Wall clock time and date at job start Tue Mar 31 2020 03:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46496 * 109.47271 * 2 1 4 4 C 1.34781 * 119.99783 * 180.02562 * 3 2 1 5 5 O 1.21279 * 120.00253 * 0.02562 * 4 3 2 6 6 C 1.50704 * 119.99867 * 179.97438 * 4 3 2 7 7 N 1.46491 * 109.47024 * 180.02562 * 6 4 3 8 8 C 1.46504 * 120.00013 * 269.99944 * 7 6 4 9 9 C 1.52996 * 109.47070 * 273.17547 * 8 7 6 10 10 C 1.34777 * 120.00504 * 89.99881 * 7 6 4 11 11 O 1.21588 * 119.99341 * 354.16208 * 10 7 6 12 12 N 1.34773 * 120.00238 * 174.43189 * 10 7 6 13 13 C 1.46508 * 119.99918 * 184.55350 * 12 10 7 14 14 C 1.53002 * 109.46853 * 175.02341 * 13 12 10 15 15 C 1.50694 * 115.55224 * 306.47615 * 14 13 12 16 16 H 1.07996 * 119.99773 * 144.20343 * 15 14 13 17 17 C 1.37876 * 120.00163 * 324.20787 * 15 14 13 18 18 N 1.31516 * 119.99909 * 3.29693 * 17 15 14 19 19 Si 1.86803 * 119.99689 * 183.29693 * 17 15 14 20 20 H 1.48498 * 109.47081 * 90.00142 * 19 17 15 21 21 H 1.48505 * 109.46831 * 209.99901 * 19 17 15 22 22 H 1.48496 * 109.47452 * 329.99737 * 19 17 15 23 23 C 1.53003 * 117.49416 * 160.80818 * 14 13 12 24 24 C 1.53000 * 117.49355 * 92.15143 * 14 13 12 25 25 H 1.09003 * 109.47190 * 59.99544 * 1 2 3 26 26 H 1.08993 * 109.47481 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47312 * 300.00340 * 1 2 3 28 28 H 1.09004 * 109.46633 * 239.99980 * 2 1 3 29 29 H 1.09003 * 109.47190 * 120.00456 * 2 1 3 30 30 H 0.96999 * 120.00500 * 359.97438 * 3 2 1 31 31 H 1.08996 * 109.46791 * 59.99664 * 6 4 3 32 32 H 1.09001 * 109.46966 * 300.00112 * 6 4 3 33 33 H 1.09003 * 109.47123 * 33.18006 * 8 7 6 34 34 H 1.09003 * 109.47041 * 153.17610 * 8 7 6 35 35 H 1.08996 * 109.47613 * 299.99823 * 9 8 7 36 36 H 1.09003 * 109.47137 * 60.00122 * 9 8 7 37 37 H 1.09007 * 109.46940 * 179.97438 * 9 8 7 38 38 H 0.96995 * 120.00561 * 4.55683 * 12 10 7 39 39 H 1.08994 * 109.47246 * 295.02910 * 13 12 10 40 40 H 1.08999 * 109.46676 * 55.02553 * 13 12 10 41 41 H 0.96996 * 119.99581 * 185.00565 * 18 17 15 42 42 H 1.08997 * 117.50122 * 359.97438 * 23 14 13 43 43 H 1.09001 * 117.49783 * 145.02362 * 23 14 13 44 44 H 1.09007 * 117.49305 * 214.97590 * 24 14 13 45 45 H 1.08993 * 117.50433 * 359.97126 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 3.3435 1.6274 -0.0005 5 8 4.1316 0.7055 -0.0015 6 6 3.8459 3.0482 -0.0011 7 7 5.3108 3.0481 -0.0022 8 6 6.0443 3.0483 1.2660 9 6 6.2305 4.4886 1.7472 10 6 5.9839 3.0479 -1.1699 11 8 5.3798 2.9406 -2.2196 12 7 7.3269 3.1610 -1.1736 13 6 8.0500 3.2612 -2.4438 14 6 9.5352 3.5034 -2.1674 15 6 9.8470 4.6721 -1.2686 16 1 10.6722 4.6142 -0.5743 17 6 9.0788 5.8152 -1.3327 18 7 8.0348 5.8620 -2.1312 19 14 9.5209 7.2975 -0.2853 20 1 10.4491 8.1775 -1.0397 21 1 8.2867 8.0519 0.0507 22 1 10.1781 6.8414 0.9657 23 6 10.5229 3.1959 -3.2948 24 6 10.4452 2.2770 -2.0730 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8932 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.3881 2.1185 -0.0004 31 1 3.4828 3.5622 0.8888 32 1 3.4822 3.5618 -0.8911 33 1 5.4816 2.4860 2.0112 34 1 7.0201 2.5844 1.1214 35 1 6.7932 5.0508 1.0021 36 1 5.2547 4.9524 1.8918 37 1 6.7759 4.4886 2.6911 38 1 7.8147 3.1761 -0.3354 39 1 7.9311 2.3337 -3.0038 40 1 7.6488 4.0910 -3.0258 41 1 7.5374 6.6887 -2.2312 42 1 10.1146 2.8208 -4.2332 43 1 11.3984 3.8388 -3.3861 44 1 11.2697 2.3158 -1.3610 45 1 9.9858 1.2978 -2.2073 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000431056327.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:49:35 Heat of formation + Delta-G solvation = -57.239695 kcal Electronic energy + Delta-G solvation = -25345.256448 eV Core-core repulsion = 21784.143609 eV Total energy + Delta-G solvation = -3561.112839 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.40368 -40.20842 -38.54108 -36.82003 -36.16912 -34.73435 -34.06472 -32.23511 -31.23201 -28.93845 -27.59315 -26.53328 -24.19070 -23.71221 -22.95841 -21.90741 -21.09749 -20.46177 -19.22431 -18.18467 -17.98641 -17.51044 -16.72127 -16.64635 -16.52868 -16.02703 -15.61121 -15.30764 -15.07698 -14.84378 -14.68247 -14.60618 -14.24110 -13.68709 -13.50224 -13.32933 -13.26520 -13.02989 -12.91207 -12.68697 -12.61035 -12.51247 -12.33093 -12.27437 -12.04250 -12.02169 -11.51196 -11.17403 -11.03399 -10.81407 -10.65045 -10.13354 -10.08661 -9.86471 -9.27607 -7.89571 -6.14761 1.44052 1.48261 1.55931 1.63974 1.74888 2.21413 2.45009 2.59828 3.03121 3.34786 3.67768 3.88100 4.03834 4.15848 4.17779 4.23688 4.29124 4.35843 4.48730 4.52018 4.54156 4.56160 4.77292 4.83581 4.88130 4.94811 4.95980 4.98953 5.06076 5.13268 5.26132 5.29418 5.41100 5.49693 5.53633 5.62022 5.63063 5.96078 6.00794 6.12523 6.41664 6.58330 6.85953 7.27162 7.31861 7.50028 7.85023 8.98143 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.019549 B = 0.004285 C = 0.003846 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1431.925393 B = 6533.523869 C = 7278.718692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.111 3.889 3 N -0.718 5.718 4 C 0.492 3.508 5 O -0.579 6.579 6 C 0.117 3.883 7 N -0.616 5.616 8 C 0.114 3.886 9 C -0.165 4.165 10 C 0.704 3.296 11 O -0.649 6.649 12 N -0.694 5.694 13 C 0.198 3.802 14 C 0.011 3.989 15 C -0.505 4.505 16 H 0.058 0.942 17 C 0.042 3.958 18 N -0.885 5.885 19 Si 0.945 3.055 20 H -0.285 1.285 21 H -0.287 1.287 22 H -0.264 1.264 23 C -0.197 4.197 24 C -0.191 4.191 25 H 0.067 0.933 26 H 0.083 0.917 27 H 0.077 0.923 28 H 0.041 0.959 29 H 0.058 0.942 30 H 0.417 0.583 31 H 0.150 0.850 32 H 0.103 0.897 33 H 0.098 0.902 34 H 0.064 0.936 35 H 0.031 0.969 36 H 0.072 0.928 37 H 0.086 0.914 38 H 0.398 0.602 39 H 0.001 0.999 40 H 0.078 0.922 41 H 0.256 0.744 42 H 0.073 0.927 43 H 0.081 0.919 44 H 0.086 0.914 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.787 -4.624 10.420 17.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.013 4.013 3 N -0.373 5.373 4 C 0.278 3.722 5 O -0.458 6.458 6 C -0.010 4.010 7 N -0.352 5.352 8 C -0.008 4.008 9 C -0.223 4.223 10 C 0.406 3.594 11 O -0.532 6.532 12 N -0.345 5.345 13 C 0.073 3.927 14 C 0.010 3.990 15 C -0.542 4.542 16 H 0.076 0.924 17 C -0.160 4.160 18 N -0.522 5.522 19 Si 0.772 3.228 20 H -0.211 1.211 21 H -0.213 1.213 22 H -0.188 1.188 23 C -0.236 4.236 24 C -0.228 4.228 25 H 0.086 0.914 26 H 0.101 0.899 27 H 0.096 0.904 28 H 0.059 0.941 29 H 0.076 0.924 30 H 0.255 0.745 31 H 0.168 0.832 32 H 0.121 0.879 33 H 0.116 0.884 34 H 0.082 0.918 35 H 0.051 0.949 36 H 0.091 0.909 37 H 0.105 0.895 38 H 0.234 0.766 39 H 0.020 0.980 40 H 0.096 0.904 41 H 0.065 0.935 42 H 0.091 0.909 43 H 0.099 0.901 44 H 0.104 0.896 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -13.819 -5.243 9.662 17.658 hybrid contribution 0.481 1.009 0.222 1.140 sum -13.339 -4.234 9.885 17.133 Atomic orbital electron populations 1.21937 0.91374 1.04181 1.03479 1.21340 0.96508 0.82575 1.00873 1.45948 1.06313 1.09856 1.75202 1.21785 0.82863 0.92708 0.74887 1.90674 1.56839 1.47667 1.50667 1.21282 0.80068 0.92880 1.06807 1.46678 1.05452 1.78149 1.04915 1.21553 0.96809 0.97923 0.84520 1.22173 1.02762 0.95827 1.01556 1.16031 0.82479 0.77290 0.83643 1.90757 1.69035 1.61008 1.32446 1.44706 1.03779 1.75713 1.10342 1.20555 0.90831 0.96863 0.84457 1.19282 0.88091 0.93943 0.97673 1.20641 1.14283 0.98532 1.20769 0.92415 1.25533 0.93755 1.00524 0.96225 1.70098 1.17738 1.26161 1.38180 0.85755 0.77346 0.80047 0.79675 1.21092 1.21260 1.18808 1.22955 1.03654 1.04226 0.92716 1.22945 1.04096 0.94522 1.01263 0.91427 0.89852 0.90420 0.94050 0.92351 0.74542 0.83240 0.87928 0.88394 0.91792 0.94944 0.90913 0.89504 0.76612 0.98041 0.90441 0.93466 0.90866 0.90091 0.89561 0.90401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 10.03 71.98 0.72 -0.84 16 2 C 0.11 2.10 6.39 86.38 0.55 2.65 16 3 N -0.72 -14.45 5.56 -463.05 -2.57 -17.02 16 4 C 0.49 14.57 7.90 87.66 0.69 15.27 16 5 O -0.58 -23.24 16.43 -3.03 -0.05 -23.29 16 6 C 0.12 3.20 5.86 85.64 0.50 3.70 16 7 N -0.62 -21.90 1.96 -844.21 -1.66 -23.55 16 8 C 0.11 3.29 5.89 86.38 0.51 3.80 16 9 C -0.16 -4.34 10.24 71.98 0.74 -3.60 16 10 C 0.70 32.93 8.25 179.06 1.48 34.41 16 11 O -0.65 -35.21 15.99 -3.99 -0.06 -35.27 16 12 N -0.69 -32.73 4.90 -478.53 -2.35 -35.08 16 13 C 0.20 10.16 4.61 86.38 0.40 10.56 16 14 C 0.01 0.53 2.04 -52.93 -0.11 0.42 16 15 C -0.50 -25.73 8.40 25.60 0.22 -25.52 16 16 H 0.06 2.91 7.81 -2.91 -0.02 2.89 16 17 C 0.04 2.13 5.29 84.65 0.45 2.57 16 18 N -0.89 -48.00 10.18 21.45 0.22 -47.79 16 19 Si 0.95 40.74 29.54 68.60 2.03 42.76 16 20 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 21 H -0.29 -12.29 7.11 99.48 0.71 -11.58 16 22 H -0.26 -10.86 7.11 99.48 0.71 -10.16 16 23 C -0.20 -8.77 9.96 30.62 0.30 -8.46 16 24 C -0.19 -8.08 9.92 30.62 0.30 -7.77 16 25 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 28 H 0.04 0.99 8.14 -2.38 -0.02 0.97 16 29 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.42 5.16 8.47 -92.71 -0.79 4.38 16 31 H 0.15 2.49 8.07 -2.39 -0.02 2.47 16 32 H 0.10 3.01 7.51 -2.39 -0.02 2.99 16 33 H 0.10 2.28 8.10 -2.39 -0.02 2.26 16 34 H 0.06 2.01 6.37 -2.39 -0.02 1.99 16 35 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.09 1.86 8.14 -2.38 -0.02 1.84 16 38 H 0.40 17.71 5.84 -92.71 -0.54 17.17 16 39 H 0.00 0.08 8.08 -2.39 -0.02 0.06 16 40 H 0.08 4.54 5.97 -2.39 -0.01 4.53 16 41 H 0.26 13.62 8.32 -92.71 -0.77 12.85 16 42 H 0.07 3.13 8.14 -2.39 -0.02 3.11 16 43 H 0.08 3.54 8.14 -2.39 -0.02 3.52 16 44 H 0.09 3.44 8.14 -2.38 -0.02 3.42 16 45 H 0.08 3.13 8.14 -2.39 -0.02 3.11 16 Total: -1.00 -74.17 372.89 1.97 -72.19 By element: Atomic # 1 Polarization: 40.20 SS G_CDS: -0.34 Total: 39.86 kcal Atomic # 6 Polarization: 20.43 SS G_CDS: 6.75 Total: 27.18 kcal Atomic # 7 Polarization: -117.08 SS G_CDS: -6.36 Total: -123.44 kcal Atomic # 8 Polarization: -58.44 SS G_CDS: -0.11 Total: -58.56 kcal Atomic # 14 Polarization: 40.74 SS G_CDS: 2.03 Total: 42.76 kcal Total: -74.17 1.97 -72.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000431056327.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.954 kcal (2) G-P(sol) polarization free energy of solvation -74.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds