Wall clock time and date at job start Tue Mar 31 2020 03:39:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46497 * 109.46858 * 2 1 4 4 C 1.46500 * 120.00330 * 269.99877 * 3 2 1 5 5 C 1.50701 * 109.47231 * 270.00447 * 4 3 2 6 6 H 1.07997 * 120.00443 * 359.97438 * 5 4 3 7 7 C 1.37882 * 119.99737 * 179.97438 * 5 4 3 8 8 N 1.31510 * 120.00045 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99610 * 179.97438 * 7 5 4 10 10 H 1.48506 * 109.47361 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47523 * 119.99924 * 9 7 5 12 12 H 1.48497 * 109.47106 * 239.99788 * 9 7 5 13 13 C 1.34781 * 120.00475 * 90.00064 * 3 2 1 14 14 O 1.21282 * 120.00339 * 179.97438 * 13 3 2 15 15 C 1.50704 * 119.99325 * 359.97438 * 13 3 2 16 16 N 1.46899 * 109.46653 * 176.56933 * 15 13 3 17 17 C 1.46898 * 111.00171 * 288.53217 * 16 15 13 18 18 C 1.53001 * 109.47209 * 290.26191 * 17 16 15 19 19 C 1.46907 * 110.99689 * 164.57785 * 16 15 13 20 20 H 1.08997 * 110.53857 * 62.86031 * 19 16 15 21 21 C 1.54633 * 110.48268 * 185.46737 * 19 16 15 22 22 C 1.54480 * 101.76380 * 93.88029 * 21 19 16 23 23 N 1.46765 * 105.47195 * 25.41452 * 22 21 19 24 24 C 1.34417 * 111.30250 * 342.98032 * 23 22 21 25 25 O 1.21280 * 124.94058 * 180.67190 * 24 23 22 26 26 H 1.08999 * 109.47273 * 299.99534 * 1 2 3 27 27 H 1.08999 * 109.47513 * 60.00649 * 1 2 3 28 28 H 1.09009 * 109.47078 * 180.02562 * 1 2 3 29 29 H 1.08994 * 109.47323 * 239.99993 * 2 1 3 30 30 H 1.09000 * 109.47608 * 119.99896 * 2 1 3 31 31 H 1.09001 * 109.46729 * 29.99734 * 4 3 2 32 32 H 1.08998 * 109.47815 * 149.99936 * 4 3 2 33 33 H 0.97008 * 119.99726 * 180.02562 * 8 7 5 34 34 H 1.09000 * 109.47180 * 56.57282 * 15 13 3 35 35 H 1.08997 * 109.47215 * 296.57063 * 15 13 3 36 36 H 1.08998 * 109.47446 * 50.26233 * 17 16 15 37 37 H 1.09004 * 109.47390 * 170.26816 * 17 16 15 38 38 H 1.09000 * 109.47340 * 178.27132 * 18 17 16 39 39 H 1.09006 * 109.47290 * 298.27523 * 18 17 16 40 40 H 1.09000 * 109.46824 * 58.27214 * 18 17 16 41 41 H 1.09002 * 110.96466 * 211.99549 * 21 19 16 42 42 H 1.08996 * 110.97187 * 335.72568 * 21 19 16 43 43 H 1.09002 * 110.24271 * 144.40982 * 22 21 19 44 44 H 1.08992 * 110.24664 * 266.41392 * 22 21 19 45 45 H 0.97003 * 124.34436 * 162.98513 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3428 1.2309 -1.0959 7 6 4.1489 2.3898 -2.8780 8 7 3.3486 3.1251 -3.6185 9 14 5.9133 2.0969 -3.4169 10 1 6.6014 1.2426 -2.4158 11 1 5.9214 1.4173 -4.7373 12 1 6.6202 3.3983 -3.5257 13 6 2.2428 2.0167 1.1672 14 8 2.6475 3.1600 1.1672 15 6 1.9912 1.3064 2.4723 16 7 2.3869 2.1767 3.5876 17 6 3.8485 2.3012 3.6653 18 6 4.4505 0.9693 4.1175 19 6 1.8317 1.6901 4.8577 20 1 2.2283 0.7030 5.0952 21 6 2.1395 2.6861 5.9997 22 6 0.8622 3.5550 6.0127 23 7 -0.1954 2.7046 5.4540 24 6 0.3207 1.6527 4.7952 25 8 -0.3303 0.8005 4.2287 26 1 -0.3634 0.5137 0.8900 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3634 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.5816 1.6877 -2.0284 32 1 2.0954 3.1411 -1.1384 33 1 3.6745 3.5150 -4.4448 34 1 2.5755 0.3868 2.5041 35 1 0.9313 1.0665 2.5569 36 1 4.2435 2.5638 2.6839 37 1 4.1093 3.0798 4.3822 38 1 5.5370 1.0525 4.1456 39 1 4.0792 0.7218 5.1121 40 1 4.1642 0.1847 3.4171 41 1 2.2661 2.1646 6.9485 42 1 3.0184 3.2872 5.7668 43 1 0.6135 3.8446 7.0336 44 1 1.0018 4.4400 5.3921 45 1 -1.1450 2.8792 5.5481 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000440962532.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:39:51 Heat of formation + Delta-G solvation = -52.990374 kcal Electronic energy + Delta-G solvation = -25761.138588 eV Core-core repulsion = 22200.210013 eV Total energy + Delta-G solvation = -3560.928575 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.83791 -38.98432 -37.12552 -36.09404 -35.03212 -32.75480 -30.82833 -30.44761 -29.92742 -28.04415 -26.87285 -25.50437 -23.22038 -22.86370 -22.08475 -21.33456 -19.66764 -18.11382 -17.50558 -17.11377 -16.51297 -16.17107 -15.81433 -15.28629 -14.86863 -14.54356 -14.22899 -14.05998 -13.78499 -13.58996 -13.33070 -13.30350 -13.15545 -12.64973 -12.51080 -12.32898 -11.95675 -11.87832 -11.71133 -11.54373 -11.48886 -11.26714 -11.09566 -10.83381 -10.68857 -10.59132 -10.44239 -10.06729 -9.83955 -9.54929 -9.23548 -8.81550 -8.39286 -8.16330 -7.53693 -5.99503 -4.03867 2.37904 3.21971 3.31831 3.38945 3.42494 3.58362 3.71640 4.13270 4.25896 4.33934 4.49809 4.70364 4.96348 5.06300 5.13807 5.23579 5.29706 5.34313 5.36961 5.39323 5.48323 5.55771 5.57741 5.67140 5.74535 5.81864 5.89747 5.97877 6.09902 6.19928 6.33471 6.35878 6.61202 6.63628 6.83783 6.91023 7.06046 7.20865 7.53414 7.66068 7.98078 8.12234 8.30129 8.55361 8.97027 9.24428 9.61241 11.08498 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.019653 B = 0.004373 C = 0.003983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1424.380985 B = 6401.266552 C = 7028.830171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.108 3.892 3 N -0.599 5.599 4 C 0.248 3.752 5 C -0.522 4.522 6 H 0.056 0.944 7 C 0.060 3.940 8 N -0.895 5.895 9 Si 0.897 3.103 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.510 3.490 14 O -0.527 6.527 15 C 0.019 3.981 16 N -0.496 5.496 17 C 0.048 3.952 18 C -0.194 4.194 19 C 0.044 3.956 20 H 0.080 0.920 21 C -0.130 4.130 22 C 0.107 3.893 23 N -0.725 5.725 24 C 0.531 3.469 25 O -0.531 6.531 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.081 0.919 30 H 0.061 0.939 31 H 0.031 0.969 32 H 0.043 0.957 33 H 0.262 0.738 34 H 0.062 0.938 35 H 0.112 0.888 36 H 0.097 0.903 37 H 0.079 0.921 38 H 0.064 0.936 39 H 0.054 0.946 40 H 0.056 0.944 41 H 0.083 0.917 42 H 0.101 0.899 43 H 0.076 0.924 44 H 0.079 0.921 45 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.709 -3.729 20.778 21.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.017 4.017 3 N -0.332 5.332 4 C 0.128 3.872 5 C -0.561 4.561 6 H 0.075 0.925 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.725 3.275 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.296 3.704 14 O -0.403 6.403 15 C -0.112 4.112 16 N -0.221 5.221 17 C -0.080 4.080 18 C -0.253 4.253 19 C -0.068 4.068 20 H 0.097 0.903 21 C -0.168 4.168 22 C -0.017 4.017 23 N -0.380 5.380 24 C 0.316 3.684 25 O -0.407 6.407 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.077 0.923 29 H 0.099 0.901 30 H 0.080 0.920 31 H 0.049 0.951 32 H 0.061 0.939 33 H 0.071 0.929 34 H 0.080 0.920 35 H 0.130 0.870 36 H 0.116 0.884 37 H 0.097 0.903 38 H 0.083 0.917 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.102 0.898 42 H 0.119 0.881 43 H 0.095 0.905 44 H 0.097 0.903 45 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -3.916 -3.004 20.189 20.783 hybrid contribution 0.865 -0.921 -0.226 1.284 sum -3.050 -3.924 19.962 20.572 Atomic orbital electron populations 1.22208 0.96725 1.01416 1.02367 1.21394 0.93639 0.84280 1.02362 1.48236 1.64144 1.13217 1.07629 1.19237 0.96116 0.93636 0.78183 1.21477 0.96946 1.31588 1.06106 0.92530 1.24933 0.97741 0.95018 0.96443 1.69949 1.35521 1.33659 1.14288 0.86468 0.84804 0.77981 0.78288 1.19875 1.21025 1.20926 1.20047 0.78731 0.87030 0.84616 1.90641 1.45098 1.17640 1.86921 1.22363 1.03761 0.94572 0.90475 1.61847 1.11304 1.48807 1.00155 1.22332 0.85311 0.96200 1.04125 1.22469 1.01989 0.99690 1.01136 1.22401 0.92812 0.99257 0.92296 0.90271 1.22751 0.98935 0.97789 0.97342 1.22029 0.86642 0.94166 0.98859 1.46107 1.09589 1.26233 1.56116 1.20675 0.90303 0.80601 0.76802 1.90731 1.66987 1.39085 1.43868 0.92822 0.92173 0.92272 0.90079 0.92034 0.95139 0.93944 0.92850 0.92004 0.87029 0.88436 0.90274 0.91690 0.92678 0.92457 0.89806 0.88069 0.90523 0.90253 0.75206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.65 10.24 37.15 0.38 -2.27 16 2 C 0.11 1.90 5.95 -4.05 -0.02 1.87 16 3 N -0.60 -13.32 2.46 -175.06 -0.43 -13.75 16 4 C 0.25 6.66 5.16 -5.19 -0.03 6.63 16 5 C -0.52 -15.01 9.39 -34.44 -0.32 -15.33 16 6 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.98 13.29 55.43 0.74 -26.25 16 9 Si 0.90 22.06 29.54 -169.99 -5.02 17.03 16 10 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 13 C 0.51 11.12 7.24 -10.98 -0.08 11.04 16 14 O -0.53 -13.44 14.61 5.56 0.08 -13.36 16 15 C 0.02 0.32 3.87 -4.97 -0.02 0.30 16 16 N -0.50 -7.29 4.20 -228.09 -0.96 -8.25 16 17 C 0.05 0.65 5.43 -3.82 -0.02 0.63 16 18 C -0.19 -2.16 9.17 37.16 0.34 -1.82 16 19 C 0.04 0.51 2.03 -67.72 -0.14 0.37 16 20 H 0.08 0.86 6.39 -51.93 -0.33 0.53 16 21 C -0.13 -1.01 6.67 -25.10 -0.17 -1.18 16 22 C 0.11 0.81 7.78 -3.12 -0.02 0.78 16 23 N -0.73 -7.19 6.24 -59.21 -0.37 -7.56 16 24 C 0.53 7.06 7.33 -10.86 -0.08 6.98 16 25 O -0.53 -8.86 16.24 5.56 0.09 -8.77 16 26 H 0.05 0.87 7.32 -51.93 -0.38 0.49 16 27 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 29 H 0.08 1.45 8.07 -51.93 -0.42 1.03 16 30 H 0.06 0.95 6.35 -51.93 -0.33 0.62 16 31 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 32 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 33 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 34 H 0.06 0.96 5.29 -51.93 -0.27 0.69 16 35 H 0.11 1.96 4.65 -51.93 -0.24 1.71 16 36 H 0.10 1.71 6.42 -51.93 -0.33 1.38 16 37 H 0.08 0.90 6.29 -51.93 -0.33 0.57 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 39 H 0.05 0.51 6.46 -51.93 -0.34 0.17 16 40 H 0.06 0.70 6.42 -51.93 -0.33 0.37 16 41 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.10 0.76 5.98 -51.93 -0.31 0.45 16 43 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 44 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.41 3.39 8.96 -40.82 -0.37 3.02 16 LS Contribution 352.67 15.07 5.31 5.31 Total: -1.00 -35.37 352.67 -7.70 -43.07 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: -6.87 Total: 2.86 kcal Atomic # 6 Polarization: 9.92 SS G_CDS: -0.28 Total: 9.65 kcal Atomic # 7 Polarization: -54.78 SS G_CDS: -1.02 Total: -55.80 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: 0.17 Total: -22.13 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -35.37 -7.70 -43.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000440962532.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.920 kcal (2) G-P(sol) polarization free energy of solvation -35.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.990 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds