Wall clock time and date at job start Tue Mar 31 2020 03:38:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 N 1.46900 * 109.47285 * 2 1
4 4 C 1.46907 * 110.99791 * 310.55456 * 3 2 1
5 5 C 1.52996 * 109.46908 * 299.48987 * 4 3 2
6 6 C 1.50695 * 109.47291 * 185.21712 * 5 4 3
7 7 O 1.21283 * 119.99926 * 359.97438 * 6 5 4
8 8 N 1.34776 * 120.00571 * 180.02562 * 6 5 4
9 9 C 1.46502 * 119.99740 * 359.97438 * 8 6 5
10 10 C 1.46497 * 120.00466 * 179.97438 * 8 6 5
11 11 C 1.50700 * 109.46970 * 89.99820 * 10 8 6
12 12 H 1.08003 * 120.00517 * 0.02562 * 11 10 8
13 13 C 1.37877 * 119.99872 * 180.02562 * 11 10 8
14 14 N 1.31512 * 120.00240 * 359.97438 * 13 11 10
15 15 Si 1.86806 * 120.00052 * 180.02562 * 13 11 10
16 16 H 1.48504 * 109.47091 * 89.99681 * 15 13 11
17 17 H 1.48501 * 109.47184 * 209.99765 * 15 13 11
18 18 H 1.48498 * 109.46896 * 330.00057 * 15 13 11
19 19 C 1.46898 * 110.99826 * 74.50573 * 3 2 1
20 20 H 1.09006 * 110.43463 * 179.13430 * 19 3 2
21 21 C 1.54626 * 110.48988 * 56.58750 * 19 3 2
22 22 C 1.54475 * 101.79936 * 266.10283 * 21 19 3
23 23 N 1.46818 * 105.44614 * 334.62649 * 22 21 19
24 24 C 1.34425 * 111.31574 * 16.96653 * 23 22 21
25 25 O 1.21283 * 124.94078 * 179.58772 * 24 23 22
26 26 H 1.09003 * 109.47200 * 288.45900 * 1 2 3
27 27 H 1.09000 * 109.47172 * 48.46420 * 1 2 3
28 28 H 1.09009 * 109.47009 * 168.46020 * 1 2 3
29 29 H 1.09007 * 109.47170 * 240.00213 * 2 1 3
30 30 H 1.09000 * 109.47720 * 120.00126 * 2 1 3
31 31 H 1.08994 * 109.47388 * 59.48850 * 4 3 2
32 32 H 1.08999 * 109.46852 * 179.49146 * 4 3 2
33 33 H 1.09007 * 109.47396 * 305.21878 * 5 4 3
34 34 H 1.09000 * 109.47319 * 65.21895 * 5 4 3
35 35 H 1.09000 * 109.47179 * 90.00059 * 9 8 6
36 36 H 1.08996 * 109.47159 * 209.99908 * 9 8 6
37 37 H 1.09004 * 109.47162 * 330.00159 * 9 8 6
38 38 H 1.08999 * 109.47367 * 209.99784 * 10 8 6
39 39 H 1.09004 * 109.47242 * 330.00256 * 10 8 6
40 40 H 0.97005 * 120.00165 * 179.97438 * 14 13 11
41 41 H 1.09003 * 110.96601 * 24.24005 * 21 19 3
42 42 H 1.08998 * 110.96822 * 147.96062 * 21 19 3
43 43 H 1.08998 * 110.24557 * 93.60053 * 22 21 19
44 44 H 1.09001 * 110.24402 * 215.59887 * 22 21 19
45 45 H 0.97000 * 124.34168 * 197.00184 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 7 2.0196 1.3850 0.0000
4 6 1.3544 2.1785 -1.0421
5 6 1.6460 1.5661 -2.4135
6 6 1.0721 2.4500 -3.4906
7 8 0.4870 3.4693 -3.1909
8 7 1.2080 2.1075 -4.7870
9 6 1.9142 0.8760 -5.1491
10 6 0.6497 2.9665 -5.8341
11 6 1.6816 3.9809 -6.2550
12 1 2.6561 3.9850 -5.7895
13 6 1.3817 4.9037 -7.2345
14 7 0.1953 4.8984 -7.8019
15 14 2.6611 6.1607 -7.7568
16 1 3.4705 5.6088 -8.8729
17 1 1.9810 7.4022 -8.2053
18 1 3.5490 6.4701 -6.6074
19 6 1.8497 2.0034 1.3216
20 1 2.2298 3.0250 1.3154
21 6 2.5654 1.1663 2.4069
22 6 1.4208 0.2609 2.9133
23 7 0.1836 0.9985 2.6288
24 6 0.3944 1.9795 1.7342
25 8 -0.4582 2.7349 1.3179
26 1 -0.3634 0.3254 0.9748
27 1 -0.3633 0.6814 -0.7692
28 1 -0.3633 -1.0070 -0.2056
29 1 1.8933 -0.5138 -0.8901
30 1 1.8934 -0.5138 0.8899
31 1 0.2788 2.1804 -0.8663
32 1 1.7289 3.2018 -1.0140
33 1 2.7238 1.4790 -2.5508
34 1 1.1909 0.5775 -2.4741
35 1 1.2045 0.0500 -5.1941
36 1 2.3878 1.0016 -6.1227
37 1 2.6759 0.6602 -4.3997
38 1 0.3683 2.3568 -6.6927
39 1 -0.2308 3.4818 -5.4502
40 1 -0.0158 5.5479 -8.4908
41 1 3.3701 0.5722 1.9738
42 1 2.9412 1.8042 3.2068
43 1 1.4255 -0.6883 2.3776
44 1 1.5209 0.0903 3.9852
45 1 -0.6755 0.8034 3.0346
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000440959875.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:38:39
Heat of formation + Delta-G solvation = -34.239343 kcal
Electronic energy + Delta-G solvation = -25309.488401 eV
Core-core repulsion = 21749.372932 eV
Total energy + Delta-G solvation = -3560.115469 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 297.184 amu
Computer time = 0.46 seconds
Orbital eigenvalues (eV)
-41.63253 -38.96290 -37.27515 -36.21885 -34.71331 -32.61113 -31.90462 -31.08484
-29.26506 -27.72601 -26.64494 -25.68310 -24.33361 -22.77322 -21.98256 -21.13705
-19.68101 -18.30614 -17.66477 -17.63292 -16.58100 -16.34067 -15.97664 -15.25676
-15.09925 -14.44378 -14.35509 -14.27432 -13.97872 -13.88535 -13.73535 -13.29019
-12.91512 -12.73534 -12.41415 -12.15493 -12.08049 -11.94342 -11.79333 -11.64457
-11.41198 -11.20783 -11.10930 -11.02351 -10.84904 -10.65642 -10.49950 -10.34152
-10.10357 -9.56820 -9.19880 -8.80340 -8.39229 -8.38526 -7.56520 -5.99059
-4.03667 2.34516 3.04457 3.33767 3.40277 3.44346 3.54061 3.58783
4.03445 4.15804 4.23201 4.50054 4.54947 4.63147 4.78613 5.03705
5.04717 5.18521 5.27016 5.32518 5.34485 5.35498 5.48738 5.50847
5.53130 5.65950 5.72005 5.74626 5.89445 5.97189 6.09106 6.18228
6.27026 6.36468 6.45916 6.68458 6.84916 6.87512 7.12417 7.51146
7.61625 7.97688 7.99804 8.29490 8.49871 8.96446 9.18597 9.61346
11.09051
Molecular weight = 297.18amu
Principal moments of inertia in cm(-1)
A = 0.027330 B = 0.003279 C = 0.003202
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1024.266179 B = 8535.994502 C = 8741.382884
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.232 4.232
2 C 0.029 3.971
3 N -0.507 5.507
4 C 0.058 3.942
5 C -0.134 4.134
6 C 0.504 3.496
7 O -0.540 6.540
8 N -0.604 5.604
9 C 0.085 3.915
10 C 0.245 3.755
11 C -0.525 4.525
12 H 0.057 0.943
13 C 0.060 3.940
14 N -0.896 5.896
15 Si 0.898 3.102
16 H -0.281 1.281
17 H -0.285 1.285
18 H -0.274 1.274
19 C 0.050 3.950
20 H 0.118 0.882
21 C -0.129 4.129
22 C 0.093 3.907
23 N -0.738 5.738
24 C 0.497 3.503
25 O -0.516 6.516
26 H 0.080 0.920
27 H 0.070 0.930
28 H 0.059 0.941
29 H 0.082 0.918
30 H 0.084 0.916
31 H 0.063 0.937
32 H 0.088 0.912
33 H 0.095 0.905
34 H 0.082 0.918
35 H 0.042 0.958
36 H 0.073 0.927
37 H 0.058 0.942
38 H 0.031 0.969
39 H 0.043 0.957
40 H 0.263 0.737
41 H 0.103 0.897
42 H 0.089 0.911
43 H 0.078 0.922
44 H 0.079 0.921
45 H 0.407 0.593
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.843 -15.738 21.617 27.370
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.291 4.291
2 C -0.098 4.098
3 N -0.231 5.231
4 C -0.069 4.069
5 C -0.174 4.174
6 C 0.290 3.710
7 O -0.418 6.418
8 N -0.337 5.337
9 C -0.060 4.060
10 C 0.126 3.874
11 C -0.564 4.564
12 H 0.076 0.924
13 C -0.142 4.142
14 N -0.535 5.535
15 Si 0.726 3.274
16 H -0.207 1.207
17 H -0.211 1.211
18 H -0.199 1.199
19 C -0.062 4.062
20 H 0.136 0.864
21 C -0.167 4.167
22 C -0.031 4.031
23 N -0.396 5.396
24 C 0.282 3.718
25 O -0.389 6.389
26 H 0.098 0.902
27 H 0.088 0.912
28 H 0.078 0.922
29 H 0.100 0.900
30 H 0.102 0.898
31 H 0.081 0.919
32 H 0.106 0.894
33 H 0.113 0.887
34 H 0.100 0.900
35 H 0.060 0.940
36 H 0.091 0.909
37 H 0.076 0.924
38 H 0.049 0.951
39 H 0.061 0.939
40 H 0.072 0.928
41 H 0.121 0.879
42 H 0.107 0.893
43 H 0.096 0.904
44 H 0.097 0.903
45 H 0.246 0.754
Dipole moment (debyes) X Y Z Total
from point charges 5.585 -14.649 21.213 26.378
hybrid contribution -0.555 0.419 -0.121 0.706
sum 5.030 -14.230 21.093 25.936
Atomic orbital electron populations
1.23158 0.97993 1.02979 1.04960 1.22550 0.93562 0.90278 1.03411
1.62681 1.56241 1.02344 1.01806 1.22041 0.98892 0.97374 0.88582
1.21639 1.02866 0.99422 0.93518 1.20270 0.80857 0.86364 0.83552
1.90690 1.42917 1.26167 1.82027 1.48148 1.55201 1.23625 1.06707
1.21621 0.95959 0.86637 1.01757 1.19272 0.95026 0.88898 0.84252
1.21450 0.99686 1.15142 1.20097 0.92446 1.24948 0.95584 0.97441
0.96230 1.69937 1.20325 1.36559 1.26670 0.86490 0.81353 0.80864
0.78680 1.20676 1.21106 1.19852 1.22616 0.91500 1.01620 0.90506
0.86369 1.22721 0.97649 0.98669 0.97667 1.22318 0.83785 0.95696
1.01311 1.46459 1.12188 1.35082 1.45863 1.21846 0.92601 0.79228
0.78140 1.90838 1.50591 1.41929 1.55574 0.90195 0.91156 0.92231
0.90001 0.89815 0.91877 0.89404 0.88670 0.89953 0.93971 0.90867
0.92364 0.95120 0.93890 0.92759 0.87866 0.89255 0.90419 0.90266
0.75375
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.23 -2.53 8.33 37.15 0.31 -2.22 16
2 C 0.03 0.27 4.94 -3.83 -0.02 0.25 16
3 N -0.51 -5.72 4.82 -226.66 -1.09 -6.81 16
4 C 0.06 0.90 3.46 -3.82 -0.01 0.89 16
5 C -0.13 -2.07 3.76 -27.89 -0.10 -2.18 16
6 C 0.50 10.97 7.67 -10.99 -0.08 10.89 16
7 O -0.54 -14.40 15.49 5.56 0.09 -14.31 16
8 N -0.60 -13.35 2.86 -182.96 -0.52 -13.87 16
9 C 0.08 1.37 10.24 59.85 0.61 1.99 16
10 C 0.24 6.66 5.16 -5.20 -0.03 6.64 16
11 C -0.52 -15.37 9.39 -34.44 -0.32 -15.69 16
12 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16
13 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16
14 N -0.90 -27.36 13.29 55.43 0.74 -26.62 16
15 Si 0.90 22.39 29.54 -169.99 -5.02 17.37 16
16 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16
17 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16
18 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16
19 C 0.05 0.50 3.22 -67.72 -0.22 0.29 16
20 H 0.12 1.26 8.14 -51.93 -0.42 0.83 16
21 C -0.13 -0.73 6.21 -25.10 -0.16 -0.88 16
22 C 0.09 0.44 6.79 -3.09 -0.02 0.42 16
23 N -0.74 -5.77 4.37 -59.16 -0.26 -6.03 16
24 C 0.50 6.00 4.53 -10.86 -0.05 5.95 16
25 O -0.52 -8.93 16.81 5.55 0.09 -8.84 16
26 H 0.08 0.87 3.57 -51.93 -0.19 0.68 16
27 H 0.07 1.00 5.32 -51.93 -0.28 0.73 16
28 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16
29 H 0.08 0.73 7.04 -51.93 -0.37 0.37 16
30 H 0.08 0.56 4.00 -51.93 -0.21 0.35 16
31 H 0.06 1.14 4.54 -51.93 -0.24 0.90 16
32 H 0.09 1.55 7.94 -51.93 -0.41 1.14 16
33 H 0.10 1.33 7.40 -51.93 -0.38 0.94 16
34 H 0.08 1.10 6.55 -51.93 -0.34 0.76 16
35 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16
36 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16
37 H 0.06 0.77 6.44 -51.93 -0.33 0.43 16
38 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16
39 H 0.04 1.32 7.42 -51.93 -0.39 0.94 16
40 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16
41 H 0.10 0.50 7.71 -51.93 -0.40 0.09 16
42 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16
43 H 0.08 0.31 5.94 -51.93 -0.31 0.00 16
44 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16
45 H 0.41 2.73 8.96 -40.82 -0.37 2.36 16
LS Contribution 343.46 15.07 5.18 5.18
Total: -1.00 -37.34 343.46 -7.69 -45.03
By element:
Atomic # 1 Polarization: 7.61 SS G_CDS: -6.70 Total: 0.91 kcal
Atomic # 6 Polarization: 8.19 SS G_CDS: -0.19 Total: 7.99 kcal
Atomic # 7 Polarization: -52.20 SS G_CDS: -1.14 Total: -53.33 kcal
Atomic # 8 Polarization: -23.33 SS G_CDS: 0.18 Total: -23.15 kcal
Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal
Total LS contribution 5.18 Total: 5.18 kcal
Total: -37.34 -7.69 -45.03 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000440959875.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 10.789 kcal
(2) G-P(sol) polarization free energy of solvation -37.337 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.548 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.691 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.028 kcal
(6) G-S(sol) free energy of system = (1) + (5) -34.239 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.46 seconds