 9.21112 9.53433 11.02889 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.021789 B = 0.003215 C = 0.003103 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1284.752305 B = 8705.895671 C = 9020.245203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.111 3.889 3 N -0.616 5.616 4 C 0.071 3.929 5 C 0.513 3.487 6 O -0.531 6.531 7 C 0.150 3.850 8 H 0.112 0.888 9 C -0.172 4.172 10 N -0.738 5.738 11 C 0.703 3.297 12 O -0.606 6.606 13 N -0.717 5.717 14 C 0.183 3.817 15 C 0.027 3.973 16 C -0.499 4.499 17 H 0.060 0.940 18 C 0.073 3.927 19 N -0.874 5.874 20 Si 0.890 3.110 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.284 1.284 24 C -0.211 4.211 25 C -0.147 4.147 26 H 0.060 0.940 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.084 0.916 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.078 0.922 36 H 0.060 0.940 37 H 0.403 0.597 38 H 0.397 0.603 39 H 0.070 0.930 40 H 0.035 0.965 41 H 0.261 0.739 42 H 0.065 0.935 43 H 0.078 0.922 44 H 0.083 0.917 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.101 -15.297 -14.058 21.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.011 4.011 3 N -0.351 5.351 4 C -0.072 4.072 5 C 0.300 3.700 6 O -0.407 6.407 7 C 0.040 3.960 8 H 0.129 0.871 9 C -0.230 4.230 10 N -0.397 5.397 11 C 0.403 3.597 12 O -0.485 6.485 13 N -0.369 5.369 14 C 0.059 3.941 15 C 0.027 3.973 16 C -0.536 4.536 17 H 0.078 0.922 18 C -0.131 4.131 19 N -0.511 5.511 20 Si 0.717 3.283 21 H -0.197 1.197 22 H -0.211 1.211 23 H -0.210 1.210 24 C -0.248 4.248 25 C -0.185 4.185 26 H 0.079 0.921 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.102 0.898 31 H 0.083 0.917 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.080 0.920 37 H 0.239 0.761 38 H 0.231 0.769 39 H 0.088 0.912 40 H 0.053 0.947 41 H 0.071 0.929 42 H 0.084 0.916 43 H 0.096 0.904 44 H 0.102 0.898 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -6.299 -14.615 -14.273 21.377 hybrid contribution 1.062 -0.675 0.964 1.585 sum -5.236 -15.290 -13.308 20.936 Atomic orbital electron populations 1.22136 0.95805 1.02256 1.02494 1.21438 0.94503 0.81967 1.03216 1.47804 1.66572 1.14456 1.06236 1.22070 1.01496 0.98345 0.85266 1.20864 0.77013 0.88628 0.83467 1.90692 1.51569 1.67549 1.30911 1.20407 0.99055 0.91568 0.84958 0.87090 1.22424 0.95837 1.04417 1.00357 1.44820 1.79736 1.06820 1.08291 1.15933 0.78181 0.81625 0.83996 1.90853 1.58249 1.53369 1.46078 1.45131 1.75523 1.10255 1.06019 1.20858 0.99119 0.77519 0.96575 1.19046 0.91190 0.98641 0.88472 1.20388 0.93776 0.99663 1.39799 0.92164 1.24984 0.98531 0.94633 0.94906 1.69990 1.30400 1.09755 1.40907 0.86580 0.83587 0.78470 0.79614 1.19729 1.21074 1.20985 1.23022 0.98337 1.01785 1.01639 1.22488 1.03012 0.89920 1.03112 0.92087 0.92563 0.91555 0.90479 0.89750 0.91749 0.90919 0.90197 0.90645 0.90275 0.92043 0.76114 0.76907 0.91163 0.94703 0.92943 0.91624 0.90387 0.89831 0.91655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.25 10.24 37.16 0.38 -0.87 16 2 C 0.11 0.86 6.13 -4.04 -0.02 0.84 16 3 N -0.62 -5.58 2.87 -181.58 -0.52 -6.10 16 4 C 0.07 0.42 8.80 59.84 0.53 0.94 16 5 C 0.51 6.41 7.14 -10.99 -0.08 6.33 16 6 O -0.53 -8.29 15.42 5.56 0.09 -8.21 16 7 C 0.15 1.97 2.18 -69.08 -0.15 1.82 16 8 H 0.11 1.50 6.83 -51.93 -0.35 1.14 16 9 C -0.17 -1.92 9.12 37.16 0.34 -1.58 16 10 N -0.74 -11.74 4.96 -59.81 -0.30 -12.04 16 11 C 0.70 13.87 8.53 -86.92 -0.74 13.12 16 12 O -0.61 -13.70 16.01 5.29 0.08 -13.61 16 13 N -0.72 -14.62 5.48 -65.22 -0.36 -14.98 16 14 C 0.18 4.26 5.50 -4.04 -0.02 4.23 16 15 C 0.03 0.65 1.38 -155.66 -0.22 0.44 16 16 C -0.50 -13.01 8.63 -34.44 -0.30 -13.31 16 17 H 0.06 1.56 7.82 -52.48 -0.41 1.14 16 18 C 0.07 1.97 5.39 -17.82 -0.10 1.87 16 19 N -0.87 -24.44 12.91 55.43 0.72 -23.72 16 20 Si 0.89 20.79 29.55 -169.99 -5.02 15.77 16 21 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 22 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 C -0.21 -4.48 9.96 -26.70 -0.27 -4.75 16 25 C -0.15 -3.41 9.41 -26.69 -0.25 -3.66 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.08 0.40 8.07 -51.93 -0.42 -0.02 16 30 H 0.08 0.78 7.42 -51.93 -0.39 0.40 16 31 H 0.06 0.30 6.95 -51.93 -0.36 -0.06 16 32 H 0.07 0.29 8.07 -51.92 -0.42 -0.12 16 33 H 0.08 0.49 6.01 -51.93 -0.31 0.18 16 34 H 0.07 0.60 4.53 -51.93 -0.24 0.36 16 35 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.40 6.12 7.80 -40.82 -0.32 5.80 16 38 H 0.40 7.55 8.38 -40.82 -0.34 7.21 16 39 H 0.07 1.86 8.14 -51.93 -0.42 1.44 16 40 H 0.03 0.80 8.09 -51.93 -0.42 0.38 16 41 H 0.26 7.00 8.32 -40.82 -0.34 6.66 16 42 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 43 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 44 H 0.08 2.05 8.14 -51.93 -0.42 1.63 16 45 H 0.06 1.44 8.14 -51.93 -0.42 1.01 16 LS Contribution 370.64 15.07 5.59 5.59 Total: -1.00 -32.07 370.64 -7.96 -40.04 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: -7.34 Total: 11.83 kcal Atomic # 6 Polarization: 6.33 SS G_CDS: -0.90 Total: 5.43 kcal Atomic # 7 Polarization: -56.38 SS G_CDS: -0.46 Total: -56.84 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: 0.17 Total: -21.82 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -32.07 -7.96 -40.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430963690.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.193 kcal (2) G-P(sol) polarization free energy of solvation -32.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds