Wall clock time and date at job start Tue Mar 31 2020 03:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 109.47016 * 2 1 4 4 C 1.46501 * 120.00198 * 270.00204 * 3 2 1 5 5 C 1.50695 * 109.46931 * 269.99890 * 4 3 2 6 6 H 1.07995 * 120.00029 * 0.02562 * 5 4 3 7 7 C 1.37884 * 119.99854 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99641 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00042 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47077 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47100 * 119.99733 * 9 7 5 12 12 H 1.48498 * 109.47232 * 239.99878 * 9 7 5 13 13 C 1.34775 * 120.00004 * 90.00032 * 3 2 1 14 14 O 1.21276 * 120.00524 * 180.02562 * 13 3 2 15 15 C 1.50704 * 119.99873 * 0.27380 * 13 3 2 16 16 N 1.46899 * 109.47121 * 174.55279 * 15 13 3 17 17 C 1.46897 * 110.99918 * 293.91952 * 16 15 13 18 18 C 1.53003 * 109.47704 * 310.28479 * 17 16 15 19 19 C 1.46904 * 110.99950 * 169.97090 * 16 15 13 20 20 H 1.09000 * 110.43116 * 300.44089 * 19 16 15 21 21 C 1.54626 * 110.48608 * 177.75801 * 19 16 15 22 22 C 1.54480 * 101.76090 * 266.11657 * 21 19 16 23 23 N 1.46759 * 105.47412 * 334.58377 * 22 21 19 24 24 C 1.34417 * 111.30073 * 17.01831 * 23 22 21 25 25 O 1.21286 * 124.93621 * 179.55859 * 24 23 22 26 26 H 1.08999 * 109.47095 * 60.00061 * 1 2 3 27 27 H 1.09007 * 109.46746 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47157 * 299.99911 * 1 2 3 29 29 H 1.09004 * 109.46981 * 240.00432 * 2 1 3 30 30 H 1.08990 * 109.47218 * 120.00147 * 2 1 3 31 31 H 1.09000 * 109.47063 * 29.99923 * 4 3 2 32 32 H 1.08996 * 109.46997 * 149.99757 * 4 3 2 33 33 H 0.97007 * 119.99690 * 179.97438 * 8 7 5 34 34 H 1.09000 * 109.47403 * 294.55774 * 15 13 3 35 35 H 1.09001 * 109.46676 * 54.55524 * 15 13 3 36 36 H 1.09002 * 109.47153 * 70.28073 * 17 16 15 37 37 H 1.08998 * 109.47496 * 190.28267 * 17 16 15 38 38 H 1.08996 * 109.47513 * 173.25314 * 18 17 16 39 39 H 1.09003 * 109.46597 * 293.25858 * 18 17 16 40 40 H 1.09002 * 109.46713 * 53.24726 * 18 17 16 41 41 H 1.09000 * 110.96996 * 24.23346 * 21 19 16 42 42 H 1.08993 * 110.96879 * 147.99939 * 21 19 16 43 43 H 1.09006 * 110.24591 * 215.58404 * 22 21 19 44 44 H 1.09005 * 110.32356 * 93.62766 * 22 21 19 45 45 H 0.97006 * 124.34848 * 197.03842 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8352 -1.7037 6 1 4.3425 1.2304 -1.0962 7 6 4.1493 2.3907 -2.8774 8 7 3.3492 3.1268 -3.6175 9 14 5.9137 2.0979 -3.4163 10 1 6.6010 1.2416 -2.4165 11 1 5.9217 1.4193 -4.7373 12 1 6.6209 3.3992 -3.5240 13 6 2.2429 2.0166 1.1672 14 8 2.6467 3.1601 1.1673 15 6 1.9977 1.3041 2.4723 16 7 2.4370 2.1560 3.5854 17 6 3.8934 2.3459 3.5600 18 6 4.5826 0.9870 3.4202 19 6 2.0005 1.6040 4.8749 20 1 0.9138 1.5249 4.9067 21 6 2.5166 2.4790 6.0407 22 6 3.8328 1.7617 6.4140 23 7 3.6557 0.3697 5.9842 24 6 2.6369 0.2529 5.1151 25 8 2.2803 -0.7848 4.5983 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 1.5816 1.6878 -2.0284 32 1 2.0954 3.1411 -1.1383 33 1 3.6755 3.5180 -4.4430 34 1 0.9337 1.0911 2.5757 35 1 2.5584 0.3694 2.4869 36 1 4.1627 2.9785 2.7142 37 1 4.2140 2.8222 4.4865 38 1 5.6534 1.1353 3.2811 39 1 4.4113 0.3984 4.3215 40 1 4.1738 0.4593 2.5585 41 1 2.7091 3.4988 5.7075 42 1 1.8163 2.4687 6.8758 43 1 3.9943 1.8062 7.4911 44 1 4.6733 2.2148 5.8882 45 1 4.2033 -0.3710 6.2884 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000440962531.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:49 Heat of formation + Delta-G solvation = -27.981786 kcal Electronic energy + Delta-G solvation = -26129.819443 eV Core-core repulsion = 22569.975322 eV Total energy + Delta-G solvation = -3559.844121 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.60313 -38.99299 -37.03414 -35.80677 -34.98714 -32.75404 -31.58462 -30.11599 -29.89809 -28.15864 -26.81232 -25.58131 -23.02944 -22.83350 -22.11865 -21.51909 -19.80287 -18.14286 -17.66221 -17.48093 -16.57462 -16.21730 -15.91652 -15.38632 -14.83822 -14.42273 -14.18863 -14.08040 -13.84062 -13.60109 -13.32438 -13.21599 -13.12318 -12.76252 -12.48387 -12.28317 -11.94087 -11.77957 -11.70677 -11.49347 -11.37447 -11.17157 -11.00213 -10.84615 -10.72437 -10.57766 -10.46530 -10.32016 -10.06717 -9.55911 -9.11595 -8.81818 -8.39914 -8.10422 -7.55883 -6.00381 -4.04545 2.35281 3.10111 3.31385 3.38426 3.42016 3.53796 3.63393 4.08628 4.22590 4.32609 4.48817 4.65114 4.75070 5.02610 5.18902 5.24138 5.27326 5.34388 5.37705 5.44995 5.56983 5.57279 5.63159 5.63882 5.73967 5.76575 5.91677 5.93810 6.16264 6.28205 6.32353 6.44567 6.49836 6.57718 6.72150 6.88589 7.05031 7.18768 7.51768 7.64268 7.97144 8.00210 8.29227 8.52779 8.96161 9.21737 9.60514 11.07619 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.019286 B = 0.004557 C = 0.004166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.472508 B = 6143.182199 C = 6719.315458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.105 3.895 3 N -0.598 5.598 4 C 0.248 3.752 5 C -0.522 4.522 6 H 0.056 0.944 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.896 3.104 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.510 3.490 14 O -0.527 6.527 15 C 0.024 3.976 16 N -0.484 5.484 17 C 0.029 3.971 18 C -0.229 4.229 19 C 0.049 3.951 20 H 0.117 0.883 21 C -0.129 4.129 22 C 0.091 3.909 23 N -0.733 5.733 24 C 0.499 3.501 25 O -0.527 6.527 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.050 0.950 29 H 0.081 0.919 30 H 0.064 0.936 31 H 0.031 0.969 32 H 0.043 0.957 33 H 0.262 0.738 34 H 0.097 0.903 35 H 0.076 0.924 36 H 0.103 0.897 37 H 0.081 0.919 38 H 0.060 0.940 39 H 0.079 0.921 40 H 0.061 0.939 41 H 0.106 0.894 42 H 0.089 0.911 43 H 0.080 0.920 44 H 0.081 0.919 45 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.990 -4.731 20.790 21.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.020 4.020 3 N -0.331 5.331 4 C 0.128 3.872 5 C -0.561 4.561 6 H 0.074 0.926 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.724 3.276 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.295 3.705 14 O -0.403 6.403 15 C -0.107 4.107 16 N -0.208 5.208 17 C -0.098 4.098 18 C -0.288 4.288 19 C -0.064 4.064 20 H 0.135 0.865 21 C -0.167 4.167 22 C -0.033 4.033 23 N -0.391 5.391 24 C 0.284 3.716 25 O -0.402 6.402 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.069 0.931 29 H 0.099 0.901 30 H 0.082 0.918 31 H 0.049 0.951 32 H 0.061 0.939 33 H 0.072 0.928 34 H 0.115 0.885 35 H 0.094 0.906 36 H 0.121 0.879 37 H 0.099 0.901 38 H 0.079 0.921 39 H 0.097 0.903 40 H 0.080 0.920 41 H 0.124 0.876 42 H 0.108 0.892 43 H 0.098 0.902 44 H 0.099 0.901 45 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -2.288 -3.992 20.214 20.731 hybrid contribution 1.675 -1.400 -0.224 2.194 sum -0.613 -5.392 19.991 20.714 Atomic orbital electron populations 1.22202 0.96754 1.01395 1.02240 1.21426 0.93619 0.84292 1.02617 1.48234 1.64074 1.13171 1.07620 1.19243 0.96125 0.93649 0.78150 1.21472 0.96966 1.31546 1.06142 0.92588 1.24924 0.97723 0.95014 0.96427 1.69948 1.35500 1.33598 1.14354 0.86475 0.84838 0.77990 0.78296 1.19916 1.21004 1.20895 1.20021 0.78821 0.86987 0.84624 1.90627 1.45088 1.17694 1.86885 1.22299 1.02314 0.95688 0.90362 1.62339 1.14102 1.45203 0.99147 1.22647 0.85336 0.97298 1.04491 1.23169 1.01852 0.99906 1.03917 1.22712 1.01792 0.90230 0.91646 0.86546 1.22719 0.96147 1.00703 0.97110 1.22357 0.99092 0.81364 1.00472 1.46437 1.35001 1.10626 1.47034 1.21944 0.80063 0.91992 0.77618 1.90768 1.65545 1.33230 1.50652 0.92068 0.92214 0.93060 0.90058 0.91809 0.95106 0.93868 0.92843 0.88495 0.90631 0.87853 0.90060 0.92059 0.90280 0.92018 0.87590 0.89239 0.90210 0.90130 0.75368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.47 10.24 37.16 0.38 -2.09 16 2 C 0.10 1.84 5.96 -4.04 -0.02 1.81 16 3 N -0.60 -13.13 2.46 -175.06 -0.43 -13.56 16 4 C 0.25 6.60 5.16 -5.20 -0.03 6.57 16 5 C -0.52 -15.04 9.39 -34.44 -0.32 -15.36 16 6 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.90 13.29 55.43 0.74 -26.16 16 9 Si 0.90 22.17 29.54 -169.99 -5.02 17.15 16 10 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 13 C 0.51 10.95 7.36 -10.98 -0.08 10.86 16 14 O -0.53 -13.25 14.16 5.56 0.08 -13.17 16 15 C 0.02 0.40 3.14 -4.97 -0.02 0.38 16 16 N -0.48 -7.10 4.50 -228.10 -1.03 -8.13 16 17 C 0.03 0.42 5.05 -3.82 -0.02 0.40 16 18 C -0.23 -3.31 8.36 37.16 0.31 -3.00 16 19 C 0.05 0.54 3.24 -67.73 -0.22 0.32 16 20 H 0.12 1.22 8.14 -51.93 -0.42 0.80 16 21 C -0.13 -0.94 6.20 -25.10 -0.16 -1.10 16 22 C 0.09 0.58 6.73 -3.12 -0.02 0.56 16 23 N -0.73 -6.37 4.35 -59.20 -0.26 -6.62 16 24 C 0.50 6.09 4.64 -10.87 -0.05 6.04 16 25 O -0.53 -8.41 16.91 5.55 0.09 -8.32 16 26 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 27 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 28 H 0.05 0.72 7.40 -51.93 -0.38 0.34 16 29 H 0.08 1.46 8.07 -51.93 -0.42 1.04 16 30 H 0.06 1.02 6.29 -51.93 -0.33 0.69 16 31 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 32 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 33 H 0.26 7.41 8.31 -40.82 -0.34 7.08 16 34 H 0.10 1.48 7.33 -51.93 -0.38 1.10 16 35 H 0.08 1.30 3.53 -51.93 -0.18 1.12 16 36 H 0.10 1.92 6.31 -51.93 -0.33 1.59 16 37 H 0.08 0.91 4.01 -51.93 -0.21 0.70 16 38 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.08 1.00 3.27 -51.93 -0.17 0.83 16 40 H 0.06 1.06 5.76 -51.93 -0.30 0.76 16 41 H 0.11 0.79 7.53 -51.93 -0.39 0.40 16 42 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 44 H 0.08 0.53 5.84 -51.93 -0.30 0.23 16 45 H 0.41 2.99 8.96 -40.82 -0.37 2.62 16 LS Contribution 342.21 15.07 5.16 5.16 Total: -1.00 -35.20 342.21 -7.66 -42.85 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -6.65 Total: 3.71 kcal Atomic # 6 Polarization: 7.43 SS G_CDS: -0.34 Total: 7.09 kcal Atomic # 7 Polarization: -53.49 SS G_CDS: -0.98 Total: -54.47 kcal Atomic # 8 Polarization: -21.66 SS G_CDS: 0.17 Total: -21.49 kcal Atomic # 14 Polarization: 22.17 SS G_CDS: -5.02 Total: 17.15 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -35.20 -7.66 -42.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000440962531.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.870 kcal (2) G-P(sol) polarization free energy of solvation -35.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.852 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds