Wall clock time and date at job start Tue Mar 31 2020 03:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 109.47016 * 2 1 4 4 C 1.46501 * 120.00198 * 270.00204 * 3 2 1 5 5 C 1.50695 * 109.46931 * 269.99890 * 4 3 2 6 6 H 1.07995 * 120.00029 * 0.02562 * 5 4 3 7 7 C 1.37884 * 119.99854 * 180.02562 * 5 4 3 8 8 N 1.31515 * 119.99641 * 359.97438 * 7 5 4 9 9 Si 1.86796 * 120.00042 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47077 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.47100 * 119.99733 * 9 7 5 12 12 H 1.48498 * 109.47232 * 239.99878 * 9 7 5 13 13 C 1.34775 * 120.00004 * 90.00032 * 3 2 1 14 14 O 1.21276 * 120.00524 * 180.02562 * 13 3 2 15 15 C 1.50704 * 119.99873 * 0.27380 * 13 3 2 16 16 N 1.46899 * 109.47121 * 174.55279 * 15 13 3 17 17 C 1.46897 * 110.99918 * 293.91952 * 16 15 13 18 18 C 1.53003 * 109.47704 * 310.28479 * 17 16 15 19 19 C 1.46904 * 110.99950 * 169.97090 * 16 15 13 20 20 H 1.09000 * 110.43116 * 300.44089 * 19 16 15 21 21 C 1.54626 * 110.48608 * 177.75801 * 19 16 15 22 22 C 1.54480 * 101.76090 * 266.11657 * 21 19 16 23 23 N 1.46759 * 105.47412 * 334.58377 * 22 21 19 24 24 C 1.34417 * 111.30073 * 17.01831 * 23 22 21 25 25 O 1.21286 * 124.93621 * 179.55859 * 24 23 22 26 26 H 1.08999 * 109.47095 * 60.00061 * 1 2 3 27 27 H 1.09007 * 109.46746 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47157 * 299.99911 * 1 2 3 29 29 H 1.09004 * 109.46981 * 240.00432 * 2 1 3 30 30 H 1.08990 * 109.47218 * 120.00147 * 2 1 3 31 31 H 1.09000 * 109.47063 * 29.99923 * 4 3 2 32 32 H 1.08996 * 109.46997 * 149.99757 * 4 3 2 33 33 H 0.97007 * 119.99690 * 179.97438 * 8 7 5 34 34 H 1.09000 * 109.47403 * 294.55774 * 15 13 3 35 35 H 1.09001 * 109.46676 * 54.55524 * 15 13 3 36 36 H 1.09002 * 109.47153 * 70.28073 * 17 16 15 37 37 H 1.08998 * 109.47496 * 190.28267 * 17 16 15 38 38 H 1.08996 * 109.47513 * 173.25314 * 18 17 16 39 39 H 1.09003 * 109.46597 * 293.25858 * 18 17 16 40 40 H 1.09002 * 109.46713 * 53.24726 * 18 17 16 41 41 H 1.09000 * 110.96996 * 24.23346 * 21 19 16 42 42 H 1.08993 * 110.96879 * 147.99939 * 21 19 16 43 43 H 1.09006 * 110.24591 * 215.58404 * 22 21 19 44 44 H 1.09005 * 110.32356 * 93.62766 * 22 21 19 45 45 H 0.97006 * 124.34848 * 197.03842 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8352 -1.7037 6 1 4.3425 1.2304 -1.0962 7 6 4.1493 2.3907 -2.8774 8 7 3.3492 3.1268 -3.6175 9 14 5.9137 2.0979 -3.4163 10 1 6.6010 1.2416 -2.4165 11 1 5.9217 1.4193 -4.7373 12 1 6.6209 3.3992 -3.5240 13 6 2.2429 2.0166 1.1672 14 8 2.6467 3.1601 1.1673 15 6 1.9977 1.3041 2.4723 16 7 2.4370 2.1560 3.5854 17 6 3.8934 2.3459 3.5600 18 6 4.5826 0.9870 3.4202 19 6 2.0005 1.6040 4.8749 20 1 0.9138 1.5249 4.9067 21 6 2.5166 2.4790 6.0407 22 6 3.8328 1.7617 6.4140 23 7 3.6557 0.3697 5.9842 24 6 2.6369 0.2529 5.1151 25 8 2.2803 -0.7848 4.5983 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5138 0.8899 31 1 1.5816 1.6878 -2.0284 32 1 2.0954 3.1411 -1.1383 33 1 3.6755 3.5180 -4.4430 34 1 0.9337 1.0911 2.5757 35 1 2.5584 0.3694 2.4869 36 1 4.1627 2.9785 2.7142 37 1 4.2140 2.8222 4.4865 38 1 5.6534 1.1353 3.2811 39 1 4.4113 0.3984 4.3215 40 1 4.1738 0.4593 2.5585 41 1 2.7091 3.4988 5.7075 42 1 1.8163 2.4687 6.8758 43 1 3.9943 1.8062 7.4911 44 1 4.6733 2.2148 5.8882 45 1 4.2033 -0.3710 6.2884 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000440962531.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:49 Heat of formation + Delta-G solvation = -55.478383 kcal Electronic energy + Delta-G solvation = -26131.011785 eV Core-core repulsion = 22569.975322 eV Total energy + Delta-G solvation = -3561.036463 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.54861 -40.61643 -38.11787 -37.06256 -36.49047 -34.91392 -32.50193 -31.72699 -31.11355 -29.53675 -28.19750 -26.94472 -24.87965 -24.19885 -23.20966 -22.45907 -20.80608 -19.76080 -18.64425 -18.60304 -18.42270 -17.80418 -17.15539 -17.11552 -16.27307 -16.08203 -15.31740 -15.14560 -14.93086 -14.79734 -14.66239 -14.56458 -14.36492 -14.13935 -13.78556 -13.59947 -13.43933 -13.28452 -13.11591 -12.87487 -12.71012 -12.62709 -12.49792 -12.18675 -12.15424 -12.02217 -11.97181 -11.76987 -11.65923 -11.35199 -10.65768 -10.54693 -9.86122 -9.43326 -9.29375 -8.23235 -6.37977 1.33831 1.35755 1.40680 1.47798 1.83823 2.20932 2.38365 2.39240 2.88371 3.05758 3.40516 3.52811 3.66659 3.97881 4.01945 4.04761 4.07224 4.24802 4.31301 4.31919 4.41204 4.43059 4.58525 4.60115 4.68747 4.83279 4.90504 4.94592 5.00666 5.04356 5.09634 5.13800 5.20780 5.29988 5.33892 5.57101 5.66225 5.80583 5.87514 5.96687 5.99854 6.06401 6.69182 6.79789 7.17062 7.27701 7.51079 8.83972 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.019286 B = 0.004557 C = 0.004166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.472508 B = 6143.182199 C = 6719.315458 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.101 3.899 3 N -0.605 5.605 4 C 0.265 3.735 5 C -0.540 4.540 6 H 0.047 0.953 7 C 0.010 3.990 8 N -0.927 5.927 9 Si 0.967 3.033 10 H -0.271 1.271 11 H -0.268 1.268 12 H -0.278 1.278 13 C 0.502 3.498 14 O -0.572 6.572 15 C 0.043 3.957 16 N -0.496 5.496 17 C 0.034 3.966 18 C -0.223 4.223 19 C 0.042 3.958 20 H 0.124 0.876 21 C -0.121 4.121 22 C 0.088 3.912 23 N -0.720 5.720 24 C 0.492 3.508 25 O -0.571 6.571 26 H 0.045 0.955 27 H 0.093 0.907 28 H 0.058 0.942 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.021 0.979 32 H -0.001 1.001 33 H 0.267 0.733 34 H 0.114 0.886 35 H 0.075 0.925 36 H 0.056 0.944 37 H 0.120 0.880 38 H 0.064 0.936 39 H 0.100 0.900 40 H 0.028 0.972 41 H 0.107 0.893 42 H 0.119 0.881 43 H 0.118 0.882 44 H 0.082 0.918 45 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.314 -5.639 23.434 24.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.022 4.022 3 N -0.337 5.337 4 C 0.144 3.856 5 C -0.579 4.579 6 H 0.065 0.935 7 C -0.189 4.189 8 N -0.567 5.567 9 Si 0.791 3.209 10 H -0.195 1.195 11 H -0.193 1.193 12 H -0.204 1.204 13 C 0.290 3.710 14 O -0.451 6.451 15 C -0.088 4.088 16 N -0.219 5.219 17 C -0.093 4.093 18 C -0.282 4.282 19 C -0.069 4.069 20 H 0.142 0.858 21 C -0.159 4.159 22 C -0.035 4.035 23 N -0.377 5.377 24 C 0.278 3.722 25 O -0.449 6.449 26 H 0.064 0.936 27 H 0.112 0.888 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.101 0.899 31 H 0.039 0.961 32 H 0.017 0.983 33 H 0.076 0.924 34 H 0.132 0.868 35 H 0.092 0.908 36 H 0.075 0.925 37 H 0.137 0.863 38 H 0.083 0.917 39 H 0.118 0.882 40 H 0.047 0.953 41 H 0.125 0.875 42 H 0.137 0.863 43 H 0.136 0.864 44 H 0.100 0.900 45 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -1.609 -4.919 22.905 23.482 hybrid contribution 1.445 -1.088 -0.983 2.058 sum -0.164 -6.007 21.922 22.731 Atomic orbital electron populations 1.22125 0.94201 1.03463 1.01851 1.21671 0.95680 0.81745 1.03105 1.48264 1.64310 1.14764 1.06398 1.18690 0.95225 0.91558 0.80166 1.21677 0.97798 1.31872 1.06545 0.93457 1.25826 1.02327 0.94446 0.96324 1.70060 1.37616 1.34161 1.14816 0.85385 0.79105 0.78075 0.78327 1.19525 1.19343 1.20395 1.20912 0.77505 0.86656 0.85928 1.90595 1.46959 1.19865 1.87694 1.22080 1.03291 0.94934 0.88481 1.62263 1.14089 1.45432 1.00164 1.22572 0.85578 0.96723 1.04420 1.23153 1.01798 0.99785 1.03472 1.22904 1.02419 0.90735 0.90880 0.85827 1.22809 0.97045 0.99886 0.96132 1.22592 0.98512 0.79546 1.02849 1.46448 1.33614 1.12109 1.45510 1.22104 0.80720 0.91622 0.77785 1.90745 1.66984 1.34666 1.52530 0.93608 0.88847 0.92273 0.90895 0.89934 0.96094 0.98253 0.92359 0.86783 0.90780 0.92510 0.86275 0.91704 0.88194 0.95296 0.87496 0.86318 0.86371 0.90023 0.74367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.54 10.24 71.98 0.74 -3.80 16 2 C 0.10 3.57 5.96 86.38 0.51 4.08 16 3 N -0.61 -27.75 2.46 -826.17 -2.03 -29.78 16 4 C 0.26 14.96 5.16 85.63 0.44 15.40 16 5 C -0.54 -32.35 9.39 25.60 0.24 -32.11 16 6 H 0.05 2.85 7.81 -2.91 -0.02 2.82 16 7 C 0.01 0.58 5.46 84.66 0.46 1.04 16 8 N -0.93 -57.20 13.29 21.45 0.28 -56.92 16 9 Si 0.97 46.12 29.54 68.60 2.03 48.14 16 10 H -0.27 -12.64 7.11 99.48 0.71 -11.94 16 11 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 12 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 13 C 0.50 22.48 7.36 87.66 0.64 23.13 16 14 O -0.57 -30.46 14.16 -3.02 -0.04 -30.50 16 15 C 0.04 1.44 3.14 85.56 0.27 1.70 16 16 N -0.50 -14.24 4.50 -875.57 -3.94 -18.18 16 17 C 0.03 0.98 5.05 86.30 0.44 1.41 16 18 C -0.22 -6.35 8.36 71.98 0.60 -5.75 16 19 C 0.04 0.85 3.24 44.90 0.15 0.99 16 20 H 0.12 2.30 8.14 -2.39 -0.02 2.28 16 21 C -0.12 -1.30 6.20 31.65 0.20 -1.10 16 22 C 0.09 0.74 6.73 86.83 0.58 1.33 16 23 N -0.72 -10.20 4.35 -459.81 -2.00 -12.20 16 24 C 0.49 10.99 4.64 87.90 0.41 11.40 16 25 O -0.57 -17.54 16.91 -3.05 -0.05 -17.59 16 26 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.09 2.07 8.14 -2.38 -0.02 2.05 16 28 H 0.06 1.60 7.40 -2.39 -0.02 1.58 16 29 H 0.07 2.68 8.07 -2.39 -0.02 2.66 16 30 H 0.08 2.62 6.29 -2.39 -0.02 2.60 16 31 H 0.02 1.20 8.07 -2.39 -0.02 1.19 16 32 H 0.00 -0.04 7.42 -2.39 -0.02 -0.06 16 33 H 0.27 15.38 8.31 -92.70 -0.77 14.61 16 34 H 0.11 3.40 7.33 -2.39 -0.02 3.39 16 35 H 0.07 2.57 3.53 -2.39 -0.01 2.56 16 36 H 0.06 2.20 6.31 -2.39 -0.02 2.18 16 37 H 0.12 2.43 4.01 -2.39 -0.01 2.42 16 38 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.10 2.38 3.27 -2.39 -0.01 2.37 16 40 H 0.03 1.00 5.76 -2.39 -0.01 0.99 16 41 H 0.11 1.22 7.53 -2.39 -0.02 1.20 16 42 H 0.12 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.12 0.25 8.14 -2.38 -0.02 0.23 16 44 H 0.08 0.73 5.84 -2.38 -0.01 0.72 16 45 H 0.42 4.77 8.96 -92.70 -0.83 3.94 16 Total: -1.00 -81.51 342.21 0.12 -81.40 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: 0.19 Total: 17.90 kcal Atomic # 6 Polarization: 12.04 SS G_CDS: 5.68 Total: 17.73 kcal Atomic # 7 Polarization: -109.39 SS G_CDS: -7.68 Total: -117.07 kcal Atomic # 8 Polarization: -48.00 SS G_CDS: -0.09 Total: -48.09 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.14 kcal Total: -81.51 0.12 -81.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000440962531.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.921 kcal (2) G-P(sol) polarization free energy of solvation -81.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.399 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds