Wall clock time and date at job start Tue Mar 31 2020 03:38:39
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 N 1.46900 * 109.47285 * 2 1
4 4 C 1.46907 * 110.99791 * 310.55456 * 3 2 1
5 5 C 1.52996 * 109.46908 * 299.48987 * 4 3 2
6 6 C 1.50695 * 109.47291 * 185.21712 * 5 4 3
7 7 O 1.21283 * 119.99926 * 359.97438 * 6 5 4
8 8 N 1.34776 * 120.00571 * 180.02562 * 6 5 4
9 9 C 1.46502 * 119.99740 * 359.97438 * 8 6 5
10 10 C 1.46497 * 120.00466 * 179.97438 * 8 6 5
11 11 C 1.50700 * 109.46970 * 89.99820 * 10 8 6
12 12 H 1.08003 * 120.00517 * 0.02562 * 11 10 8
13 13 C 1.37877 * 119.99872 * 180.02562 * 11 10 8
14 14 N 1.31512 * 120.00240 * 359.97438 * 13 11 10
15 15 Si 1.86806 * 120.00052 * 180.02562 * 13 11 10
16 16 H 1.48504 * 109.47091 * 89.99681 * 15 13 11
17 17 H 1.48501 * 109.47184 * 209.99765 * 15 13 11
18 18 H 1.48498 * 109.46896 * 330.00057 * 15 13 11
19 19 C 1.46898 * 110.99826 * 74.50573 * 3 2 1
20 20 H 1.09006 * 110.43463 * 179.13430 * 19 3 2
21 21 C 1.54626 * 110.48988 * 56.58750 * 19 3 2
22 22 C 1.54475 * 101.79936 * 266.10283 * 21 19 3
23 23 N 1.46818 * 105.44614 * 334.62649 * 22 21 19
24 24 C 1.34425 * 111.31574 * 16.96653 * 23 22 21
25 25 O 1.21283 * 124.94078 * 179.58772 * 24 23 22
26 26 H 1.09003 * 109.47200 * 288.45900 * 1 2 3
27 27 H 1.09000 * 109.47172 * 48.46420 * 1 2 3
28 28 H 1.09009 * 109.47009 * 168.46020 * 1 2 3
29 29 H 1.09007 * 109.47170 * 240.00213 * 2 1 3
30 30 H 1.09000 * 109.47720 * 120.00126 * 2 1 3
31 31 H 1.08994 * 109.47388 * 59.48850 * 4 3 2
32 32 H 1.08999 * 109.46852 * 179.49146 * 4 3 2
33 33 H 1.09007 * 109.47396 * 305.21878 * 5 4 3
34 34 H 1.09000 * 109.47319 * 65.21895 * 5 4 3
35 35 H 1.09000 * 109.47179 * 90.00059 * 9 8 6
36 36 H 1.08996 * 109.47159 * 209.99908 * 9 8 6
37 37 H 1.09004 * 109.47162 * 330.00159 * 9 8 6
38 38 H 1.08999 * 109.47367 * 209.99784 * 10 8 6
39 39 H 1.09004 * 109.47242 * 330.00256 * 10 8 6
40 40 H 0.97005 * 120.00165 * 179.97438 * 14 13 11
41 41 H 1.09003 * 110.96601 * 24.24005 * 21 19 3
42 42 H 1.08998 * 110.96822 * 147.96062 * 21 19 3
43 43 H 1.08998 * 110.24557 * 93.60053 * 22 21 19
44 44 H 1.09001 * 110.24402 * 215.59887 * 22 21 19
45 45 H 0.97000 * 124.34168 * 197.00184 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 7 2.0196 1.3850 0.0000
4 6 1.3544 2.1785 -1.0421
5 6 1.6460 1.5661 -2.4135
6 6 1.0721 2.4500 -3.4906
7 8 0.4870 3.4693 -3.1909
8 7 1.2080 2.1075 -4.7870
9 6 1.9142 0.8760 -5.1491
10 6 0.6497 2.9665 -5.8341
11 6 1.6816 3.9809 -6.2550
12 1 2.6561 3.9850 -5.7895
13 6 1.3817 4.9037 -7.2345
14 7 0.1953 4.8984 -7.8019
15 14 2.6611 6.1607 -7.7568
16 1 3.4705 5.6088 -8.8729
17 1 1.9810 7.4022 -8.2053
18 1 3.5490 6.4701 -6.6074
19 6 1.8497 2.0034 1.3216
20 1 2.2298 3.0250 1.3154
21 6 2.5654 1.1663 2.4069
22 6 1.4208 0.2609 2.9133
23 7 0.1836 0.9985 2.6288
24 6 0.3944 1.9795 1.7342
25 8 -0.4582 2.7349 1.3179
26 1 -0.3634 0.3254 0.9748
27 1 -0.3633 0.6814 -0.7692
28 1 -0.3633 -1.0070 -0.2056
29 1 1.8933 -0.5138 -0.8901
30 1 1.8934 -0.5138 0.8899
31 1 0.2788 2.1804 -0.8663
32 1 1.7289 3.2018 -1.0140
33 1 2.7238 1.4790 -2.5508
34 1 1.1909 0.5775 -2.4741
35 1 1.2045 0.0500 -5.1941
36 1 2.3878 1.0016 -6.1227
37 1 2.6759 0.6602 -4.3997
38 1 0.3683 2.3568 -6.6927
39 1 -0.2308 3.4818 -5.4502
40 1 -0.0158 5.5479 -8.4908
41 1 3.3701 0.5722 1.9738
42 1 2.9412 1.8042 3.2068
43 1 1.4255 -0.6883 2.3776
44 1 1.5209 0.0903 3.9852
45 1 -0.6755 0.8034 3.0346
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000440959875.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 03:38:39
Heat of formation + Delta-G solvation = -65.193942 kcal
Electronic energy + Delta-G solvation = -25310.830693 eV
Core-core repulsion = 21749.372932 eV
Total energy + Delta-G solvation = -3561.457761 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 297.184 amu
Computer time = 0.54 seconds
Orbital eigenvalues (eV)
-42.44985 -40.66356 -38.32439 -37.11822 -36.55794 -34.75813 -32.81712 -32.19066
-30.28695 -29.41052 -27.58474 -27.20626 -25.75858 -24.33282 -22.66254 -22.21589
-20.56836 -19.87054 -18.72626 -18.62829 -18.44004 -17.60934 -17.32693 -17.03208
-16.47770 -16.10034 -15.56416 -15.21700 -14.94831 -14.88130 -14.73603 -14.29396
-14.16460 -14.05647 -13.75947 -13.49546 -13.45870 -13.32252 -13.19600 -12.88092
-12.79578 -12.55588 -12.36325 -12.25767 -12.21641 -12.07252 -11.93592 -11.72719
-11.63162 -11.33846 -10.65780 -10.62670 -9.86822 -9.43315 -9.35880 -8.23841
-6.39371 1.35017 1.39096 1.43397 1.49550 1.82794 2.26964 2.39045
2.41025 2.87425 3.05380 3.41477 3.56237 3.78588 3.89761 4.06962
4.07602 4.13901 4.28146 4.30897 4.39903 4.50747 4.59270 4.64468
4.67366 4.71927 4.80552 4.87590 4.95470 4.96582 5.03595 5.11104
5.14074 5.19199 5.21425 5.40597 5.54953 5.75830 5.83296 5.84126
5.95851 6.03061 6.04508 6.68053 6.77789 7.18750 7.26663 7.47942
8.83483
Molecular weight = 297.18amu
Principal moments of inertia in cm(-1)
A = 0.027330 B = 0.003279 C = 0.003202
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1024.266179 B = 8535.994502 C = 8741.382884
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.231 4.231
2 C 0.027 3.973
3 N -0.495 5.495
4 C 0.069 3.931
5 C -0.111 4.111
6 C 0.491 3.509
7 O -0.604 6.604
8 N -0.611 5.611
9 C 0.078 3.922
10 C 0.258 3.742
11 C -0.544 4.544
12 H 0.055 0.945
13 C 0.004 3.996
14 N -0.931 5.931
15 Si 0.972 3.028
16 H -0.259 1.259
17 H -0.281 1.281
18 H -0.272 1.272
19 C 0.039 3.961
20 H 0.102 0.898
21 C -0.116 4.116
22 C 0.089 3.911
23 N -0.723 5.723
24 C 0.488 3.512
25 O -0.585 6.585
26 H 0.077 0.923
27 H 0.028 0.972
28 H 0.077 0.923
29 H 0.096 0.904
30 H 0.121 0.879
31 H 0.031 0.969
32 H 0.053 0.947
33 H 0.124 0.876
34 H 0.114 0.886
35 H 0.069 0.931
36 H 0.066 0.934
37 H 0.098 0.902
38 H 0.024 0.976
39 H -0.009 1.009
40 H 0.267 0.733
41 H 0.124 0.876
42 H 0.106 0.894
43 H 0.096 0.904
44 H 0.113 0.887
45 H 0.413 0.587
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.039 -18.758 23.281 31.234
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.289 4.289
2 C -0.099 4.099
3 N -0.218 5.218
4 C -0.059 4.059
5 C -0.151 4.151
6 C 0.280 3.720
7 O -0.486 6.486
8 N -0.342 5.342
9 C -0.064 4.064
10 C 0.137 3.863
11 C -0.582 4.582
12 H 0.073 0.927
13 C -0.195 4.195
14 N -0.570 5.570
15 Si 0.796 3.204
16 H -0.184 1.184
17 H -0.207 1.207
18 H -0.197 1.197
19 C -0.073 4.073
20 H 0.120 0.880
21 C -0.153 4.153
22 C -0.033 4.033
23 N -0.379 5.379
24 C 0.274 3.726
25 O -0.464 6.464
26 H 0.096 0.904
27 H 0.048 0.952
28 H 0.096 0.904
29 H 0.114 0.886
30 H 0.139 0.861
31 H 0.049 0.951
32 H 0.072 0.928
33 H 0.142 0.858
34 H 0.132 0.868
35 H 0.088 0.912
36 H 0.085 0.915
37 H 0.117 0.883
38 H 0.042 0.958
39 H 0.010 0.990
40 H 0.076 0.924
41 H 0.142 0.858
42 H 0.124 0.876
43 H 0.114 0.886
44 H 0.131 0.869
45 H 0.253 0.747
Dipole moment (debyes) X Y Z Total
from point charges 8.834 -17.779 22.913 30.317
hybrid contribution -1.614 1.291 -0.564 2.142
sum 7.220 -16.488 22.349 28.696
Atomic orbital electron populations
1.23142 0.99499 1.02806 1.03501 1.22783 0.92161 0.88973 1.05995
1.62689 1.54995 1.02884 1.01259 1.21721 0.97197 0.96659 0.90367
1.21541 1.04047 0.98861 0.90651 1.21436 0.79819 0.86317 0.84440
1.90657 1.45657 1.29276 1.83010 1.48201 1.55294 1.24784 1.05951
1.21964 0.97157 0.84534 1.02734 1.18742 0.93304 0.89229 0.85068
1.21720 0.99853 1.16198 1.20464 0.92711 1.25935 0.97871 0.99529
0.96117 1.70065 1.22316 1.37508 1.27154 0.85355 0.78522 0.77909
0.78659 1.18405 1.20672 1.19723 1.22796 0.90992 1.02224 0.91294
0.87982 1.22798 0.97942 0.98391 0.96207 1.22654 0.81492 0.95418
1.03755 1.46492 1.13806 1.33696 1.43940 1.22244 0.92863 0.79226
0.78269 1.90801 1.52529 1.44829 1.58231 0.90446 0.95248 0.90429
0.88608 0.86078 0.95116 0.92810 0.85764 0.86831 0.91203 0.91482
0.88328 0.95780 0.99042 0.92381 0.85810 0.87560 0.88587 0.86897
0.74734
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.23 -4.72 8.33 71.98 0.60 -4.12 16
2 C 0.03 0.41 4.94 86.30 0.43 0.84 16
3 N -0.49 -10.39 4.82 -871.02 -4.20 -14.58 16
4 C 0.07 2.22 3.46 86.30 0.30 2.52 16
5 C -0.11 -3.34 3.76 29.85 0.11 -3.22 16
6 C 0.49 22.13 7.67 87.66 0.67 22.81 16
7 O -0.60 -34.70 15.49 -3.04 -0.05 -34.74 16
8 N -0.61 -27.47 2.86 -851.14 -2.43 -29.90 16
9 C 0.08 2.37 10.24 127.77 1.31 3.68 16
10 C 0.26 14.77 5.16 85.63 0.44 15.21 16
11 C -0.54 -32.81 9.39 25.60 0.24 -32.57 16
12 H 0.05 3.25 7.81 -2.91 -0.02 3.23 16
13 C 0.00 0.25 5.46 84.65 0.46 0.71 16
14 N -0.93 -58.54 13.29 21.45 0.28 -58.25 16
15 Si 0.97 46.45 29.54 68.60 2.03 48.47 16
16 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16
17 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16
18 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16
19 C 0.04 0.76 3.22 44.91 0.14 0.90 16
20 H 0.10 2.26 8.14 -2.38 -0.02 2.24 16
21 C -0.12 -0.83 6.21 31.65 0.20 -0.63 16
22 C 0.09 0.44 6.79 86.82 0.59 1.03 16
23 N -0.72 -9.97 4.37 -459.68 -2.01 -11.98 16
24 C 0.49 11.95 4.53 87.90 0.40 12.35 16
25 O -0.59 -21.99 16.81 -3.04 -0.05 -22.04 16
26 H 0.08 1.61 3.57 -2.39 -0.01 1.60 16
27 H 0.03 0.85 5.32 -2.39 -0.01 0.84 16
28 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16
29 H 0.10 1.23 7.04 -2.38 -0.02 1.22 16
30 H 0.12 0.94 4.00 -2.39 -0.01 0.93 16
31 H 0.03 1.21 4.54 -2.39 -0.01 1.20 16
32 H 0.05 2.06 7.94 -2.39 -0.02 2.04 16
33 H 0.12 3.06 7.40 -2.38 -0.02 3.04 16
34 H 0.11 2.73 6.55 -2.39 -0.02 2.72 16
35 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16
36 H 0.07 2.14 8.07 -2.39 -0.02 2.12 16
37 H 0.10 2.20 6.44 -2.39 -0.02 2.19 16
38 H 0.02 1.38 8.07 -2.39 -0.02 1.37 16
39 H -0.01 -0.57 7.42 -2.38 -0.02 -0.59 16
40 H 0.27 15.70 8.31 -92.70 -0.77 14.93 16
41 H 0.12 0.48 7.71 -2.39 -0.02 0.46 16
42 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16
43 H 0.10 0.20 5.94 -2.39 -0.01 0.18 16
44 H 0.11 -0.05 8.14 -2.39 -0.02 -0.07 16
45 H 0.41 4.92 8.96 -92.71 -0.83 4.08 16
Total: -1.00 -91.42 343.46 -0.35 -91.76
By element:
Atomic # 1 Polarization: 11.59 SS G_CDS: 0.18 Total: 11.77 kcal
Atomic # 6 Polarization: 13.60 SS G_CDS: 5.89 Total: 19.49 kcal
Atomic # 7 Polarization: -106.36 SS G_CDS: -8.35 Total: -114.71 kcal
Atomic # 8 Polarization: -56.69 SS G_CDS: -0.10 Total: -56.79 kcal
Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.47 kcal
Total: -91.42 -0.35 -91.76 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000440959875.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 26.570 kcal
(2) G-P(sol) polarization free energy of solvation -91.415 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.845 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.349 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.764 kcal
(6) G-S(sol) free energy of system = (1) + (5) -65.194 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.54 seconds